RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 PCDH1Q08174 1060 aa12.65□□□□□ -0.38
SDC3-201ENST00000336798 POC5Q8NA72 575 aa12.65□□□□□ -0.38
SDC3-201ENST00000336798 KBTBD7Q8WVZ9 684 aa12.65□□□□□ -0.38
SDC3-201ENST00000336798 NDRG1Q92597 394 aaKnown RBP12.65□□□□□ -0.38
SDC3-201ENST00000336798 OR52E6Q96RD3 313 aa12.65□□□□□ -0.38
SDC3-201ENST00000336798 ST3GAL5Q9UNP4 418 aa12.65□□□□□ -0.38
SDC3-201ENST00000336798 MTF2Q9Y483 593 aaPredicted RBP12.65□□□□□ -0.38
SDC3-201ENST00000336798 PCDHAC2Q9Y5I4 1007 aa12.65□□□□□ -0.38
SDC3-201ENST00000336798 OR4Q2P0C623 313 aa12.65□□□□□ -0.38
SDC3-201ENST00000336798 COX4I1P13073 169 aa12.65□□□□□ -0.38
SDC3-201ENST00000336798 S100A1P23297 94 aa12.65□□□□□ -0.38
SDC3-201ENST00000336798 EIF4BP23588 611 aaKnown RBP12.65□□□□□ -0.38
SDC3-201ENST00000336798 SQLEQ14534 574 aa12.65□□□□□ -0.38
SDC3-201ENST00000336798 ZFP1Q6P2D0 407 aa12.65□□□□□ -0.38
SDC3-201ENST00000336798 ZPBP2Q6X784 338 aa12.65□□□□□ -0.38
SDC3-201ENST00000336798 PPP1R3FQ6ZSY5 799 aaPredicted RBP12.65□□□□□ -0.38
SDC3-201ENST00000336798 LMLNQ96KR4 655 aa12.65□□□□□ -0.38
SDC3-201ENST00000336798 CCSER2Q9H7U1 834 aa12.65□□□□□ -0.38
SDC3-201ENST00000336798 SGK2Q9HBY8 427 aa12.65□□□□□ -0.38
SDC3-201ENST00000336798 MDM4O15151 490 aa12.65□□□□□ -0.38
SDC3-201ENST00000336798 MAGEC1O60732 1142 aa12.65□□□□□ -0.38
SDC3-201ENST00000336798 EPHA3P29320 983 aa12.65□□□□□ -0.38
SDC3-201ENST00000336798 FCHO2Q0JRZ9 810 aa12.65□□□□□ -0.38
SDC3-201ENST00000336798 SMU1Q2TAY7 513 aa12.65□□□□□ -0.38
SDC3-201ENST00000336798 PTCHD4Q6ZW05 846 aa12.65□□□□□ -0.38
SDC3-201ENST00000336798 ALYREFQ86V81 257 aaKnown RBP12.65□□□□□ -0.38
SDC3-201ENST00000336798 MYO3AQ8NEV4 1616 aa12.65□□□□□ -0.38
SDC3-201ENST00000336798 HDAC10Q969S8 669 aa12.65□□□□□ -0.38
SDC3-201ENST00000336798 CCDC28BQ9BUN5 200 aa12.65□□□□□ -0.38
SDC3-201ENST00000336798 DSN1Q9H410 356 aa12.65□□□□□ -0.38
SDC3-201ENST00000336798 ERGIC3Q9Y282 383 aa12.65□□□□□ -0.38
SDC3-201ENST00000336798 SLC27A6Q9Y2P4 619 aa12.65□□□□□ -0.38
SDC3-201ENST00000336798 CACNB4O00305 520 aaPredicted RBP12.65□□□□□ -0.39
SDC3-201ENST00000336798 RFXANKO14593 260 aa12.65□□□□□ -0.39
SDC3-201ENST00000336798 PGM3O95394 542 aa12.65□□□□□ -0.39
SDC3-201ENST00000336798 ALADP13716 330 aa12.65□□□□□ -0.39
SDC3-201ENST00000336798 CHKAP35790 457 aa12.65□□□□□ -0.39
SDC3-201ENST00000336798 FBXO48Q5FWF7 155 aa12.65□□□□□ -0.39
SDC3-201ENST00000336798 CDKAL1Q5VV42 579 aa12.65□□□□□ -0.39
SDC3-201ENST00000336798 MCEMP1Q8IX19 187 aa12.65□□□□□ -0.39
SDC3-201ENST00000336798 PRSS58Q8IYP2 241 aa12.65□□□□□ -0.39
SDC3-201ENST00000336798 CADM2Q8N3J6 435 aa12.65□□□□□ -0.39
SDC3-201ENST00000336798 ADCY4Q8NFM4 1077 aa12.65□□□□□ -0.39
SDC3-201ENST00000336798 SLC35C1Q96A29 364 aa12.65□□□□□ -0.39
SDC3-201ENST00000336798 ART5Q96L15 291 aa12.65□□□□□ -0.39
SDC3-201ENST00000336798 TELO2Q9Y4R8 837 aa12.65□□□□□ -0.39
SDC3-201ENST00000336798 ASTN2O75129 1339 aaPredicted RBP12.64□□□□□ -0.39
SDC3-201ENST00000336798 TTC23Q5W5X9 447 aa12.64□□□□□ -0.39
SDC3-201ENST00000336798 B3GNT6Q6ZMB0 384 aa12.64□□□□□ -0.39
SDC3-201ENST00000336798 UBE2R2Q712K3 238 aaPredicted RBP12.64□□□□□ -0.39
SDC3-201ENST00000336798 MAP4K3Q8IVH8 894 aa12.64□□□□□ -0.39
SDC3-201ENST00000336798 VAT1Q99536 393 aa12.64□□□□□ -0.39
SDC3-201ENST00000336798 SPATA5L1Q9BVQ7 753 aa12.64□□□□□ -0.39
SDC3-201ENST00000336798 PORCNQ9H237 461 aa12.64□□□□□ -0.39
SDC3-201ENST00000336798 CFAP97Q9P2B7 532 aa12.64□□□□□ -0.39
SDC3-201ENST00000336798 RAB10P61026 200 aa12.64□□□□□ -0.39
SDC3-201ENST00000336798 TMEM119Q4V9L6 283 aa12.64□□□□□ -0.39
SDC3-201ENST00000336798 FIGNQ5HY92 759 aa12.64□□□□□ -0.39
SDC3-201ENST00000336798 CXorf57Q6NSI4 855 aaKnown RBP12.64□□□□□ -0.39
SDC3-201ENST00000336798 TMPRSS11BQ86T26 416 aa12.64□□□□□ -0.39
SDC3-201ENST00000336798 C12orf56Q8IXR9 622 aa12.64□□□□□ -0.39
SDC3-201ENST00000336798 TSEN2Q8NCE0 465 aaKnown RBP12.64□□□□□ -0.39
SDC3-201ENST00000336798 OR10H5Q8NGA6 315 aa12.64□□□□□ -0.39
SDC3-201ENST00000336798 PIH1D2Q8WWB5 315 aa12.64□□□□□ -0.39
SDC3-201ENST00000336798 OR8D1Q8WZ84 308 aa12.64□□□□□ -0.39
SDC3-201ENST00000336798 DEFB118Q96PH6 123 aa12.64□□□□□ -0.39
SDC3-201ENST00000336798 NRCAMQ92823 1304 aa12.64□□□□□ -0.39
SDC3-201ENST00000336798 A0A087WXM4 84 aa12.64□□□□□ -0.39
SDC3-201ENST00000336798 A0A0U1RQJ8 604 aa12.64□□□□□ -0.39
SDC3-201ENST00000336798 MAGEB3O15480 346 aa12.64□□□□□ -0.39
SDC3-201ENST00000336798 SEC24AO95486 1093 aa12.64□□□□□ -0.39
SDC3-201ENST00000336798 ADH1AP07327 375 aa12.64□□□□□ -0.39
SDC3-201ENST00000336798 SLURP2P0DP57 97 aa12.64□□□□□ -0.39
SDC3-201ENST00000336798 CDH13P55290 713 aa12.64□□□□□ -0.39
SDC3-201ENST00000336798 FAM91A1Q658Y4 838 aa12.64□□□□□ -0.39
SDC3-201ENST00000336798 TRIM40Q6P9F5 258 aa12.64□□□□□ -0.39
SDC3-201ENST00000336798 SAMD3Q8N6K7 520 aa12.64□□□□□ -0.39
SDC3-201ENST00000336798 ATXN2LQ8WWM7 1075 aaKnown RBP12.64□□□□□ -0.39
SDC3-201ENST00000336798 PPCDCQ96CD2 204 aa12.64□□□□□ -0.39
SDC3-201ENST00000336798 MRPL45Q9BRJ2 306 aaKnown RBP12.64□□□□□ -0.39
SDC3-201ENST00000336798 CHID1Q9BWS9 393 aa12.64□□□□□ -0.39
SDC3-201ENST00000336798 IKZF2Q9UKS7 526 aa12.64□□□□□ -0.39
SDC3-201ENST00000336798 FRMPD4Q14CM0 1322 aa12.64□□□□□ -0.39
SDC3-201ENST00000336798 IRF6O14896 467 aa12.64□□□□□ -0.39
SDC3-201ENST00000336798 S100GP29377 79 aa12.64□□□□□ -0.39
SDC3-201ENST00000336798 PSME3P61289 254 aa12.64□□□□□ -0.39
SDC3-201ENST00000336798 CYP4F8P98187 520 aa12.64□□□□□ -0.39
SDC3-201ENST00000336798 C9orf64Q5T6V5 341 aa12.64□□□□□ -0.39
SDC3-201ENST00000336798 C10orf107Q8IVU9 208 aa12.64□□□□□ -0.39
SDC3-201ENST00000336798 KATNAL2Q8IYT4 538 aa12.64□□□□□ -0.39
SDC3-201ENST00000336798 GPC2Q8N158 579 aa12.64□□□□□ -0.39
SDC3-201ENST00000336798 ING5Q8WYH8 240 aa12.64□□□□□ -0.39
SDC3-201ENST00000336798 TSPAN18Q96SJ8 248 aa12.64□□□□□ -0.39
SDC3-201ENST00000336798 DUSP9Q99956 384 aaKnown RBP12.64□□□□□ -0.39
SDC3-201ENST00000336798 CORO1CQ9ULV4 474 aaPredicted RBP12.64□□□□□ -0.39
SDC3-201ENST00000336798 A0A1W2PRG6 482 aa12.64□□□□□ -0.39
SDC3-201ENST00000336798 SIGLEC16A6NMB1 481 aa12.64□□□□□ -0.39
SDC3-201ENST00000336798 MLYCDO95822 493 aa12.64□□□□□ -0.39
SDC3-201ENST00000336798 PTGS2P35354 604 aa12.64□□□□□ -0.39
SDC3-201ENST00000336798 MBTD1Q05BQ5 628 aa12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms