RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 ATCAYQ86WG3 371 aa14.31□□□□□ -0.12
COL7A1-201ENST00000328333 HEXDCQ8WVB3 486 aa14.31□□□□□ -0.12
COL7A1-201ENST00000328333 RHBDF1Q96CC6 855 aa14.31□□□□□ -0.12
COL7A1-201ENST00000328333 AP1S3Q96PC3 154 aa14.31□□□□□ -0.12
COL7A1-201ENST00000328333 APBA2Q99767 749 aa14.31□□□□□ -0.12
COL7A1-201ENST00000328333 STK25O00506 426 aa14.31□□□□□ -0.12
COL7A1-201ENST00000328333 RPLP0P05388 317 aaKnown RBP14.31□□□□□ -0.12
COL7A1-201ENST00000328333 MGAT1P26572 445 aa14.31□□□□□ -0.12
COL7A1-201ENST00000328333 CCNYL2Q5T2Q4 361 aa14.31□□□□□ -0.12
COL7A1-201ENST00000328333 PACRGLQ8N7B6 248 aa14.31□□□□□ -0.12
COL7A1-201ENST00000328333 RNF148Q8N7C7 305 aa14.31□□□□□ -0.12
COL7A1-201ENST00000328333 MSH4O15457 936 aa14.31□□□□□ -0.12
COL7A1-201ENST00000328333 SCGNO76038 276 aa14.31□□□□□ -0.12
COL7A1-201ENST00000328333 MTHFRP42898 656 aa14.31□□□□□ -0.12
COL7A1-201ENST00000328333 GRB14Q14449 540 aa14.31□□□□□ -0.12
COL7A1-201ENST00000328333 DNAJB8Q8NHS0 232 aa14.31□□□□□ -0.12
COL7A1-201ENST00000328333 MBOAT7Q96N66 472 aa14.31□□□□□ -0.12
COL7A1-201ENST00000328333 NODALQ96S42 347 aa14.31□□□□□ -0.12
COL7A1-201ENST00000328333 PRR12Q9ULL5 1215 aa14.31□□□□□ -0.12
COL7A1-201ENST00000328333 ZNF432O94892 652 aa14.31□□□□□ -0.12
COL7A1-201ENST00000328333 FOSL2P15408 326 aa14.31□□□□□ -0.12
COL7A1-201ENST00000328333 GLRA2P23416 452 aa14.31□□□□□ -0.12
COL7A1-201ENST00000328333 FAAP100Q0VG06 881 aa14.31□□□□□ -0.12
COL7A1-201ENST00000328333 KANTRA0A1W2PQU2 76 aa14.31□□□□□ -0.12
COL7A1-201ENST00000328333 ZSCAN5CA6NGD5 496 aaPredicted RBP14.31□□□□□ -0.12
COL7A1-201ENST00000328333 CHURC1-FNTBB4DL54 471 aa14.31□□□□□ -0.12
COL7A1-201ENST00000328333 COL6A2P12110 1019 aa14.31□□□□□ -0.12
COL7A1-201ENST00000328333 OR1E1P30953 314 aa14.31□□□□□ -0.12
COL7A1-201ENST00000328333 ZNF234Q14588 700 aa14.31□□□□□ -0.12
COL7A1-201ENST00000328333 PGBD3Q8N328 593 aa14.31□□□□□ -0.12
COL7A1-201ENST00000328333 GPATCH1Q9BRR8 931 aaKnown RBP14.31□□□□□ -0.12
COL7A1-201ENST00000328333 PRAMEF33A0A0G2JMD5 474 aa14.31□□□□□ -0.12
COL7A1-201ENST00000328333 PRAMEF10O60809 474 aa14.31□□□□□ -0.12
COL7A1-201ENST00000328333 DENND2DQ9H6A0 471 aaPredicted RBP14.31□□□□□ -0.12
COL7A1-201ENST00000328333 ZNF318Q5VUA4 2279 aa14.31□□□□□ -0.12
COL7A1-201ENST00000328333 OCLNQ16625 522 aa14.3□□□□□ -0.12
COL7A1-201ENST00000328333 TMEM17Q86X19 198 aa14.3□□□□□ -0.12
COL7A1-201ENST00000328333 OR52E6Q96RD3 313 aa14.3□□□□□ -0.12
COL7A1-201ENST00000328333 CPVLQ9H3G5 476 aa14.3□□□□□ -0.12
COL7A1-201ENST00000328333 DDX43Q9NXZ2 648 aaKnown RBP14.3□□□□□ -0.12
COL7A1-201ENST00000328333 MCIDASD6RGH6 385 aa14.3□□□□□ -0.12
COL7A1-201ENST00000328333 SERPINA4P29622 427 aa14.3□□□□□ -0.12
COL7A1-201ENST00000328333 CRHR1P34998 444 aa14.3□□□□□ -0.12
COL7A1-201ENST00000328333 SLC9A3P48764 834 aa14.3□□□□□ -0.12
COL7A1-201ENST00000328333 TEAD4Q15561 434 aa14.3□□□□□ -0.12
COL7A1-201ENST00000328333 SUSD4Q5VX71 490 aa14.3□□□□□ -0.12
COL7A1-201ENST00000328333 GMCL1P1Q8NEA9 526 aa14.3□□□□□ -0.12
COL7A1-201ENST00000328333 ZNF304Q9HCX3 659 aa14.3□□□□□ -0.12
COL7A1-201ENST00000328333 ADIGQ0VDE8 80 aa14.3□□□□□ -0.12
COL7A1-201ENST00000328333 TMEM126BQ8IUX1 230 aa14.3□□□□□ -0.12
COL7A1-201ENST00000328333 DENND6BQ8NEG7 585 aa14.3□□□□□ -0.12
COL7A1-201ENST00000328333 PANX1Q96RD7 426 aa14.3□□□□□ -0.12
COL7A1-201ENST00000328333 FAM237BA0A1B0GVD1 139 aa14.3□□□□□ -0.12
COL7A1-201ENST00000328333 SIGLEC16A6NMB1 481 aa14.3□□□□□ -0.12
COL7A1-201ENST00000328333 GSC2O15499 205 aa14.3□□□□□ -0.12
COL7A1-201ENST00000328333 PSEN1P49768 467 aa14.3□□□□□ -0.12
COL7A1-201ENST00000328333 CCNHP51946 323 aaPredicted RBP14.3□□□□□ -0.12
COL7A1-201ENST00000328333 NRG3P56975 720 aa14.3□□□□□ -0.12
COL7A1-201ENST00000328333 BST1Q10588 318 aa14.3□□□□□ -0.12
COL7A1-201ENST00000328333 SPP2Q13103 211 aa14.3□□□□□ -0.12
COL7A1-201ENST00000328333 UBAP2LQ14157 1087 aaKnown RBP14.3□□□□□ -0.12
COL7A1-201ENST00000328333 KCNT2Q6UVM3 1135 aa14.3□□□□□ -0.12
COL7A1-201ENST00000328333 CCDC28AQ8IWP9 274 aa14.3□□□□□ -0.12
COL7A1-201ENST00000328333 ZNF615Q8N8J6 731 aa14.3□□□□□ -0.12
COL7A1-201ENST00000328333 OR2T12Q8NG77 320 aa14.3□□□□□ -0.12
COL7A1-201ENST00000328333 ASB7Q9H672 318 aa14.3□□□□□ -0.12
COL7A1-201ENST00000328333 TMEM9Q9P0T7 183 aa14.3□□□□□ -0.12
COL7A1-201ENST00000328333 ABT1Q9ULW3 272 aaKnown RBP14.3□□□□□ -0.12
COL7A1-201ENST00000328333 ACO1P21399 889 aaKnown RBP14.3□□□□□ -0.12
COL7A1-201ENST00000328333 ZNF280DQ6N043 979 aa14.3□□□□□ -0.12
COL7A1-201ENST00000328333 MPP5Q8N3R9 675 aa14.3□□□□□ -0.12
COL7A1-201ENST00000328333 DNAJC18Q9H819 358 aa14.3□□□□□ -0.12
COL7A1-201ENST00000328333 CHMP1AQ9HD42 196 aaPredicted RBP14.3□□□□□ -0.12
COL7A1-201ENST00000328333 THP07101 528 aa14.3□□□□□ -0.12
COL7A1-201ENST00000328333 PPP1R15BQ5SWA1 713 aa14.3□□□□□ -0.12
COL7A1-201ENST00000328333 C6orf52Q5T4I8 152 aa14.3□□□□□ -0.12
COL7A1-201ENST00000328333 ISCA1Q9BUE6 129 aa14.3□□□□□ -0.12
COL7A1-201ENST00000328333 HTATIP2Q9BUP3 242 aa14.3□□□□□ -0.12
COL7A1-201ENST00000328333 INTS10Q9NVR2 710 aaKnown RBP14.3□□□□□ -0.12
COL7A1-201ENST00000328333 LRRC10BA6NIK2 292 aa14.3□□□□□ -0.12
COL7A1-201ENST00000328333 PDE2AO00408 941 aaPredicted RBP14.3□□□□□ -0.12
COL7A1-201ENST00000328333 CDH5P33151 784 aaPredicted RBP14.3□□□□□ -0.12
COL7A1-201ENST00000328333 RPL4P36578 427 aaKnown RBP14.3□□□□□ -0.12
COL7A1-201ENST00000328333 NPTX2P47972 431 aa14.3□□□□□ -0.12
COL7A1-201ENST00000328333 KLHL22Q53GT1 634 aa14.3□□□□□ -0.12
COL7A1-201ENST00000328333 SETMARQ53H47 684 aaPredicted RBP14.3□□□□□ -0.12
COL7A1-201ENST00000328333 PIGBQ92521 554 aa14.3□□□□□ -0.12
COL7A1-201ENST00000328333 TARBP1Q13395 1621 aaKnown RBP14.3□□□□□ -0.12
COL7A1-201ENST00000328333 ANKDD1BA6NHY2 528 aa14.3□□□□□ -0.12
COL7A1-201ENST00000328333 NRP2O60462 931 aa14.3□□□□□ -0.12
COL7A1-201ENST00000328333 ZBTB11O95625 1053 aaPredicted RBP14.3□□□□□ -0.12
COL7A1-201ENST00000328333 CYP1A2P05177 515 aa14.3□□□□□ -0.12
COL7A1-201ENST00000328333 SLC6A4P31645 630 aa14.3□□□□□ -0.12
COL7A1-201ENST00000328333 SLC25A3Q00325 362 aa14.3□□□□□ -0.12
COL7A1-201ENST00000328333 ITGA7Q13683 1181 aa14.3□□□□□ -0.12
COL7A1-201ENST00000328333 VWA5B1Q5TIE3 1220 aa14.3□□□□□ -0.12
COL7A1-201ENST00000328333 SHQ1Q6PI26 577 aaKnown RBP14.3□□□□□ -0.12
COL7A1-201ENST00000328333 HIST2H2ABQ8IUE6 130 aaPredicted RBP14.3□□□□□ -0.12
COL7A1-201ENST00000328333 THRSPQ92748 146 aa14.3□□□□□ -0.12
COL7A1-201ENST00000328333 NXNL1Q96CM4 212 aa14.3□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 93.5 ms