RNA–Protein interactions for RNA: ENST00000325110.10

HMGCS1-201, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGCS1, Length 3,506 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-201ENST00000325110 GLP2RO95838 553 aa12.92□□□□□ -0.34
HMGCS1-201ENST00000325110 PRSS56P0CW18 603 aa12.92□□□□□ -0.34
HMGCS1-201ENST00000325110 SMIM18P0DKX4 95 aa12.92□□□□□ -0.34
HMGCS1-201ENST00000325110 SLC2A3P11169 496 aa12.92□□□□□ -0.34
HMGCS1-201ENST00000325110 FMO4P31512 558 aa12.92□□□□□ -0.34
HMGCS1-201ENST00000325110 CLCN5P51795 746 aa12.92□□□□□ -0.34
HMGCS1-201ENST00000325110 NR1H2P55055 460 aa12.92□□□□□ -0.34
HMGCS1-201ENST00000325110 MRPS6P82932 125 aaKnown RBP12.92□□□□□ -0.34
HMGCS1-201ENST00000325110 NFYCQ13952 458 aa12.92□□□□□ -0.34
HMGCS1-201ENST00000325110 TAF1CQ15572 869 aaPredicted RBP12.92□□□□□ -0.34
HMGCS1-201ENST00000325110 CYP51A1Q16850 503 aa12.92□□□□□ -0.34
HMGCS1-201ENST00000325110 CFAP52Q8N1V2 620 aa12.92□□□□□ -0.34
HMGCS1-201ENST00000325110 OR13C4Q8NGS5 318 aa12.92□□□□□ -0.34
HMGCS1-201ENST00000325110 FAM110BQ8TC76 370 aa12.92□□□□□ -0.34
HMGCS1-201ENST00000325110 VPS33AQ96AX1 596 aa12.92□□□□□ -0.34
HMGCS1-201ENST00000325110 LRCH3Q96II8 777 aa12.92□□□□□ -0.34
HMGCS1-201ENST00000325110 ADAM2Q99965 735 aa12.92□□□□□ -0.34
HMGCS1-201ENST00000325110 KATNBL1Q9H079 304 aa12.92□□□□□ -0.34
HMGCS1-201ENST00000325110 NMUR1Q9HB89 426 aa12.92□□□□□ -0.34
HMGCS1-201ENST00000325110 GTF2IRD1Q9UHL9 959 aa12.92□□□□□ -0.34
HMGCS1-201ENST00000325110 CNOT6Q9ULM6 557 aaKnown RBP12.92□□□□□ -0.34
HMGCS1-201ENST00000325110 RNF112Q9ULX5 631 aa12.92□□□□□ -0.34
HMGCS1-201ENST00000325110 ARL5AQ9Y689 179 aa12.92□□□□□ -0.34
HMGCS1-201ENST00000325110 MTHFD1P11586 935 aaKnown RBP12.92□□□□□ -0.34
HMGCS1-201ENST00000325110 TBX4P57082 545 aa12.92□□□□□ -0.34
HMGCS1-201ENST00000325110 TECRLQ5HYJ1 363 aa12.92□□□□□ -0.34
HMGCS1-201ENST00000325110 KIAA0930Q6ICG6 404 aaPredicted RBP12.92□□□□□ -0.34
HMGCS1-201ENST00000325110 LRRC43Q8N309 656 aa12.92□□□□□ -0.34
HMGCS1-201ENST00000325110 RNF217Q8TC41 542 aa12.92□□□□□ -0.34
HMGCS1-201ENST00000325110 DDI1Q8WTU0 396 aa12.92□□□□□ -0.34
HMGCS1-201ENST00000325110 ISL2Q96A47 359 aa12.92□□□□□ -0.34
HMGCS1-201ENST00000325110 PRICKLE1Q96MT3 831 aaPredicted RBP12.92□□□□□ -0.34
HMGCS1-201ENST00000325110 KATNAL1Q9BW62 490 aa12.92□□□□□ -0.34
HMGCS1-201ENST00000325110 NDUFAF1Q9Y375 327 aa12.92□□□□□ -0.34
HMGCS1-201ENST00000325110 HS3ST4Q9Y661 456 aa12.92□□□□□ -0.34
HMGCS1-201ENST00000325110 C7orf72A4D263 438 aa12.92□□□□□ -0.34
HMGCS1-201ENST00000325110 PSMA4P25789 261 aaKnown RBP12.92□□□□□ -0.34
HMGCS1-201ENST00000325110 CDKN2DP55273 166 aa12.92□□□□□ -0.34
HMGCS1-201ENST00000325110 IKBKEQ14164 716 aa12.92□□□□□ -0.34
HMGCS1-201ENST00000325110 INPP5AQ14642 412 aa12.92□□□□□ -0.34
HMGCS1-201ENST00000325110 DENND5AQ6IQ26 1287 aa12.92□□□□□ -0.34
HMGCS1-201ENST00000325110 SLC22A9Q8IVM8 553 aa12.92□□□□□ -0.34
HMGCS1-201ENST00000325110 LZTR1Q8N653 840 aa12.92□□□□□ -0.34
HMGCS1-201ENST00000325110 C2CD4AQ8NCU7 369 aaPredicted RBP12.92□□□□□ -0.34
HMGCS1-201ENST00000325110 GTF3C2Q8WUA4 911 aaPredicted RBP12.92□□□□□ -0.34
HMGCS1-201ENST00000325110 BHMTQ93088 406 aa12.92□□□□□ -0.34
HMGCS1-201ENST00000325110 SEPT5Q99719 369 aaPredicted RBP12.92□□□□□ -0.34
HMGCS1-201ENST00000325110 AKTIPQ9H8T0 292 aa12.92□□□□□ -0.34
HMGCS1-201ENST00000325110 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP12.92□□□□□ -0.345e-10■■■■■ 41.7
HMGCS1-201ENST00000325110 SUN2Q9UH99 717 aa12.92□□□□□ -0.34
HMGCS1-201ENST00000325110 SLC12A8A0AV02 714 aa12.91□□□□□ -0.34
HMGCS1-201ENST00000325110 TNPO2O14787 897 aaKnown RBP12.91□□□□□ -0.34
HMGCS1-201ENST00000325110 ZNF23P17027 643 aa12.91□□□□□ -0.34
HMGCS1-201ENST00000325110 DNAJB2P25686 324 aa12.91□□□□□ -0.34
HMGCS1-201ENST00000325110 OR1E1P30953 314 aa12.91□□□□□ -0.34
HMGCS1-201ENST00000325110 ARCN1P48444 511 aaKnown RBP12.91□□□□□ -0.34
HMGCS1-201ENST00000325110 RPL34P49207 117 aaKnown RBP12.91□□□□□ -0.34
HMGCS1-201ENST00000325110 ALFQ53S48 1182 aa12.91□□□□□ -0.34
HMGCS1-201ENST00000325110 AGMOQ6ZNB7 445 aa12.91□□□□□ -0.34
HMGCS1-201ENST00000325110 TMEM151AQ8N4L1 468 aa12.91□□□□□ -0.34
HMGCS1-201ENST00000325110 C3orf30Q96M34 536 aa12.91□□□□□ -0.34
HMGCS1-201ENST00000325110 SOX17Q9H6I2 414 aaPredicted RBP12.91□□□□□ -0.34
HMGCS1-201ENST00000325110 PREBQ9HCU5 417 aa12.91□□□□□ -0.34
HMGCS1-201ENST00000325110 GALNT8Q9NY28 637 aa12.91□□□□□ -0.34
HMGCS1-201ENST00000325110 CROCCQ5TZA2 2017 aa12.91□□□□□ -0.34
HMGCS1-201ENST00000325110 TRIP12Q14669 1992 aaPredicted RBP12.91□□□□□ -0.34
HMGCS1-201ENST00000325110 SIP14410 1827 aa12.91□□□□□ -0.34
HMGCS1-201ENST00000325110 FGF10O15520 208 aaPredicted RBP12.91□□□□□ -0.34
HMGCS1-201ENST00000325110 ZNF189O75820 626 aaPredicted RBP12.91□□□□□ -0.34
HMGCS1-201ENST00000325110 TMCC1O94876 653 aa12.91□□□□□ -0.34
HMGCS1-201ENST00000325110 KCNC1P48547 511 aa12.91□□□□□ -0.34
HMGCS1-201ENST00000325110 SCNN1BP51168 640 aa12.91□□□□□ -0.34
HMGCS1-201ENST00000325110 GRB14Q14449 540 aa12.91□□□□□ -0.34
HMGCS1-201ENST00000325110 NEDD8Q15843 81 aa12.91□□□□□ -0.34
HMGCS1-201ENST00000325110 C11orf91Q3C1V1 193 aa12.91□□□□□ -0.34
HMGCS1-201ENST00000325110 ZIK1Q3SY52 487 aaPredicted RBP12.91□□□□□ -0.34
HMGCS1-201ENST00000325110 ATAD1Q8NBU5 361 aa12.91□□□□□ -0.34
HMGCS1-201ENST00000325110 IGSF5Q9NSI5 407 aa12.91□□□□□ -0.34
HMGCS1-201ENST00000325110 PTTG2Q9NZH5 202 aa12.91□□□□□ -0.34
HMGCS1-201ENST00000325110 FLRT1Q9NZU1 646 aa12.91□□□□□ -0.34
HMGCS1-201ENST00000325110 DHRS12A0PJE2 317 aa12.91□□□□□ -0.34
HMGCS1-201ENST00000325110 MBLAC1A4D2B0 266 aaPredicted RBP12.91□□□□□ -0.34
HMGCS1-201ENST00000325110 FBP2O00757 339 aa12.91□□□□□ -0.34
HMGCS1-201ENST00000325110 FOXD2O60548 495 aaPredicted RBP12.91□□□□□ -0.34
HMGCS1-201ENST00000325110 RAMP2O60895 175 aa12.91□□□□□ -0.34
HMGCS1-201ENST00000325110 NDUFS3O75489 264 aa12.91□□□□□ -0.34
HMGCS1-201ENST00000325110 PCNAP12004 261 aa12.91□□□□□ -0.34
HMGCS1-201ENST00000325110 RHDQ02161 417 aa12.91□□□□□ -0.34
HMGCS1-201ENST00000325110 POLD3Q15054 466 aaPredicted RBP12.91□□□□□ -0.34
HMGCS1-201ENST00000325110 C6orf10Q5SRN2 563 aa12.91□□□□□ -0.34
HMGCS1-201ENST00000325110 MRNIPQ6NTE8 343 aa12.91□□□□□ -0.34
HMGCS1-201ENST00000325110 AHI1Q8N157 1196 aa12.91□□□□□ -0.34
HMGCS1-201ENST00000325110 MIER2Q8N344 545 aa12.91□□□□□ -0.34
HMGCS1-201ENST00000325110 RTL3Q8N8U3 475 aaKnown RBP12.91□□□□□ -0.34
HMGCS1-201ENST00000325110 MAGEE2Q8TD90 523 aaPredicted RBP12.91□□□□□ -0.34
HMGCS1-201ENST00000325110 TWIST2Q8WVJ9 160 aa12.91□□□□□ -0.34
HMGCS1-201ENST00000325110 GPR78Q96P69 363 aa12.91□□□□□ -0.34
HMGCS1-201ENST00000325110 FAM193BQ96PV7 902 aaPredicted RBP12.91□□□□□ -0.34
HMGCS1-201ENST00000325110 DMTF1Q9Y222 760 aa12.91□□□□□ -0.34
HMGCS1-201ENST00000325110 SLC27A5Q9Y2P5 690 aa12.91□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms