RNA–Protein interactions for RNA: ENST00000309546.7

LIME1-201, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIME1, Length 1,178 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-201ENST00000309546 KCTD16Q68DU8 428 aa19.58■□□□□ 0.72
LIME1-201ENST00000309546 GKN2Q86XP6 184 aa19.58■□□□□ 0.72
LIME1-201ENST00000309546 ARL10Q8N8L6 244 aa19.58■□□□□ 0.72
LIME1-201ENST00000309546 KYQ8NBH2 561 aa19.58■□□□□ 0.72
LIME1-201ENST00000309546 FUBP1Q96AE4 644 aaKnown RBP19.58■□□□□ 0.72
LIME1-201ENST00000309546 NUS1Q96E22 293 aa19.58■□□□□ 0.72
LIME1-201ENST00000309546 CCDC3Q9BQI4 270 aa19.58■□□□□ 0.72
LIME1-201ENST00000309546 NT5MQ9NPB1 228 aa19.58■□□□□ 0.72
LIME1-201ENST00000309546 RCOR3Q9P2K3 495 aaPredicted RBP19.58■□□□□ 0.72
LIME1-201ENST00000309546 MOSPD1Q9UJG1 213 aa19.58■□□□□ 0.72
LIME1-201ENST00000309546 GPR34Q9UPC5 381 aa19.58■□□□□ 0.72
LIME1-201ENST00000309546 A0A1W2PQ67 120 aa19.57■□□□□ 0.72
LIME1-201ENST00000309546 TMEM202A6NGA9 273 aa19.57■□□□□ 0.72
LIME1-201ENST00000309546 HTRA2O43464 458 aaPredicted RBP19.57■□□□□ 0.72
LIME1-201ENST00000309546 MAP3K6O95382 1288 aa19.57■□□□□ 0.72
LIME1-201ENST00000309546 KELP23276 732 aa19.57■□□□□ 0.72
LIME1-201ENST00000309546 NFKBIAP25963 317 aa19.57■□□□□ 0.72
LIME1-201ENST00000309546 VIPR1P32241 457 aa19.57■□□□□ 0.72
LIME1-201ENST00000309546 CCDC173Q0VFZ6 552 aa19.57■□□□□ 0.72
LIME1-201ENST00000309546 DPYSL3Q14195 570 aa19.57■□□□□ 0.72
LIME1-201ENST00000309546 CNGA3Q16281 694 aa19.57■□□□□ 0.72
LIME1-201ENST00000309546 ATP13A4Q4VNC1 1196 aa19.57■□□□□ 0.72
LIME1-201ENST00000309546 C3orf38Q5JPI3 329 aa19.57■□□□□ 0.72
LIME1-201ENST00000309546 ZFYVE27Q5T4F4 411 aa19.57■□□□□ 0.72
LIME1-201ENST00000309546 RBM44Q6ZP01 1051 aaKnown RBP19.57■□□□□ 0.72
LIME1-201ENST00000309546 OR56A4Q8NGH8 313 aa19.57■□□□□ 0.72
LIME1-201ENST00000309546 TPCN2Q8NHX9 752 aa19.57■□□□□ 0.72
LIME1-201ENST00000309546 CTNNBL1Q8WYA6 563 aaPredicted RBP19.57■□□□□ 0.72
LIME1-201ENST00000309546 OR1E3Q8WZA6 343 aa19.57■□□□□ 0.72
LIME1-201ENST00000309546 PACSIN1Q9BY11 444 aa19.57■□□□□ 0.72
LIME1-201ENST00000309546 DEF6Q9H4E7 631 aa19.57■□□□□ 0.72
LIME1-201ENST00000309546 WDR26Q9H7D7 661 aa19.57■□□□□ 0.72
LIME1-201ENST00000309546 FGF22Q9HCT0 170 aa19.57■□□□□ 0.72
LIME1-201ENST00000309546 MRPL40Q9NQ50 206 aaKnown RBP19.57■□□□□ 0.72
LIME1-201ENST00000309546 NENFQ9UMX5 172 aa19.57■□□□□ 0.72
LIME1-201ENST00000309546 GOLGA6CA6NDK9 693 aa19.56■□□□□ 0.72
LIME1-201ENST00000309546 GOLGA6BA6NDN3 693 aa19.56■□□□□ 0.72
LIME1-201ENST00000309546 CASC3O15234 703 aaKnown RBP19.56■□□□□ 0.72
LIME1-201ENST00000309546 GOLGA6DP0CG33 693 aa19.56■□□□□ 0.72
LIME1-201ENST00000309546 CYP2A6P11509 494 aaPredicted RBP19.56■□□□□ 0.72
LIME1-201ENST00000309546 IL4RP24394 825 aa19.56■□□□□ 0.72
LIME1-201ENST00000309546 ITKQ08881 620 aa19.56■□□□□ 0.72
LIME1-201ENST00000309546 NCBP2-AS2Q69YL0 99 aa19.56■□□□□ 0.72
LIME1-201ENST00000309546 LVRNQ6Q4G3 990 aa19.56■□□□□ 0.72
LIME1-201ENST00000309546 PELI3Q8N2H9 469 aa19.56■□□□□ 0.72
LIME1-201ENST00000309546 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP19.56■□□□□ 0.72
LIME1-201ENST00000309546 KCTD6Q8NC69 237 aa19.56■□□□□ 0.72
LIME1-201ENST00000309546 ATXN7L3BQ96GX2 97 aa19.56■□□□□ 0.72
LIME1-201ENST00000309546 NAF1Q96HR8 494 aaKnown RBP19.56■□□□□ 0.72
LIME1-201ENST00000309546 COQ10AQ96MF6 247 aa19.56■□□□□ 0.72
LIME1-201ENST00000309546 SUDS3Q9H7L9 328 aaPredicted RBP19.56■□□□□ 0.72
LIME1-201ENST00000309546 POLR1BQ9H9Y6 1135 aa19.56■□□□□ 0.72
LIME1-201ENST00000309546 GOLGA6AQ9NYA3 693 aa19.56■□□□□ 0.72
LIME1-201ENST00000309546 PHTF1Q9UMS5 762 aa19.56■□□□□ 0.72
LIME1-201ENST00000309546 SATB2Q9UPW6 733 aa19.56■□□□□ 0.72
LIME1-201ENST00000309546 TTLL3Q9Y4R7 772 aa19.56■□□□□ 0.72
LIME1-201ENST00000309546 CBFA2T2O43439 604 aa19.55■□□□□ 0.72
LIME1-201ENST00000309546 PROSCO94903 275 aa19.55■□□□□ 0.72
LIME1-201ENST00000309546 HEXIM1O94992 359 aaKnown RBP19.55■□□□□ 0.72
LIME1-201ENST00000309546 H2AFZP0C0S5 128 aa19.55■□□□□ 0.72
LIME1-201ENST00000309546 CTPS1P17812 591 aa19.55■□□□□ 0.72
LIME1-201ENST00000309546 GARSP41250 739 aaKnown RBP19.55■□□□□ 0.72
LIME1-201ENST00000309546 ARSEP51690 589 aa19.55■□□□□ 0.72
LIME1-201ENST00000309546 TAS2R40P59535 323 aa19.55■□□□□ 0.72
LIME1-201ENST00000309546 ARHGEF7Q14155 803 aa19.55■□□□□ 0.72
LIME1-201ENST00000309546 SPIDRQ14159 915 aa19.55■□□□□ 0.72
LIME1-201ENST00000309546 ITPR1Q14643 2758 aa19.55■□□□□ 0.72
LIME1-201ENST00000309546 SLC18A3Q16572 532 aa19.55■□□□□ 0.72
LIME1-201ENST00000309546 ARMC12Q5T9G4 340 aa19.55■□□□□ 0.72
LIME1-201ENST00000309546 PNCKQ6P2M8 343 aa19.55■□□□□ 0.72
LIME1-201ENST00000309546 FOXR1Q6PIV2 292 aa19.55■□□□□ 0.72
LIME1-201ENST00000309546 H2AFVQ71UI9 128 aa19.55■□□□□ 0.72
LIME1-201ENST00000309546 TAF8Q7Z7C8 310 aa19.55■□□□□ 0.72
LIME1-201ENST00000309546 FAM71BQ8TC56 605 aa19.55■□□□□ 0.72
LIME1-201ENST00000309546 CCDC74AQ96AQ1 378 aa19.55■□□□□ 0.72
LIME1-201ENST00000309546 RBM15Q96T37 977 aaKnown RBP eCLIP19.55■□□□□ 0.72
LIME1-201ENST00000309546 LGMNQ99538 433 aa19.55■□□□□ 0.72
LIME1-201ENST00000309546 SEMA3CQ99985 751 aa19.55■□□□□ 0.72
LIME1-201ENST00000309546 LGR4Q9BXB1 951 aa19.55■□□□□ 0.72
LIME1-201ENST00000309546 CYP4F12Q9HCS2 524 aa19.55■□□□□ 0.72
LIME1-201ENST00000309546 UVRAGQ9P2Y5 699 aa19.55■□□□□ 0.72
LIME1-201ENST00000309546 ENTPD2Q9Y5L3 495 aa19.55■□□□□ 0.72
LIME1-201ENST00000309546 DGKBQ9Y6T7 804 aa19.55■□□□□ 0.72
LIME1-201ENST00000309546 KIF26BQ2KJY2 2108 aa19.55■□□□□ 0.72
LIME1-201ENST00000309546 NBEAQ8NFP9 2946 aa19.54■□□□□ 0.72
LIME1-201ENST00000309546 NPIPB15A6NHN6 443 aaPredicted RBP19.54■□□□□ 0.72
LIME1-201ENST00000309546 TCEA3O75764 348 aa19.54■□□□□ 0.72
LIME1-201ENST00000309546 PGLSO95336 258 aa19.54■□□□□ 0.72
LIME1-201ENST00000309546 LHCGRP22888 699 aa19.54■□□□□ 0.72
LIME1-201ENST00000309546 HNRNPH3P31942 346 aaKnown RBP19.54■□□□□ 0.72
LIME1-201ENST00000309546 ETV3P41162 512 aa19.54■□□□□ 0.72
LIME1-201ENST00000309546 LSSP48449 732 aa19.54■□□□□ 0.72
LIME1-201ENST00000309546 PCBP4P57723 403 aaKnown RBP19.54■□□□□ 0.72
LIME1-201ENST00000309546 GALNT2Q10471 571 aa19.54■□□□□ 0.72
LIME1-201ENST00000309546 TRIM14Q14142 442 aa19.54■□□□□ 0.72
LIME1-201ENST00000309546 PTPRRQ15256 657 aa19.54■□□□□ 0.72
LIME1-201ENST00000309546 ANKRD20A8PQ5CZ79 823 aa19.54■□□□□ 0.72
LIME1-201ENST00000309546 RALGPS1Q5JS13 557 aa19.54■□□□□ 0.72
LIME1-201ENST00000309546 SPECC1LQ69YQ0 1117 aa19.54■□□□□ 0.72
LIME1-201ENST00000309546 TIGD7Q6NT04 549 aaPredicted RBP19.54■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms