RNA–Protein interactions for RNA: ENST00000278386.10

CD44-203, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 484 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-203ENST00000278386 ZNF571Q7Z3V5 609 aaPredicted RBP12.81□□□□□ -0.36
CD44-203ENST00000278386 CLEC14AQ86T13 490 aa12.81□□□□□ -0.36
CD44-203ENST00000278386 CCNJLQ8IV13 435 aa12.81□□□□□ -0.36
CD44-203ENST00000278386 ZNF843Q8N446 348 aa12.81□□□□□ -0.36
CD44-203ENST00000278386 FBXO39Q8N4B4 442 aa12.81□□□□□ -0.36
CD44-203ENST00000278386 ARFGAP1Q8N6T3 406 aa12.81□□□□□ -0.36
CD44-203ENST00000278386 Q8N9G6 341 aaPredicted RBP12.81□□□□□ -0.36
CD44-203ENST00000278386 FNIP1Q8TF40 1166 aa12.81□□□□□ -0.36
CD44-203ENST00000278386 FUBP1Q96AE4 644 aaKnown RBP12.81□□□□□ -0.36
CD44-203ENST00000278386 ECHDC3Q96DC8 303 aa12.81□□□□□ -0.36
CD44-203ENST00000278386 NUS1Q96E22 293 aa12.81□□□□□ -0.36
CD44-203ENST00000278386 TRIM11Q96F44 468 aa12.81□□□□□ -0.36
CD44-203ENST00000278386 LRRN3Q9H3W5 708 aa12.81□□□□□ -0.36
CD44-203ENST00000278386 CYP4F12Q9HCS2 524 aa12.81□□□□□ -0.36
CD44-203ENST00000278386 RTN4Q9NQC3 1192 aaKnown RBP12.81□□□□□ -0.36
CD44-203ENST00000278386 B4GALT6Q9UBX8 382 aa12.81□□□□□ -0.36
CD44-203ENST00000278386 DGKBQ9Y6T7 804 aa12.81□□□□□ -0.36
CD44-203ENST00000278386 KALRNO60229 2985 aa12.8□□□□□ -0.36
CD44-203ENST00000278386 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP12.8□□□□□ -0.36
CD44-203ENST00000278386 A0A1W2PQM1 296 aa12.8□□□□□ -0.36
CD44-203ENST00000278386 CFAP69A5D8W1 941 aa12.8□□□□□ -0.36
CD44-203ENST00000278386 GOLGA6CA6NDK9 693 aa12.8□□□□□ -0.36
CD44-203ENST00000278386 GOLGA6BA6NDN3 693 aa12.8□□□□□ -0.36
CD44-203ENST00000278386 SMTNL1A8MU46 457 aa12.8□□□□□ -0.36
CD44-203ENST00000278386 ZIC2O95409 532 aaPredicted RBP12.8□□□□□ -0.36
CD44-203ENST00000278386 FTLP02792 175 aaPredicted RBP12.8□□□□□ -0.36
CD44-203ENST00000278386 JMJD7P0C870 316 aa12.8□□□□□ -0.36
CD44-203ENST00000278386 GOLGA6DP0CG33 693 aa12.8□□□□□ -0.36
CD44-203ENST00000278386 HGFP14210 728 aa12.8□□□□□ -0.36
CD44-203ENST00000278386 UGT1A5P35504 534 aa12.8□□□□□ -0.36
CD44-203ENST00000278386 EIF3IQ13347 325 aaKnown RBP12.8□□□□□ -0.36
CD44-203ENST00000278386 DPYSQ14117 519 aa12.8□□□□□ -0.36
CD44-203ENST00000278386 MAP9Q49MG5 647 aa12.8□□□□□ -0.36
CD44-203ENST00000278386 TDRD12Q587J7 1177 aaKnown RBP12.8□□□□□ -0.36
CD44-203ENST00000278386 E4F1Q66K89 784 aaPredicted RBP12.8□□□□□ -0.36
CD44-203ENST00000278386 PCSK4Q6UW60 755 aa12.8□□□□□ -0.36
CD44-203ENST00000278386 TMCO3Q6UWJ1 677 aa12.8□□□□□ -0.36
CD44-203ENST00000278386 CCDC81Q6ZN84 652 aa12.8□□□□□ -0.36
CD44-203ENST00000278386 CYP4V2Q6ZWL3 525 aaPredicted RBP12.8□□□□□ -0.36
CD44-203ENST00000278386 ZNF605Q86T29 641 aa12.8□□□□□ -0.36
CD44-203ENST00000278386 PSTKQ8IV42 348 aaKnown RBP12.8□□□□□ -0.36
CD44-203ENST00000278386 TP53INP2Q8IXH6 220 aa12.8□□□□□ -0.36
CD44-203ENST00000278386 BBS5Q8N3I7 341 aa12.8□□□□□ -0.36
CD44-203ENST00000278386 ATPAF2Q8N5M1 289 aa12.8□□□□□ -0.36
CD44-203ENST00000278386 LZTR1Q8N653 840 aa12.8□□□□□ -0.36
CD44-203ENST00000278386 FAM46DQ8NEK8 389 aa12.8□□□□□ -0.36
CD44-203ENST00000278386 GPR156Q8NFN8 814 aa12.8□□□□□ -0.36
CD44-203ENST00000278386 HSPH1Q92598 858 aa12.8□□□□□ -0.36
CD44-203ENST00000278386 TMEM74Q96NL1 305 aa12.8□□□□□ -0.36
CD44-203ENST00000278386 DPEP2Q9H4A9 486 aa12.8□□□□□ -0.36
CD44-203ENST00000278386 MRPL47Q9HD33 250 aaKnown RBP12.8□□□□□ -0.36
CD44-203ENST00000278386 STAU2Q9NUL3 570 aaKnown RBP eCLIP12.8□□□□□ -0.36
CD44-203ENST00000278386 GOLGA6AQ9NYA3 693 aa12.8□□□□□ -0.36
CD44-203ENST00000278386 CWC15Q9P013 229 aaKnown RBP12.8□□□□□ -0.36
CD44-203ENST00000278386 PISDQ9UG56 409 aa12.8□□□□□ -0.36
CD44-203ENST00000278386 PRSS38A1L453 326 aa12.79□□□□□ -0.36
CD44-203ENST00000278386 TTC24A2A3L6 582 aaPredicted RBP12.79□□□□□ -0.36
CD44-203ENST00000278386 TMX2-CTNND1H3BSU7 103 aa12.79□□□□□ -0.36
CD44-203ENST00000278386 TRAFD1O14545 582 aaPredicted RBP12.79□□□□□ -0.36
CD44-203ENST00000278386 SOCS5O75159 536 aa12.79□□□□□ -0.36
CD44-203ENST00000278386 MYBL1P10243 752 aa12.79□□□□□ -0.36
CD44-203ENST00000278386 GZMAP12544 262 aa12.79□□□□□ -0.36
CD44-203ENST00000278386 NFKBIAP25963 317 aa12.79□□□□□ -0.36
CD44-203ENST00000278386 HSPA9P38646 679 aaKnown RBP12.79□□□□□ -0.36
CD44-203ENST00000278386 SKOR1P84550 965 aa12.79□□□□□ -0.36
CD44-203ENST00000278386 NSUN2Q08J23 767 aaKnown RBP eCLIP12.79□□□□□ -0.36
CD44-203ENST00000278386 SLC10A7Q0GE19 358 aa12.79□□□□□ -0.36
CD44-203ENST00000278386 CLN3Q13286 438 aa12.79□□□□□ -0.36
CD44-203ENST00000278386 ARHGEF7Q14155 803 aa12.79□□□□□ -0.36
CD44-203ENST00000278386 CNGA3Q16281 694 aa12.79□□□□□ -0.36
CD44-203ENST00000278386 TSR1Q2NL82 804 aaKnown RBP12.79□□□□□ -0.36
CD44-203ENST00000278386 C14orf28Q4W4Y0 310 aa12.79□□□□□ -0.36
CD44-203ENST00000278386 KIAA1614Q5VZ46 1190 aa12.79□□□□□ -0.36
CD44-203ENST00000278386 SPECC1LQ69YQ0 1117 aa12.79□□□□□ -0.36
CD44-203ENST00000278386 KIAA1524Q8TCG1 905 aa12.79□□□□□ -0.36
CD44-203ENST00000278386 NSMCE1Q8WV22 266 aa12.79□□□□□ -0.36
CD44-203ENST00000278386 ZNF599Q96NL3 588 aa12.79□□□□□ -0.36
CD44-203ENST00000278386 PSKH2Q96QS6 385 aa12.79□□□□□ -0.36
CD44-203ENST00000278386 LGR4Q9BXB1 951 aa12.79□□□□□ -0.36
CD44-203ENST00000278386 TMEM168Q9H0V1 697 aa12.79□□□□□ -0.36
CD44-203ENST00000278386 CARS2Q9HA77 564 aaKnown RBP12.79□□□□□ -0.36
CD44-203ENST00000278386 PHPT1Q9NRX4 125 aaPredicted RBP12.79□□□□□ -0.36
CD44-203ENST00000278386 ATXN7L1Q9ULK2 861 aaPredicted RBP12.79□□□□□ -0.36
CD44-203ENST00000278386 LOXL2Q9Y4K0 774 aa12.79□□□□□ -0.36
CD44-203ENST00000278386 COL6A6A6NMZ7 2263 aa12.79□□□□□ -0.36
CD44-203ENST00000278386 CAPN8A6NHC0 703 aa12.78□□□□□ -0.36
CD44-203ENST00000278386 K7ENP7 123 aa12.78□□□□□ -0.36
CD44-203ENST00000278386 PDE2AO00408 941 aaPredicted RBP12.78□□□□□ -0.36
CD44-203ENST00000278386 DDX3XO00571 662 aaKnown RBP eCLIP12.78□□□□□ -0.36
CD44-203ENST00000278386 TNFRSF10CO14798 259 aa12.78□□□□□ -0.36
CD44-203ENST00000278386 NOBOXO60393 691 aa12.78□□□□□ -0.36
CD44-203ENST00000278386 CYP2A6P11509 494 aaPredicted RBP12.78□□□□□ -0.36
CD44-203ENST00000278386 MYCLP1P12525 358 aaPredicted RBP12.78□□□□□ -0.36
CD44-203ENST00000278386 SKILP12757 684 aa12.78□□□□□ -0.36
CD44-203ENST00000278386 PLA2G2AP14555 144 aa12.78□□□□□ -0.36
CD44-203ENST00000278386 GLB1P16278 677 aa12.78□□□□□ -0.36
CD44-203ENST00000278386 GM2AP17900 193 aa12.78□□□□□ -0.36
CD44-203ENST00000278386 IL1R2P27930 398 aa12.78□□□□□ -0.36
CD44-203ENST00000278386 SLC5A2P31639 672 aa12.78□□□□□ -0.36
CD44-203ENST00000278386 CCKBRP32239 447 aa12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms