RNA–Protein interactions for RNA: ENST00000217402.2

CHMP4B-201, Transcript of charged multivesicular body protein 4B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CHMP4B, Length 1,646 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4B-201ENST00000217402 AP3B1O00203 1094 aa27.3■■□□□ 1.96
CHMP4B-201ENST00000217402 CLDN7O95471 211 aa27.3■■□□□ 1.96
CHMP4B-201ENST00000217402 MLNP12872 115 aa27.3■■□□□ 1.96
CHMP4B-201ENST00000217402 OXTRP30559 389 aa27.3■■□□□ 1.96
CHMP4B-201ENST00000217402 CAV1Q03135 178 aa27.3■■□□□ 1.96
CHMP4B-201ENST00000217402 MSLNQ13421 630 aaPredicted RBP27.3■■□□□ 1.96
CHMP4B-201ENST00000217402 ARHGEF7Q14155 803 aa27.3■■□□□ 1.96
CHMP4B-201ENST00000217402 CNGA3Q16281 694 aa27.3■■□□□ 1.96
CHMP4B-201ENST00000217402 CCDC38Q502W7 563 aa27.3■■□□□ 1.96
CHMP4B-201ENST00000217402 USP39Q53GS9 565 aaKnown RBP27.3■■□□□ 1.96
CHMP4B-201ENST00000217402 SPACA7Q96KW9 195 aa27.3■■□□□ 1.96
CHMP4B-201ENST00000217402 GPR63Q9BZJ6 419 aa27.3■■□□□ 1.96
CHMP4B-201ENST00000217402 ZDHHC18Q9NUE0 388 aa27.3■■□□□ 1.96
CHMP4B-201ENST00000217402 BFARQ9NZS9 450 aa27.3■■□□□ 1.96
CHMP4B-201ENST00000217402 TBC1D3DA0A087WVF3 549 aa27.3■■□□□ 1.96
CHMP4B-201ENST00000217402 TBC1D3IA0A087WXS9 549 aa27.3■■□□□ 1.96
CHMP4B-201ENST00000217402 TBC1D3EA0A087X179 549 aa27.3■■□□□ 1.96
CHMP4B-201ENST00000217402 TBC1D3KA0A087X1G2 549 aa27.3■■□□□ 1.96
CHMP4B-201ENST00000217402 TBC1D3FA6NER0 549 aaPredicted RBP27.3■■□□□ 1.96
CHMP4B-201ENST00000217402 GOLGA8CPA6NN73 597 aa27.3■■□□□ 1.96
CHMP4B-201ENST00000217402 TBC1D3LB9A6J9 549 aa27.3■■□□□ 1.96
CHMP4B-201ENST00000217402 BANF1O75531 89 aa27.3■■□□□ 1.96
CHMP4B-201ENST00000217402 SEMA4FO95754 770 aa27.3■■□□□ 1.96
CHMP4B-201ENST00000217402 ELFN1P0C7U0 828 aa27.3■■□□□ 1.96
CHMP4B-201ENST00000217402 TBC1D3HP0C7X1 549 aa27.3■■□□□ 1.96
CHMP4B-201ENST00000217402 HIF1AQ16665 826 aa27.3■■□□□ 1.96
CHMP4B-201ENST00000217402 TBC1D3GQ6DHY5 549 aa27.3■■□□□ 1.96
CHMP4B-201ENST00000217402 TBC1D3CQ6IPX1 549 aa27.3■■□□□ 1.96
CHMP4B-201ENST00000217402 TBC1D3Q8IZP1 549 aaPredicted RBP27.3■■□□□ 1.96
CHMP4B-201ENST00000217402 MPP5Q8N3R9 675 aa27.3■■□□□ 1.96
CHMP4B-201ENST00000217402 CXorf40AQ8TE69 158 aa27.3■■□□□ 1.96
CHMP4B-201ENST00000217402 SYBUQ9NX95 663 aa27.3■■□□□ 1.96
CHMP4B-201ENST00000217402 WSB2Q9NYS7 404 aaPredicted RBP27.3■■□□□ 1.96
CHMP4B-201ENST00000217402 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP27.3■■□□□ 1.96
CHMP4B-201ENST00000217402 HACD3Q9P035 362 aa27.3■■□□□ 1.96
CHMP4B-201ENST00000217402 ARL5AQ9Y689 179 aa27.3■■□□□ 1.96
CHMP4B-201ENST00000217402 NUMA1Q14980 2115 aa27.29■■□□□ 1.96
CHMP4B-201ENST00000217402 TSPAN6O43657 245 aa27.29■■□□□ 1.96
CHMP4B-201ENST00000217402 BUD23O43709 281 aaKnown RBP27.29■■□□□ 1.96
CHMP4B-201ENST00000217402 MMP20O60882 483 aa27.29■■□□□ 1.96
CHMP4B-201ENST00000217402 MAGEA3P43357 314 aa27.29■■□□□ 1.96
CHMP4B-201ENST00000217402 LIG3P49916 1009 aa27.29■■□□□ 1.96
CHMP4B-201ENST00000217402 ARL4CP56559 192 aa27.29■■□□□ 1.96
CHMP4B-201ENST00000217402 CUL1Q13616 776 aa27.29■■□□□ 1.96
CHMP4B-201ENST00000217402 ANGPT1Q15389 498 aa27.29■■□□□ 1.96
CHMP4B-201ENST00000217402 CDKN3Q16667 212 aa27.29■■□□□ 1.96
CHMP4B-201ENST00000217402 TMEM52BQ4KMG9 183 aa27.29■■□□□ 1.96
CHMP4B-201ENST00000217402 PDIK1LQ8N165 341 aa27.29■■□□□ 1.96
CHMP4B-201ENST00000217402 ZCCHC9Q8N567 271 aaKnown RBP27.29■■□□□ 1.96
CHMP4B-201ENST00000217402 FRMD8Q9BZ67 464 aaPredicted RBP27.29■■□□□ 1.96
CHMP4B-201ENST00000217402 ZFYVE1Q9HBF4 777 aa27.29■■□□□ 1.96
CHMP4B-201ENST00000217402 PREBQ9HCU5 417 aa27.29■■□□□ 1.96
CHMP4B-201ENST00000217402 CCDC163A0A0D9SF12 145 aa27.28■■□□□ 1.96
CHMP4B-201ENST00000217402 CCDC78A2IDD5 438 aa27.28■■□□□ 1.96
CHMP4B-201ENST00000217402 LRRC72A6NJI9 287 aa27.28■■□□□ 1.96
CHMP4B-201ENST00000217402 NPY2RP49146 381 aa27.28■■□□□ 1.96
CHMP4B-201ENST00000217402 BBS9Q3SYG4 887 aa27.28■■□□□ 1.96
CHMP4B-201ENST00000217402 MSS51Q4VC12 460 aa27.28■■□□□ 1.96
CHMP4B-201ENST00000217402 WDR5BQ86VZ2 330 aa27.28■■□□□ 1.96
CHMP4B-201ENST00000217402 LONP2Q86WA8 852 aa27.28■■□□□ 1.96
CHMP4B-201ENST00000217402 OR2T34Q8NGX1 318 aa27.28■■□□□ 1.96
CHMP4B-201ENST00000217402 BRSK1Q8TDC3 778 aa27.28■■□□□ 1.96
CHMP4B-201ENST00000217402 SRPK1Q96SB4 655 aaKnown RBP27.28■■□□□ 1.96
CHMP4B-201ENST00000217402 GPR174Q9BXC1 333 aa27.28■■□□□ 1.96
CHMP4B-201ENST00000217402 IL22Q9GZX6 179 aa27.28■■□□□ 1.96
CHMP4B-201ENST00000217402 TRABDQ9H4I3 376 aa27.28■■□□□ 1.96
CHMP4B-201ENST00000217402 CUL9Q8IWT3 2517 aa27.28■■□□□ 1.96
CHMP4B-201ENST00000217402 RNGTTO60942 597 aaKnown RBP27.27■■□□□ 1.96
CHMP4B-201ENST00000217402 PPP2CBP62714 309 aa27.27■■□□□ 1.96
CHMP4B-201ENST00000217402 PPP2CAP67775 309 aa27.27■■□□□ 1.96
CHMP4B-201ENST00000217402 DHX9Q08211 1270 aaKnown RBP27.27■■□□□ 1.96
CHMP4B-201ENST00000217402 SEL1L3Q68CR1 1132 aa27.27■■□□□ 1.96
CHMP4B-201ENST00000217402 CASC4Q6P4E1 433 aa27.27■■□□□ 1.96
CHMP4B-201ENST00000217402 LIPIQ6XZB0 460 aa27.27■■□□□ 1.96
CHMP4B-201ENST00000217402 AGGF1Q8N302 714 aaeCLIP27.27■■□□□ 1.96
CHMP4B-201ENST00000217402 TTC30BQ8N4P2 665 aa27.27■■□□□ 1.96
CHMP4B-201ENST00000217402 EID2BQ96D98 161 aa27.27■■□□□ 1.96
CHMP4B-201ENST00000217402 MBD1Q9UIS9 605 aaPredicted RBP27.27■■□□□ 1.96
CHMP4B-201ENST00000217402 NFU1Q9UMS0 254 aa27.27■■□□□ 1.96
CHMP4B-201ENST00000217402 COQ6Q9Y2Z9 468 aa27.27■■□□□ 1.96
CHMP4B-201ENST00000217402 KCTD3Q9Y597 815 aa27.27■■□□□ 1.96
CHMP4B-201ENST00000217402 MYLKQ15746 1914 aa27.27■■□□□ 1.96
CHMP4B-201ENST00000217402 PPFIA2O75334 1257 aa27.27■■□□□ 1.96
CHMP4B-201ENST00000217402 CRTAMO95727 393 aa27.27■■□□□ 1.96
CHMP4B-201ENST00000217402 C6P13671 934 aa27.27■■□□□ 1.96
CHMP4B-201ENST00000217402 ZNF30P17039 623 aa27.27■■□□□ 1.96
CHMP4B-201ENST00000217402 ECHS1P30084 290 aa27.27■■□□□ 1.96
CHMP4B-201ENST00000217402 PTSQ03393 145 aa27.27■■□□□ 1.96
CHMP4B-201ENST00000217402 NAA30Q147X3 362 aaPredicted RBP27.27■■□□□ 1.96
CHMP4B-201ENST00000217402 TAF1AQ15573 450 aaPredicted RBP27.27■■□□□ 1.96
CHMP4B-201ENST00000217402 DNAJC21Q5F1R6 531 aaKnown RBP27.27■■□□□ 1.96
CHMP4B-201ENST00000217402 HP1BP3Q5SSJ5 553 aaPredicted RBP27.27■■□□□ 1.96
CHMP4B-201ENST00000217402 CCDC25Q86WR0 208 aa27.27■■□□□ 1.96
CHMP4B-201ENST00000217402 PPHLN1Q8NEY8 458 aaKnown RBP27.27■■□□□ 1.96
CHMP4B-201ENST00000217402 KDM4CQ9H3R0 1056 aa27.27■■□□□ 1.96
CHMP4B-201ENST00000217402 C6orf106Q9H6K1 298 aaPredicted RBP27.27■■□□□ 1.96
CHMP4B-201ENST00000217402 MAD1L1Q9Y6D9 718 aa27.27■■□□□ 1.96
CHMP4B-201ENST00000217402 A0A1W2PQU0 124 aa27.26■■□□□ 1.95
CHMP4B-201ENST00000217402 IGLON5A6NGN9 336 aa27.26■■□□□ 1.95
CHMP4B-201ENST00000217402 SDR42E2A6NKP2 422 aa27.26■■□□□ 1.95
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms