RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 RPL5P46777 297 aaKnown RBP10.73□□□□□ -0.69
USP28-201ENST00000003302 CLCN2P51788 898 aa10.73□□□□□ -0.69
USP28-201ENST00000003302 CSE1LP55060 971 aaKnown RBP10.73□□□□□ -0.69
USP28-201ENST00000003302 GRB14Q14449 540 aa10.73□□□□□ -0.69
USP28-201ENST00000003302 ACAP2Q15057 778 aa10.73□□□□□ -0.69
USP28-201ENST00000003302 UPP1Q16831 310 aa10.73□□□□□ -0.69
USP28-201ENST00000003302 UNC50Q53HI1 259 aa10.73□□□□□ -0.69
USP28-201ENST00000003302 PCID2Q5JVF3 399 aa10.73□□□□□ -0.69
USP28-201ENST00000003302 ITPRIPL1Q6GPH6 555 aa10.73□□□□□ -0.69
USP28-201ENST00000003302 LARP4Q71RC2 724 aaKnown RBP eCLIP10.73□□□□□ -0.69
USP28-201ENST00000003302 CFAP52Q8N1V2 620 aa10.73□□□□□ -0.69
USP28-201ENST00000003302 TOP6BLQ8N6T0 577 aa10.73□□□□□ -0.69
USP28-201ENST00000003302 GAB3Q8WWW8 586 aa10.73□□□□□ -0.69
USP28-201ENST00000003302 BTBD9Q96Q07 612 aa10.73□□□□□ -0.69
USP28-201ENST00000003302 TDRD1Q9BXT4 1180 aaKnown RBP10.73□□□□□ -0.69
USP28-201ENST00000003302 CNGB3Q9NQW8 809 aa10.73□□□□□ -0.69
USP28-201ENST00000003302 FAM50BQ9Y247 325 aa10.73□□□□□ -0.69
USP28-201ENST00000003302 TRPM7Q96QT4 1865 aa10.72□□□□□ -0.69
USP28-201ENST00000003302 A0A1W2PQH9 124 aa10.72□□□□□ -0.69
USP28-201ENST00000003302 LRPAP1P30533 357 aa10.72□□□□□ -0.69
USP28-201ENST00000003302 PBX3P40426 434 aa10.72□□□□□ -0.69
USP28-201ENST00000003302 IST1P53990 364 aa10.72□□□□□ -0.69
USP28-201ENST00000003302 TRIM32Q13049 653 aa10.72□□□□□ -0.69
USP28-201ENST00000003302 PSMD5Q16401 504 aa10.72□□□□□ -0.69
USP28-201ENST00000003302 CNTN4Q8IWV2 1026 aa10.72□□□□□ -0.69
USP28-201ENST00000003302 CBR4Q8N4T8 237 aa10.72□□□□□ -0.69
USP28-201ENST00000003302 FIBCD1Q8N539 461 aa10.72□□□□□ -0.69
USP28-201ENST00000003302 DNAJB14Q8TBM8 379 aa10.72□□□□□ -0.69
USP28-201ENST00000003302 PPWD1Q96BP3 646 aaKnown RBP10.72□□□□□ -0.69
USP28-201ENST00000003302 DGCR14Q96DF8 476 aaKnown RBP10.72□□□□□ -0.69
USP28-201ENST00000003302 SLC10A4Q96EP9 437 aa10.72□□□□□ -0.69
USP28-201ENST00000003302 IL12RB2Q99665 862 aa10.72□□□□□ -0.69
USP28-201ENST00000003302 COL1A2P08123 1366 aa10.72□□□□□ -0.69
USP28-201ENST00000003302 GOLGA4Q13439 2230 aaKnown RBP10.72□□□□□ -0.69
USP28-201ENST00000003302 GOLGA8CPA6NN73 597 aa10.72□□□□□ -0.69
USP28-201ENST00000003302 PIP5K1BO14986 540 aa10.72□□□□□ -0.69
USP28-201ENST00000003302 IPO13O94829 963 aaKnown RBP10.72□□□□□ -0.69
USP28-201ENST00000003302 ZNF865P0CJ78 1059 aaPredicted RBP10.72□□□□□ -0.69
USP28-201ENST00000003302 POLR2IP36954 125 aaKnown RBP10.72□□□□□ -0.69
USP28-201ENST00000003302 PLCL1Q15111 1095 aa10.72□□□□□ -0.69
USP28-201ENST00000003302 ZRSR2Q15696 482 aaKnown RBP10.72□□□□□ -0.69
USP28-201ENST00000003302 FUT11Q495W5 492 aa10.72□□□□□ -0.69
USP28-201ENST00000003302 NHSL2Q5HYW2 709 aa10.72□□□□□ -0.69
USP28-201ENST00000003302 HABP4Q5JVS0 413 aaKnown RBP10.72□□□□□ -0.69
USP28-201ENST00000003302 RARS2Q5T160 578 aaKnown RBP10.72□□□□□ -0.69
USP28-201ENST00000003302 HECTD2Q5U5R9 776 aa10.72□□□□□ -0.69
USP28-201ENST00000003302 FAM43BQ6ZT52 329 aaPredicted RBP10.72□□□□□ -0.69
USP28-201ENST00000003302 MIB1Q86YT6 1006 aa10.72□□□□□ -0.69
USP28-201ENST00000003302 UBXN10Q96LJ8 280 aa10.72□□□□□ -0.69
USP28-201ENST00000003302 C1orf50Q9BV19 199 aa10.72□□□□□ -0.69
USP28-201ENST00000003302 CMTM6Q9NX76 183 aa10.72□□□□□ -0.69
USP28-201ENST00000003302 COMMD3-BMI1R4GMX3 469 aa10.72□□□□□ -0.69
USP28-201ENST00000003302 SMIM35A0A1B0GVV1 85 aa10.72□□□□□ -0.69
USP28-201ENST00000003302 UBDO15205 165 aa10.72□□□□□ -0.69
USP28-201ENST00000003302 HTRA2O43464 458 aaPredicted RBP10.72□□□□□ -0.69
USP28-201ENST00000003302 CDK14O94921 469 aa10.72□□□□□ -0.69
USP28-201ENST00000003302 IGLV3-25P01717 112 aa10.72□□□□□ -0.69
USP28-201ENST00000003302 CAPNS1P04632 268 aa10.72□□□□□ -0.69
USP28-201ENST00000003302 DESP17661 470 aa10.72□□□□□ -0.69
USP28-201ENST00000003302 CD151P48509 253 aa10.72□□□□□ -0.69
USP28-201ENST00000003302 PFKFB4Q16877 469 aa10.72□□□□□ -0.69
USP28-201ENST00000003302 PAGE3Q5JUK9 113 aa10.72□□□□□ -0.69
USP28-201ENST00000003302 MANEALQ5VSG8 457 aa10.72□□□□□ -0.69
USP28-201ENST00000003302 GDF6Q6KF10 455 aaPredicted RBP10.72□□□□□ -0.69
USP28-201ENST00000003302 KDELC1Q6UW63 502 aa10.72□□□□□ -0.69
USP28-201ENST00000003302 ZNF280BQ86YH2 543 aa10.72□□□□□ -0.69
USP28-201ENST00000003302 TET1Q8NFU7 2136 aa10.72□□□□□ -0.69
USP28-201ENST00000003302 ASB9Q96DX5 294 aa10.72□□□□□ -0.69
USP28-201ENST00000003302 MPHOSPH6Q99547 160 aaKnown RBP10.72□□□□□ -0.69
USP28-201ENST00000003302 CRISPLD1Q9H336 500 aa10.72□□□□□ -0.69
USP28-201ENST00000003302 ABHD16BQ9H3Z7 469 aa10.72□□□□□ -0.69
USP28-201ENST00000003302 PRPF19Q9UMS4 504 aaKnown RBP10.72□□□□□ -0.69
USP28-201ENST00000003302 IQCF5A8MTL0 148 aa10.72□□□□□ -0.69
USP28-201ENST00000003302 IRAK2O43187 625 aa10.72□□□□□ -0.69
USP28-201ENST00000003302 NR4A1P22736 598 aa10.72□□□□□ -0.69
USP28-201ENST00000003302 CCR1P32246 355 aa10.72□□□□□ -0.69
USP28-201ENST00000003302 CA5AP35218 305 aa10.72□□□□□ -0.69
USP28-201ENST00000003302 RGRP47804 291 aa10.72□□□□□ -0.69
USP28-201ENST00000003302 PSEN2P49810 448 aa10.72□□□□□ -0.69
USP28-201ENST00000003302 PRKCQQ04759 706 aa10.72□□□□□ -0.69
USP28-201ENST00000003302 PRPSAP1Q14558 356 aa10.72□□□□□ -0.69
USP28-201ENST00000003302 DBN1Q16643 649 aa10.72□□□□□ -0.69
USP28-201ENST00000003302 C9orf131Q5VYM1 1079 aa10.72□□□□□ -0.69
USP28-201ENST00000003302 NAPEPLDQ6IQ20 393 aa10.72□□□□□ -0.69
USP28-201ENST00000003302 ELMSAN1Q6PJG2 1045 aa10.72□□□□□ -0.69
USP28-201ENST00000003302 C16orf89Q6UX73 402 aa10.72□□□□□ -0.69
USP28-201ENST00000003302 CARM1Q86X55 608 aa10.72□□□□□ -0.69
USP28-201ENST00000003302 IPO11Q9UI26 975 aaKnown RBP10.72□□□□□ -0.69
USP28-201ENST00000003302 TRAF6Q9Y4K3 522 aa10.72□□□□□ -0.69
USP28-201ENST00000003302 MYO16Q9Y6X6 1858 aa10.71□□□□□ -0.69
USP28-201ENST00000003302 DICER1Q9UPY3 1922 aaKnown RBP10.71□□□□□ -0.69
USP28-201ENST00000003302 MRASO14807 208 aa10.71□□□□□ -0.69
USP28-201ENST00000003302 B3GALT4O96024 378 aa10.71□□□□□ -0.69
USP28-201ENST00000003302 PRDX6P30041 224 aa10.71□□□□□ -0.69
USP28-201ENST00000003302 CD52P31358 61 aa10.71□□□□□ -0.69
USP28-201ENST00000003302 NPY2RP49146 381 aa10.71□□□□□ -0.69
USP28-201ENST00000003302 LDLRAD1Q5T700 205 aa10.71□□□□□ -0.69
USP28-201ENST00000003302 CILP2Q8IUL8 1156 aa10.71□□□□□ -0.69
USP28-201ENST00000003302 CMTR2Q8IYT2 770 aaKnown RBP10.71□□□□□ -0.69
USP28-201ENST00000003302 HS3ST5Q8IZT8 346 aa10.71□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms