RNA–Protein interactions for RNA: ENST00000639659.1

SYNE2-228, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best) BASIC

Gene SYNE2, Length 1,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-228ENST00000639659 TLE1Q04724 770 aa15.1■□□□□ 0.01
SYNE2-228ENST00000639659 MTM1Q13496 603 aa15.1■□□□□ 0.01
SYNE2-228ENST00000639659 BECN1Q14457 450 aa15.1■□□□□ 0.01
SYNE2-228ENST00000639659 CLCA4Q14CN2 919 aa15.1■□□□□ 0.01
SYNE2-228ENST00000639659 C16orf72Q14CZ0 275 aa15.1■□□□□ 0.01
SYNE2-228ENST00000639659 MIIPQ5JXC2 388 aa15.1■□□□□ 0.01
SYNE2-228ENST00000639659 TMEM164Q5U3C3 297 aa15.1■□□□□ 0.01
SYNE2-228ENST00000639659 SPECC1LQ69YQ0 1117 aa15.1■□□□□ 0.01
SYNE2-228ENST00000639659 XKR5Q6UX68 686 aa15.1■□□□□ 0.01
SYNE2-228ENST00000639659 ARCQ7LC44 396 aa15.1■□□□□ 0.01
SYNE2-228ENST00000639659 STRADAQ7RTN6 431 aa15.1■□□□□ 0.01
SYNE2-228ENST00000639659 SLFN11Q7Z7L1 901 aa15.1■□□□□ 0.01
SYNE2-228ENST00000639659 DNAAF5Q86Y56 855 aa15.1■□□□□ 0.01
SYNE2-228ENST00000639659 CAMK1DQ8IU85 385 aa15.1■□□□□ 0.01
SYNE2-228ENST00000639659 RCBTB1Q8NDN9 531 aa15.1■□□□□ 0.01
SYNE2-228ENST00000639659 CCL4L1Q8NHW4 92 aa15.1■□□□□ 0.01
SYNE2-228ENST00000639659 SELENOOQ9BVL4 669 aa15.1■□□□□ 0.01
SYNE2-228ENST00000639659 ATP8A1Q9Y2Q0 1164 aa15.1■□□□□ 0.01
SYNE2-228ENST00000639659 MFHAS1Q9Y4C4 1052 aa15.1■□□□□ 0.01
SYNE2-228ENST00000639659 COL12A1Q99715 3063 aa15.1■□□□□ 0.01
SYNE2-228ENST00000639659 RECQL5O94762 991 aaPredicted RBP15.09■□□□□ 0.01
SYNE2-228ENST00000639659 ELFN1P0C7U0 828 aa15.09■□□□□ 0.01
SYNE2-228ENST00000639659 KRT3P12035 628 aa15.09■□□□□ 0.01
SYNE2-228ENST00000639659 CCL4P13236 92 aa15.09■□□□□ 0.01
SYNE2-228ENST00000639659 GPD1P21695 349 aa15.09■□□□□ 0.01
SYNE2-228ENST00000639659 ALDH4A1P30038 563 aa15.09■□□□□ 0.01
SYNE2-228ENST00000639659 MMP12P39900 470 aa15.09■□□□□ 0.01
SYNE2-228ENST00000639659 PTPN9P43378 593 aa15.09■□□□□ 0.01
SYNE2-228ENST00000639659 SUOXP51687 545 aa15.09■□□□□ 0.01
SYNE2-228ENST00000639659 ZFP36L1Q07352 338 aaKnown RBP15.09■□□□□ 0.01
SYNE2-228ENST00000639659 CYTH1Q15438 398 aa15.09■□□□□ 0.01
SYNE2-228ENST00000639659 INO80DQ53TQ3 878 aaPredicted RBP15.09■□□□□ 0.01
SYNE2-228ENST00000639659 DPY19L2P1Q6NXN4 242 aa15.09■□□□□ 0.01
SYNE2-228ENST00000639659 ZNF574Q6ZN55 896 aaPredicted RBP15.09■□□□□ 0.01
SYNE2-228ENST00000639659 ZSWIM9Q86XI8 627 aa15.09■□□□□ 0.01
SYNE2-228ENST00000639659 FUBP1Q96AE4 644 aaKnown RBP15.09■□□□□ 0.01
SYNE2-228ENST00000639659 TMEM159Q96B96 161 aa15.09■□□□□ 0.01
SYNE2-228ENST00000639659 CELF6Q96J87 481 aaKnown RBP15.09■□□□□ 0.01
SYNE2-228ENST00000639659 SLC25A18Q9H1K4 315 aa15.09■□□□□ 0.01
SYNE2-228ENST00000639659 RETREG1Q9H6L5 497 aa15.09■□□□□ 0.01
SYNE2-228ENST00000639659 SEPT11Q9NVA2 429 aaKnown RBP15.09■□□□□ 0.01
SYNE2-228ENST00000639659 APPL1Q9UKG1 709 aa15.09■□□□□ 0.01
SYNE2-228ENST00000639659 ZFC3H1O60293 1989 aaKnown RBP15.09■□□□□ 0.01
SYNE2-228ENST00000639659 PTPN13Q12923 2485 aa15.08■□□□□ 0.01
SYNE2-228ENST00000639659 A0A1W2PQC6 194 aa15.08■□□□□ 0
SYNE2-228ENST00000639659 GOLGA6CA6NDK9 693 aa15.08■□□□□ 0
SYNE2-228ENST00000639659 GOLGA6BA6NDN3 693 aa15.08■□□□□ 0
SYNE2-228ENST00000639659 RHPN2P1A8MT19 583 aa15.08■□□□□ 0
SYNE2-228ENST00000639659 GOLGA6DP0CG33 693 aa15.08■□□□□ 0
SYNE2-228ENST00000639659 MMP8P22894 467 aa15.08■□□□□ 0
SYNE2-228ENST00000639659 KELP23276 732 aa15.08■□□□□ 0
SYNE2-228ENST00000639659 ATP1A2P50993 1020 aa15.08■□□□□ 0
SYNE2-228ENST00000639659 OR1D5P58170 312 aa15.08■□□□□ 0
SYNE2-228ENST00000639659 KIAA1024LP59773 190 aa15.08■□□□□ 0
SYNE2-228ENST00000639659 SERINC3Q13530 473 aa15.08■□□□□ 0
SYNE2-228ENST00000639659 HLTFQ14527 1009 aaKnown RBP eCLIP15.08■□□□□ 0
SYNE2-228ENST00000639659 ACOX1Q15067 660 aa15.08■□□□□ 0
SYNE2-228ENST00000639659 PARP15Q460N3 678 aa15.08■□□□□ 0
SYNE2-228ENST00000639659 BRAT1Q6PJG6 821 aa15.08■□□□□ 0
SYNE2-228ENST00000639659 PIM3Q86V86 326 aa15.08■□□□□ 0
SYNE2-228ENST00000639659 SLITRK4Q8IW52 837 aa15.08■□□□□ 0
SYNE2-228ENST00000639659 IL22RA1Q8N6P7 574 aa15.08■□□□□ 0
SYNE2-228ENST00000639659 MLKLQ8NB16 471 aa15.08■□□□□ 0
SYNE2-228ENST00000639659 KIAA1524Q8TCG1 905 aa15.08■□□□□ 0
SYNE2-228ENST00000639659 NTAN1Q96AB6 310 aa15.08■□□□□ 0
SYNE2-228ENST00000639659 NUDT22Q9BRQ3 303 aa15.08■□□□□ 0
SYNE2-228ENST00000639659 NAA15Q9BXJ9 866 aaKnown RBP15.08■□□□□ 0
SYNE2-228ENST00000639659 WDR26Q9H7D7 661 aa15.08■□□□□ 0
SYNE2-228ENST00000639659 CATSPERBQ9H7T0 1116 aa15.08■□□□□ 0
SYNE2-228ENST00000639659 CARS2Q9HA77 564 aaKnown RBP15.08■□□□□ 0
SYNE2-228ENST00000639659 GOLGA6AQ9NYA3 693 aa15.08■□□□□ 0
SYNE2-228ENST00000639659 TAB2Q9NYJ8 693 aa15.08■□□□□ 0
SYNE2-228ENST00000639659 NOCTQ9UK39 431 aaKnown RBP15.08■□□□□ 0
SYNE2-228ENST00000639659 DGKBQ9Y6T7 804 aa15.08■□□□□ 0
SYNE2-228ENST00000639659 UBR5O95071 2799 aaPredicted RBP15.07■□□□□ 0
SYNE2-228ENST00000639659 TSPAN11A1L157 253 aa15.07■□□□□ 0
SYNE2-228ENST00000639659 STMND1H3BQB6 276 aa15.07■□□□□ 0
SYNE2-228ENST00000639659 J3KR12 359 aa15.07■□□□□ 0
SYNE2-228ENST00000639659 CCP110O43303 1012 aa15.07■□□□□ 0
SYNE2-228ENST00000639659 BUB1BO60566 1050 aaPredicted RBP15.07■□□□□ 0
SYNE2-228ENST00000639659 SERPINA4P29622 427 aa15.07■□□□□ 0
SYNE2-228ENST00000639659 RFC1P35251 1148 aaPredicted RBP15.07■□□□□ 0
SYNE2-228ENST00000639659 NSFP46459 744 aaKnown RBP15.07■□□□□ 0
SYNE2-228ENST00000639659 YBEYP58557 167 aaPredicted RBP15.07■□□□□ 0
SYNE2-228ENST00000639659 FMO1Q01740 532 aa15.07■□□□□ 0
SYNE2-228ENST00000639659 CDR2Q01850 454 aa15.07■□□□□ 0
SYNE2-228ENST00000639659 GRM3Q14832 879 aa15.07■□□□□ 0
SYNE2-228ENST00000639659 SKIDA1Q1XH10 827 aa15.07■□□□□ 0
SYNE2-228ENST00000639659 DENND2CQ68D51 928 aa15.07■□□□□ 0
SYNE2-228ENST00000639659 SMYD5Q6GMV2 418 aa15.07■□□□□ 0
SYNE2-228ENST00000639659 PMEPA1Q969W9 287 aa15.07■□□□□ 0
SYNE2-228ENST00000639659 CCDC74BQ96LY2 380 aa15.07■□□□□ 0
SYNE2-228ENST00000639659 FUCA2Q9BTY2 467 aa15.07■□□□□ 0
SYNE2-228ENST00000639659 LGR4Q9BXB1 951 aa15.07■□□□□ 0
SYNE2-228ENST00000639659 STK33Q9BYT3 514 aa15.07■□□□□ 0
SYNE2-228ENST00000639659 ATP13A3Q9H7F0 1226 aa15.07■□□□□ 0
SYNE2-228ENST00000639659 NLRC4Q9NPP4 1024 aa15.07■□□□□ 0
SYNE2-228ENST00000639659 ADAM22Q9P0K1 906 aa15.07■□□□□ 0
SYNE2-228ENST00000639659 SEPT3Q9UH03 358 aa15.07■□□□□ 0
SYNE2-228ENST00000639659 DOPEY2Q9Y3R5 2298 aa15.06■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms