RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 CLCN3P51790 818 aa4.14□□□□□ -1.75
CD44-239ENST00000639002 RUNX2Q13950 521 aa4.14□□□□□ -1.75
CD44-239ENST00000639002 ATP13A5Q4VNC0 1218 aa4.14□□□□□ -1.75
CD44-239ENST00000639002 SGO1Q5FBB7 561 aa4.14□□□□□ -1.75
CD44-239ENST00000639002 PPP6R3Q5H9R7 873 aaPredicted RBP4.14□□□□□ -1.75
CD44-239ENST00000639002 ZNF667Q5HYK9 610 aa4.14□□□□□ -1.75
CD44-239ENST00000639002 C10orf62Q5T681 223 aaPredicted RBP4.14□□□□□ -1.75
CD44-239ENST00000639002 PMS2CLQ68D20 193 aa4.14□□□□□ -1.75
CD44-239ENST00000639002 LRRC8EQ6NSJ5 796 aa4.14□□□□□ -1.75
CD44-239ENST00000639002 ADAM5Q6NVV9 412 aa4.14□□□□□ -1.75
CD44-239ENST00000639002 WDR73Q6P4I2 378 aa4.14□□□□□ -1.75
CD44-239ENST00000639002 FAM160B2Q86V87 743 aa4.14□□□□□ -1.75
CD44-239ENST00000639002 CHERPQ8IWX8 916 aaKnown RBP4.14□□□□□ -1.75
CD44-239ENST00000639002 KIAA2013Q8IYS2 634 aa4.14□□□□□ -1.75
CD44-239ENST00000639002 ENAHQ8N8S7 591 aaPredicted RBP4.14□□□□□ -1.75
CD44-239ENST00000639002 USP13Q92995 863 aaPredicted RBP4.14□□□□□ -1.75
CD44-239ENST00000639002 WBP1Q96G27 269 aa4.14□□□□□ -1.75
CD44-239ENST00000639002 TMEM19Q96HH6 336 aa4.14□□□□□ -1.75
CD44-239ENST00000639002 FEM1CQ96JP0 617 aa4.14□□□□□ -1.75
CD44-239ENST00000639002 REEP2Q9BRK0 252 aa4.14□□□□□ -1.75
CD44-239ENST00000639002 MXRA8Q9BRK3 442 aa4.14□□□□□ -1.75
CD44-239ENST00000639002 CSTL1Q9H114 145 aa4.14□□□□□ -1.75
CD44-239ENST00000639002 ESRP2Q9H6T0 727 aaKnown RBP4.14□□□□□ -1.75
CD44-239ENST00000639002 SMYD2Q9NRG4 433 aa4.14□□□□□ -1.75
CD44-239ENST00000639002 GAB2Q9UQC2 676 aa4.14□□□□□ -1.75
CD44-239ENST00000639002 PDS5AQ29RF7 1337 aaKnown RBP4.14□□□□□ -1.75
CD44-239ENST00000639002 ATXN2Q99700 1313 aaKnown RBP4.14□□□□□ -1.75
CD44-239ENST00000639002 SLC2A4P14672 509 aa4.13□□□□□ -1.75
CD44-239ENST00000639002 MCM3P25205 808 aa4.13□□□□□ -1.75
CD44-239ENST00000639002 CHATP28329 748 aa4.13□□□□□ -1.75
CD44-239ENST00000639002 TIMP3P35625 211 aa4.13□□□□□ -1.75
CD44-239ENST00000639002 GRK6P43250 576 aa4.13□□□□□ -1.75
CD44-239ENST00000639002 YWHAZP63104 245 aaKnown RBP4.13□□□□□ -1.75
CD44-239ENST00000639002 GRIK3Q13003 919 aa4.13□□□□□ -1.75
CD44-239ENST00000639002 ANKRD1Q15327 319 aa4.13□□□□□ -1.75
CD44-239ENST00000639002 PDCD2Q16342 344 aaPredicted RBP4.13□□□□□ -1.75
CD44-239ENST00000639002 MMEL1Q495T6 779 aa4.13□□□□□ -1.75
CD44-239ENST00000639002 CEP85LQ5SZL2 805 aa4.13□□□□□ -1.75
CD44-239ENST00000639002 MTSS1LQ765P7 747 aa4.13□□□□□ -1.75
CD44-239ENST00000639002 DSG4Q86SJ6 1040 aa4.13□□□□□ -1.75
CD44-239ENST00000639002 SFR1Q86XK3 245 aa4.13□□□□□ -1.75
CD44-239ENST00000639002 C2CD5Q86YS7 1000 aa4.13□□□□□ -1.75
CD44-239ENST00000639002 PLD5Q8N7P1 536 aa4.13□□□□□ -1.75
CD44-239ENST00000639002 USP38Q8NB14 1042 aa4.13□□□□□ -1.75
CD44-239ENST00000639002 LRRC8CQ8TDW0 803 aa4.13□□□□□ -1.75
CD44-239ENST00000639002 RUFY2Q8WXA3 655 aa4.13□□□□□ -1.75
CD44-239ENST00000639002 CD180Q99467 661 aa4.13□□□□□ -1.75
CD44-239ENST00000639002 HAUS8Q9BT25 410 aa4.13□□□□□ -1.75
CD44-239ENST00000639002 FBRSL1Q9HCM7 1045 aaKnown RBP4.13□□□□□ -1.75
CD44-239ENST00000639002 KLHL1Q9NR64 748 aa4.13□□□□□ -1.75
CD44-239ENST00000639002 CTNNAL1Q9UBT7 734 aa4.13□□□□□ -1.75
CD44-239ENST00000639002 SUFUQ9UMX1 484 aa4.13□□□□□ -1.75
CD44-239ENST00000639002 VDAC3Q9Y277 283 aa4.13□□□□□ -1.75
CD44-239ENST00000639002 FAM172BPA6NC97 362 aa4.12□□□□□ -1.75
CD44-239ENST00000639002 IFNL4K9M1U5 179 aa4.12□□□□□ -1.75
CD44-239ENST00000639002 AMBPP02760 352 aa4.12□□□□□ -1.75
CD44-239ENST00000639002 AGAP20933 346 aa4.12□□□□□ -1.75
CD44-239ENST00000639002 GPTP24298 496 aa4.12□□□□□ -1.75
CD44-239ENST00000639002 EFNA5P52803 228 aa4.12□□□□□ -1.75
CD44-239ENST00000639002 ARL4CP56559 192 aa4.12□□□□□ -1.75
CD44-239ENST00000639002 RELQ04864 619 aaPredicted RBP4.12□□□□□ -1.75
CD44-239ENST00000639002 TBL3Q12788 808 aaKnown RBP4.12□□□□□ -1.75
CD44-239ENST00000639002 EFR3AQ14156 821 aa4.12□□□□□ -1.75
CD44-239ENST00000639002 SYT16Q17RD7 645 aa4.12□□□□□ -1.75
CD44-239ENST00000639002 GFRALQ6UXV0 394 aa4.12□□□□□ -1.75
CD44-239ENST00000639002 ODF3L1Q8IXM7 274 aa4.12□□□□□ -1.75
CD44-239ENST00000639002 OTULINQ96BN8 352 aa4.12□□□□□ -1.75
CD44-239ENST00000639002 ELP4Q96EB1 424 aa4.12□□□□□ -1.75
CD44-239ENST00000639002 ZC3HAV1LQ96H79 300 aaKnown RBP4.12□□□□□ -1.75
CD44-239ENST00000639002 EYA3Q99504 573 aa4.12□□□□□ -1.75
CD44-239ENST00000639002 TRMT61BQ9BVS5 477 aaKnown RBP4.12□□□□□ -1.75
CD44-239ENST00000639002 MKKSQ9NPJ1 570 aaPredicted RBP4.12□□□□□ -1.75
CD44-239ENST00000639002 SNTG1Q9NSN8 517 aa4.12□□□□□ -1.75
CD44-239ENST00000639002 ALKBH4Q9NXW9 302 aa4.12□□□□□ -1.75
CD44-239ENST00000639002 PEMTQ9UBM1 199 aa4.12□□□□□ -1.75
CD44-239ENST00000639002 TIPRLO75663 272 aa4.11□□□□□ -1.75
CD44-239ENST00000639002 PCNAP12004 261 aa4.11□□□□□ -1.75
CD44-239ENST00000639002 FGF5P12034 268 aa4.11□□□□□ -1.75
CD44-239ENST00000639002 ETFAP13804 333 aa4.11□□□□□ -1.75
CD44-239ENST00000639002 EIF2S3P41091 472 aaKnown RBP4.11□□□□□ -1.75
CD44-239ENST00000639002 LINC01547P58512 204 aaPredicted RBP4.11□□□□□ -1.75
CD44-239ENST00000639002 RHBDL3P58872 404 aa4.11□□□□□ -1.75
CD44-239ENST00000639002 PHEXP78562 749 aa4.11□□□□□ -1.75
CD44-239ENST00000639002 NEDD9Q14511 834 aa4.11□□□□□ -1.75
CD44-239ENST00000639002 FBXO47Q5MNV8 452 aa4.11□□□□□ -1.75
CD44-239ENST00000639002 WDR45BQ5MNZ6 344 aa4.11□□□□□ -1.75
CD44-239ENST00000639002 SERTAD4-AS1Q5TG53 156 aa4.11□□□□□ -1.75
CD44-239ENST00000639002 ANKRD45Q5TZF3 282 aa4.11□□□□□ -1.75
CD44-239ENST00000639002 HIST2H2BCQ6DN03 193 aa4.11□□□□□ -1.75
CD44-239ENST00000639002 C19orf48Q6RUI8 117 aa4.11□□□□□ -1.75
CD44-239ENST00000639002 TRMT1LQ7Z2T5 733 aaKnown RBP4.11□□□□□ -1.75
CD44-239ENST00000639002 SLC9B2Q86UD5 537 aa4.11□□□□□ -1.75
CD44-239ENST00000639002 TMEM219Q86XT9 240 aa4.11□□□□□ -1.75
CD44-239ENST00000639002 NKAPQ8N5F7 415 aaKnown RBP4.11□□□□□ -1.75
CD44-239ENST00000639002 AGBL3Q8NEM8 1001 aa4.11□□□□□ -1.75
CD44-239ENST00000639002 OR13A1Q8NGR1 328 aa4.11□□□□□ -1.75
CD44-239ENST00000639002 SLC20A1Q8WUM9 679 aa4.11□□□□□ -1.75
CD44-239ENST00000639002 NUF2Q9BZD4 464 aa4.11□□□□□ -1.75
CD44-239ENST00000639002 C17orf75Q9HAS0 396 aa4.11□□□□□ -1.75
CD44-239ENST00000639002 TMEM30AQ9NV96 361 aa4.11□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 58.9 ms