RNA–Protein interactions for RNA: ENST00000636194.1

SCN1A-212, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 8,508 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-212ENST00000636194 SP3Q02447 781 aa6.04□□□□□ -1.44
SCN1A-212ENST00000636194 TLE3Q04726 772 aa6.04□□□□□ -1.44
SCN1A-212ENST00000636194 GRM3Q14832 879 aa6.04□□□□□ -1.44
SCN1A-212ENST00000636194 TYSND1Q2T9J0 566 aa6.04□□□□□ -1.44
SCN1A-212ENST00000636194 CRY2Q49AN0 593 aa6.04□□□□□ -1.44
SCN1A-212ENST00000636194 CTXN3Q4LDR2 81 aa6.04□□□□□ -1.44
SCN1A-212ENST00000636194 ZNF697Q5TEC3 545 aa6.04□□□□□ -1.44
SCN1A-212ENST00000636194 C11orf57Q6ZUT1 292 aaPredicted RBP6.04□□□□□ -1.44
SCN1A-212ENST00000636194 GHDCQ8N2G8 530 aa6.04□□□□□ -1.44
SCN1A-212ENST00000636194 GUF1Q8N442 669 aaKnown RBP6.04□□□□□ -1.44
SCN1A-212ENST00000636194 KAT5Q92993 513 aa6.04□□□□□ -1.44
SCN1A-212ENST00000636194 ALPK1Q96QP1 1244 aa6.04□□□□□ -1.44
SCN1A-212ENST00000636194 INTS2Q9H0H0 1204 aaKnown RBP6.04□□□□□ -1.44
SCN1A-212ENST00000636194 CADP27708 2225 aa6.04□□□□□ -1.44
SCN1A-212ENST00000636194 A0A087X1B8 175 aa6.04□□□□□ -1.44
SCN1A-212ENST00000636194 SCAF4O95104 1147 aaKnown RBP6.04□□□□□ -1.44
SCN1A-212ENST00000636194 PCSK2P16519 638 aa6.04□□□□□ -1.44
SCN1A-212ENST00000636194 IGFBP4P22692 258 aa6.04□□□□□ -1.44
SCN1A-212ENST00000636194 OR1E1P30953 314 aa6.04□□□□□ -1.44
SCN1A-212ENST00000636194 IDH2P48735 452 aaKnown RBP6.04□□□□□ -1.44
SCN1A-212ENST00000636194 PLP2Q04941 152 aa6.04□□□□□ -1.44
SCN1A-212ENST00000636194 RIN1Q13671 783 aa6.04□□□□□ -1.44
SCN1A-212ENST00000636194 MLC1Q15049 377 aa6.04□□□□□ -1.44
SCN1A-212ENST00000636194 RNASEH2BQ5TBB1 312 aaKnown RBP6.04□□□□□ -1.44
SCN1A-212ENST00000636194 DHFR2Q86XF0 187 aa6.04□□□□□ -1.44
SCN1A-212ENST00000636194 GPSM1Q86YR5 675 aa6.04□□□□□ -1.44
SCN1A-212ENST00000636194 CHST4Q8NCG5 386 aa6.04□□□□□ -1.44
SCN1A-212ENST00000636194 GRPEL2Q8TAA5 225 aa6.04□□□□□ -1.44
SCN1A-212ENST00000636194 KAT2AQ92830 837 aa6.04□□□□□ -1.44
SCN1A-212ENST00000636194 TAPBPLQ9BX59 468 aa6.04□□□□□ -1.44
SCN1A-212ENST00000636194 MED28Q9H204 178 aa6.04□□□□□ -1.44
SCN1A-212ENST00000636194 IL1RAPQ9NPH3 570 aa6.04□□□□□ -1.44
SCN1A-212ENST00000636194 FAM49BQ9NUQ9 324 aa6.04□□□□□ -1.44
SCN1A-212ENST00000636194 TOR4AQ9NXH8 423 aa6.04□□□□□ -1.44
SCN1A-212ENST00000636194 C14orf166Q9Y224 244 aaKnown RBP6.04□□□□□ -1.44
SCN1A-212ENST00000636194 HBS1LQ9Y450 684 aaKnown RBP6.04□□□□□ -1.44
SCN1A-212ENST00000636194 CACNA1EQ15878 2313 aa6.04□□□□□ -1.44
SCN1A-212ENST00000636194 KRT36O76013 467 aa6.04□□□□□ -1.44
SCN1A-212ENST00000636194 IPO13O94829 963 aaKnown RBP6.04□□□□□ -1.44
SCN1A-212ENST00000636194 IGHDP01880 384 aa6.04□□□□□ -1.44
SCN1A-212ENST00000636194 ATP5A1P25705 553 aaKnown RBP6.04□□□□□ -1.44
SCN1A-212ENST00000636194 LIFRP42702 1097 aa6.04□□□□□ -1.44
SCN1A-212ENST00000636194 CRKLP46109 303 aaKnown RBP6.04□□□□□ -1.44
SCN1A-212ENST00000636194 GSSP48637 474 aa6.04□□□□□ -1.44
SCN1A-212ENST00000636194 AP2S1P53680 142 aaPredicted RBP6.04□□□□□ -1.44
SCN1A-212ENST00000636194 RAB5BP61020 215 aa6.04□□□□□ -1.44
SCN1A-212ENST00000636194 IL18Q14116 193 aa6.04□□□□□ -1.44
SCN1A-212ENST00000636194 CA9Q16790 459 aa6.04□□□□□ -1.44
SCN1A-212ENST00000636194 OTUD3Q5T2D3 398 aaPredicted RBP6.04□□□□□ -1.44
SCN1A-212ENST00000636194 KDM7AQ6ZMT4 941 aa6.04□□□□□ -1.44
SCN1A-212ENST00000636194 DENND5BQ6ZUT9 1274 aa6.04□□□□□ -1.44
SCN1A-212ENST00000636194 MILR1Q7Z6M3 343 aa6.04□□□□□ -1.44
SCN1A-212ENST00000636194 OFCC1Q8IZS5 231 aa6.04□□□□□ -1.44
SCN1A-212ENST00000636194 ZNF611Q8N823 705 aa6.04□□□□□ -1.44
SCN1A-212ENST00000636194 GOLM1Q8NBJ4 401 aa6.04□□□□□ -1.44
SCN1A-212ENST00000636194 OR2AJ1Q8NGZ0 328 aa6.04□□□□□ -1.44
SCN1A-212ENST00000636194 NAT14Q8WUY8 206 aa6.04□□□□□ -1.44
SCN1A-212ENST00000636194 PIH1D2Q8WWB5 315 aa6.04□□□□□ -1.44
SCN1A-212ENST00000636194 ADIPOR1Q96A54 375 aa6.04□□□□□ -1.44
SCN1A-212ENST00000636194 RAD51AP1Q96B01 352 aa6.04□□□□□ -1.44
SCN1A-212ENST00000636194 AKT1S1Q96B36 256 aa6.04□□□□□ -1.44
SCN1A-212ENST00000636194 C17orf62Q9BQA9 187 aa6.04□□□□□ -1.44
SCN1A-212ENST00000636194 CCNB1IP1Q9NPC3 277 aa6.04□□□□□ -1.44
SCN1A-212ENST00000636194 ZNF225Q9UK10 706 aa6.04□□□□□ -1.44
SCN1A-212ENST00000636194 ACOT9Q9Y305 439 aa6.04□□□□□ -1.44
SCN1A-212ENST00000636194 ALG5Q9Y673 324 aa6.04□□□□□ -1.44
SCN1A-212ENST00000636194 ZMYM4Q5VZL5 1548 aa6.04□□□□□ -1.44
SCN1A-212ENST00000636194 ANXA2P2A6NMY6 339 aa6.03□□□□□ -1.44
SCN1A-212ENST00000636194 ERI2A8K979 691 aaKnown RBP6.03□□□□□ -1.44
SCN1A-212ENST00000636194 RAMP2O60895 175 aa6.03□□□□□ -1.44
SCN1A-212ENST00000636194 ATG12O94817 140 aa6.03□□□□□ -1.44
SCN1A-212ENST00000636194 PAPSS2O95340 614 aaPredicted RBP6.03□□□□□ -1.44
SCN1A-212ENST00000636194 ALDH2P05091 517 aa6.03□□□□□ -1.44
SCN1A-212ENST00000636194 ANXA2P07355 339 aaKnown RBP6.03□□□□□ -1.44
SCN1A-212ENST00000636194 RARAP10276 462 aa6.03□□□□□ -1.44
SCN1A-212ENST00000636194 CHN1P15882 459 aa6.03□□□□□ -1.44
SCN1A-212ENST00000636194 MAGEA4P43358 317 aa6.03□□□□□ -1.44
SCN1A-212ENST00000636194 BCL2L1Q07817 233 aa6.03□□□□□ -1.44
SCN1A-212ENST00000636194 SCRN1Q12765 414 aa6.03□□□□□ -1.44
SCN1A-212ENST00000636194 DNM1P34Q6PK57 102 aa6.03□□□□□ -1.44
SCN1A-212ENST00000636194 C3P1Q6ZMU1 363 aa6.03□□□□□ -1.44
SCN1A-212ENST00000636194 SLC4A5Q9BY07 1137 aa6.03□□□□□ -1.44
SCN1A-212ENST00000636194 CCSER1Q9C0I3 900 aa6.03□□□□□ -1.44
SCN1A-212ENST00000636194 TMEM8AQ9HCN3 771 aa6.03□□□□□ -1.44
SCN1A-212ENST00000636194 POLR1AO95602 1720 aaPredicted RBP6.03□□□□□ -1.44
SCN1A-212ENST00000636194 LAMC3Q9Y6N6 1575 aa6.03□□□□□ -1.44
SCN1A-212ENST00000636194 ABCA10Q8WWZ4 1543 aa6.03□□□□□ -1.44
SCN1A-212ENST00000636194 ARHGEF12Q9NZN5 1544 aa6.03□□□□□ -1.44
SCN1A-212ENST00000636194 A0A0A6YYK5 440 aaPredicted RBP6.03□□□□□ -1.44
SCN1A-212ENST00000636194 PVALEFA0A1B0GWK0 134 aa6.03□□□□□ -1.44
SCN1A-212ENST00000636194 CHEK1O14757 476 aa6.03□□□□□ -1.44
SCN1A-212ENST00000636194 CLOCKO15516 846 aa6.03□□□□□ -1.44
SCN1A-212ENST00000636194 ZNF35P13682 527 aa6.03□□□□□ -1.44
SCN1A-212ENST00000636194 RPL7P18124 248 aaKnown RBP6.03□□□□□ -1.44
SCN1A-212ENST00000636194 CCKBRP32239 447 aa6.03□□□□□ -1.44
SCN1A-212ENST00000636194 ERFP50548 548 aa6.03□□□□□ -1.44
SCN1A-212ENST00000636194 TBX2Q13207 712 aaPredicted RBP6.03□□□□□ -1.44
SCN1A-212ENST00000636194 SP140Q13342 867 aa6.03□□□□□ -1.44
SCN1A-212ENST00000636194 SWT1Q5T5J6 900 aaKnown RBP6.03□□□□□ -1.44
SCN1A-212ENST00000636194 PI16Q6UXB8 463 aa6.03□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms