RNA–Protein interactions for RNA: ENST00000635861.1

CLN3-241, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,404 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-241ENST00000635861 IL10RBQ08334 325 aa18.54■□□□□ 0.56
CLN3-241ENST00000635861 EIF3IQ13347 325 aaKnown RBP18.54■□□□□ 0.56
CLN3-241ENST00000635861 INPP5AQ14642 412 aa18.54■□□□□ 0.56
CLN3-241ENST00000635861 ALG11Q2TAA5 492 aa18.54■□□□□ 0.56
CLN3-241ENST00000635861 ENPP7Q6UWV6 458 aa18.54■□□□□ 0.56
CLN3-241ENST00000635861 CAMK1DQ8IU85 385 aa18.54■□□□□ 0.56
CLN3-241ENST00000635861 HID1Q8IV36 788 aa18.54■□□□□ 0.56
CLN3-241ENST00000635861 AOPEPQ8N6M6 819 aa18.54■□□□□ 0.56
CLN3-241ENST00000635861 NETO2Q8NC67 525 aa18.54■□□□□ 0.56
CLN3-241ENST00000635861 SNRNP27Q8WVK2 155 aaKnown RBP18.54■□□□□ 0.56
CLN3-241ENST00000635861 TRIM11Q96F44 468 aa18.54■□□□□ 0.56
CLN3-241ENST00000635861 LIN37Q96GY3 246 aaPredicted RBP18.54■□□□□ 0.56
CLN3-241ENST00000635861 CELF6Q96J87 481 aaKnown RBP18.54■□□□□ 0.56
CLN3-241ENST00000635861 ZNF599Q96NL3 588 aa18.54■□□□□ 0.56
CLN3-241ENST00000635861 RTN4Q9NQC3 1192 aaKnown RBP18.54■□□□□ 0.56
CLN3-241ENST00000635861 KCTD5Q9NXV2 234 aa18.54■□□□□ 0.56
CLN3-241ENST00000635861 AIPL1Q9NZN9 384 aa18.54■□□□□ 0.56
CLN3-241ENST00000635861 CDRT15L2A8MXV6 281 aa18.53■□□□□ 0.56
CLN3-241ENST00000635861 TNFP01375 233 aa18.53■□□□□ 0.56
CLN3-241ENST00000635861 ERCC2P18074 760 aa18.53■□□□□ 0.56
CLN3-241ENST00000635861 KIAA1024LP59773 190 aa18.53■□□□□ 0.56
CLN3-241ENST00000635861 AP1S1P61966 158 aa18.53■□□□□ 0.56
CLN3-241ENST00000635861 FILIP1LQ4L180 1135 aa18.53■□□□□ 0.56
CLN3-241ENST00000635861 CLEC14AQ86T13 490 aa18.53■□□□□ 0.56
CLN3-241ENST00000635861 ARHGAP12Q8IWW6 846 aa18.53■□□□□ 0.56
CLN3-241ENST00000635861 TSEN2Q8NCE0 465 aaKnown RBP18.53■□□□□ 0.56
CLN3-241ENST00000635861 PCDH19Q8TAB3 1148 aa18.53■□□□□ 0.56
CLN3-241ENST00000635861 PSKH2Q96QS6 385 aa18.53■□□□□ 0.56
CLN3-241ENST00000635861 KCTD15Q96SI1 283 aaPredicted RBP18.53■□□□□ 0.56
CLN3-241ENST00000635861 RBM15Q96T37 977 aaKnown RBP eCLIP18.53■□□□□ 0.56
CLN3-241ENST00000635861 MRPL47Q9HD33 250 aaKnown RBP18.53■□□□□ 0.56
CLN3-241ENST00000635861 GPATCH2LQ9NWQ4 482 aa18.53■□□□□ 0.56
CLN3-241ENST00000635861 ZFC3H1O60293 1989 aaKnown RBP18.53■□□□□ 0.56
CLN3-241ENST00000635861 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP18.52■□□□□ 0.56
CLN3-241ENST00000635861 A0A1W2PQC6 194 aa18.52■□□□□ 0.56
CLN3-241ENST00000635861 LRRC53A6NM62 1247 aa18.52■□□□□ 0.56
CLN3-241ENST00000635861 SMTNL1A8MU46 457 aa18.52■□□□□ 0.56
CLN3-241ENST00000635861 CACNB4O00305 520 aaPredicted RBP18.52■□□□□ 0.56
CLN3-241ENST00000635861 TNFRSF10CO14798 259 aa18.52■□□□□ 0.56
CLN3-241ENST00000635861 MYBL1P10243 752 aa18.52■□□□□ 0.56
CLN3-241ENST00000635861 NFKBIAP25963 317 aa18.52■□□□□ 0.56
CLN3-241ENST00000635861 HSPA9P38646 679 aaKnown RBP18.52■□□□□ 0.56
CLN3-241ENST00000635861 TYRO3Q06418 890 aa18.52■□□□□ 0.56
CLN3-241ENST00000635861 ASIC2Q16515 512 aa18.52■□□□□ 0.56
CLN3-241ENST00000635861 CA9Q16790 459 aa18.52■□□□□ 0.56
CLN3-241ENST00000635861 DPPA4Q7L190 304 aa18.52■□□□□ 0.56
CLN3-241ENST00000635861 ZSWIM9Q86XI8 627 aa18.52■□□□□ 0.56
CLN3-241ENST00000635861 ARFGAP1Q8N6T3 406 aa18.52■□□□□ 0.56
CLN3-241ENST00000635861 TSACCQ96A04 125 aaPredicted RBP18.52■□□□□ 0.56
CLN3-241ENST00000635861 PRR11Q96HE9 360 aaPredicted RBP18.52■□□□□ 0.56
CLN3-241ENST00000635861 ZWILCHQ9H900 591 aa18.52■□□□□ 0.56
CLN3-241ENST00000635861 SEPT3Q9UH03 358 aa18.52■□□□□ 0.56
CLN3-241ENST00000635861 TMCO5BA8MYB1 307 aa18.51■□□□□ 0.55
CLN3-241ENST00000635861 KLK10O43240 276 aa18.51■□□□□ 0.55
CLN3-241ENST00000635861 TEX33O43247 280 aa18.51■□□□□ 0.55
CLN3-241ENST00000635861 ITGA2BP08514 1039 aa18.51■□□□□ 0.55
CLN3-241ENST00000635861 ELFN1P0C7U0 828 aa18.51■□□□□ 0.55
CLN3-241ENST00000635861 PNLIPP16233 465 aa18.51■□□□□ 0.55
CLN3-241ENST00000635861 MIPP30301 263 aa18.51■□□□□ 0.55
CLN3-241ENST00000635861 PCK1P35558 622 aa18.51■□□□□ 0.55
CLN3-241ENST00000635861 RGRP47804 291 aa18.51■□□□□ 0.55
CLN3-241ENST00000635861 RALGDSQ12967 914 aa18.51■□□□□ 0.55
CLN3-241ENST00000635861 PPP6R3Q5H9R7 873 aaPredicted RBP18.51■□□□□ 0.55
CLN3-241ENST00000635861 CRTC1Q6UUV9 634 aa18.51■□□□□ 0.55
CLN3-241ENST00000635861 LIPIQ6XZB0 460 aa18.51■□□□□ 0.55
CLN3-241ENST00000635861 OR56A4Q8NGH8 313 aa18.51■□□□□ 0.55
CLN3-241ENST00000635861 NAF1Q96HR8 494 aaKnown RBP18.51■□□□□ 0.55
CLN3-241ENST00000635861 PEBP4Q96S96 227 aa18.51■□□□□ 0.55
CLN3-241ENST00000635861 HAUS4Q9H6D7 363 aa18.51■□□□□ 0.55
CLN3-241ENST00000635861 GULP1Q9UBP9 304 aa18.51■□□□□ 0.55
CLN3-241ENST00000635861 CNOT8Q9UFF9 292 aaKnown RBP18.51■□□□□ 0.55
CLN3-241ENST00000635861 PCSK1NQ9UHG2 260 aa18.51■□□□□ 0.55
CLN3-241ENST00000635861 GPR34Q9UPC5 381 aa18.51■□□□□ 0.55
CLN3-241ENST00000635861 OR1A2Q9Y585 309 aa18.51■□□□□ 0.55
CLN3-241ENST00000635861 AHCTF1Q8WYP5 2266 aa18.51■□□□□ 0.55
CLN3-241ENST00000635861 A0A1W2PNU3 283 aaPredicted RBP18.5■□□□□ 0.55
CLN3-241ENST00000635861 DFFAO00273 331 aa18.5■□□□□ 0.55
CLN3-241ENST00000635861 PDE2AO00408 941 aaPredicted RBP18.5■□□□□ 0.55
CLN3-241ENST00000635861 TRAFD1O14545 582 aaPredicted RBP18.5■□□□□ 0.55
CLN3-241ENST00000635861 ATMINO43313 823 aaPredicted RBP18.5■□□□□ 0.55
CLN3-241ENST00000635861 SOCS5O75159 536 aa18.5■□□□□ 0.55
CLN3-241ENST00000635861 LRCH4O75427 683 aa18.5■□□□□ 0.55
CLN3-241ENST00000635861 RECQL5O94762 991 aaPredicted RBP18.5■□□□□ 0.55
CLN3-241ENST00000635861 FTLP02792 175 aaPredicted RBP18.5■□□□□ 0.55
CLN3-241ENST00000635861 PCCBP05166 539 aa18.5■□□□□ 0.55
CLN3-241ENST00000635861 CELA2BP08218 269 aaPredicted RBP18.5■□□□□ 0.55
CLN3-241ENST00000635861 TRIM23P36406 574 aa18.5■□□□□ 0.55
CLN3-241ENST00000635861 PDX1P52945 283 aa18.5■□□□□ 0.55
CLN3-241ENST00000635861 DPYSQ14117 519 aa18.5■□□□□ 0.55
CLN3-241ENST00000635861 TSR1Q2NL82 804 aaKnown RBP18.5■□□□□ 0.55
CLN3-241ENST00000635861 CYP4V2Q6ZWL3 525 aaPredicted RBP18.5■□□□□ 0.55
CLN3-241ENST00000635861 PAF1Q8N7H5 531 aa18.5■□□□□ 0.55
CLN3-241ENST00000635861 KYQ8NBH2 561 aa18.5■□□□□ 0.55
CLN3-241ENST00000635861 GPR156Q8NFN8 814 aa18.5■□□□□ 0.55
CLN3-241ENST00000635861 GFM1Q96RP9 751 aaKnown RBP18.5■□□□□ 0.55
CLN3-241ENST00000635861 STRADBQ9C0K7 418 aa18.5■□□□□ 0.55
CLN3-241ENST00000635861 ZNF462Q96JM2 2506 aa18.5■□□□□ 0.55
CLN3-241ENST00000635861 D6RAR5 112 aa18.49■□□□□ 0.55
CLN3-241ENST00000635861 H3BRJ5 948 aa18.49■□□□□ 0.55
CLN3-241ENST00000635861 C1QL1O75973 258 aa18.49■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 87 ms