RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 NFKB1P19838 968 aa18.19■□□□□ 0.5
CLN3-239ENST00000628023 TNNT3P45378 269 aaPredicted RBP18.19■□□□□ 0.5
CLN3-239ENST00000628023 SEL1L3Q68CR1 1132 aa18.19■□□□□ 0.5
CLN3-239ENST00000628023 ITPRIPL1Q6GPH6 555 aa18.19■□□□□ 0.5
CLN3-239ENST00000628023 UNQ6494/PRO21346Q6UXR6 183 aa18.19■□□□□ 0.5
CLN3-239ENST00000628023 ZSCAN30Q86W11 494 aa18.19■□□□□ 0.5
CLN3-239ENST00000628023 KLK6Q92876 244 aa18.19■□□□□ 0.5
CLN3-239ENST00000628023 TRIM44Q96DX7 344 aaPredicted RBP18.19■□□□□ 0.5
CLN3-239ENST00000628023 TDRD1Q9BXT4 1180 aaKnown RBP18.19■□□□□ 0.5
CLN3-239ENST00000628023 FSCN3Q9NQT6 498 aa18.19■□□□□ 0.5
CLN3-239ENST00000628023 DNPEPQ9ULA0 475 aa18.19■□□□□ 0.5
CLN3-239ENST00000628023 PHTF1Q9UMS5 762 aa18.19■□□□□ 0.5
CLN3-239ENST00000628023 USP24Q9UPU5 2620 aa18.19■□□□□ 0.5
CLN3-239ENST00000628023 A0A1B0GTW7 788 aa18.18■□□□□ 0.5
CLN3-239ENST00000628023 CFAP69A5D8W1 941 aa18.18■□□□□ 0.5
CLN3-239ENST00000628023 BCAT2O15382 392 aaPredicted RBP18.18■□□□□ 0.5
CLN3-239ENST00000628023 LATO43561 262 aa18.18■□□□□ 0.5
CLN3-239ENST00000628023 PRLRP16471 622 aa18.18■□□□□ 0.5
CLN3-239ENST00000628023 ITIH2P19823 946 aa18.18■□□□□ 0.5
CLN3-239ENST00000628023 NUDT1P36639 197 aa18.18■□□□□ 0.5
CLN3-239ENST00000628023 SIM1P81133 766 aaPredicted RBP18.18■□□□□ 0.5
CLN3-239ENST00000628023 SKOR1P84550 965 aa18.18■□□□□ 0.5
CLN3-239ENST00000628023 SEMG2Q02383 582 aa18.18■□□□□ 0.5
CLN3-239ENST00000628023 SGCGQ13326 291 aa18.18■□□□□ 0.5
CLN3-239ENST00000628023 SLC14A1Q13336 389 aa18.18■□□□□ 0.5
CLN3-239ENST00000628023 SNX1Q13596 522 aa18.18■□□□□ 0.5
CLN3-239ENST00000628023 PCSK7Q16549 785 aa18.18■□□□□ 0.5
CLN3-239ENST00000628023 USP45Q70EL2 814 aa18.18■□□□□ 0.5
CLN3-239ENST00000628023 PIP4P1Q86T03 277 aa18.18■□□□□ 0.5
CLN3-239ENST00000628023 C17orf53Q8N3J3 647 aaPredicted RBP18.18■□□□□ 0.5
CLN3-239ENST00000628023 C1orf54Q8WWF1 131 aa18.18■□□□□ 0.5
CLN3-239ENST00000628023 IFT43Q96FT9 208 aa18.18■□□□□ 0.5
CLN3-239ENST00000628023 IMP4Q96G21 291 aaKnown RBP18.18■□□□□ 0.5
CLN3-239ENST00000628023 SERAC1Q96JX3 654 aa18.18■□□□□ 0.5
CLN3-239ENST00000628023 OSBPL9Q96SU4 736 aa18.18■□□□□ 0.5
CLN3-239ENST00000628023 ZDHHC5Q9C0B5 715 aa18.18■□□□□ 0.5
CLN3-239ENST00000628023 PCDH9Q9HC56 1237 aa18.18■□□□□ 0.5
CLN3-239ENST00000628023 AASDHPPTQ9NRN7 309 aa18.18■□□□□ 0.5
CLN3-239ENST00000628023 CHKBQ9Y259 395 aa18.18■□□□□ 0.5
CLN3-239ENST00000628023 IGLON5A6NGN9 336 aa18.17■□□□□ 0.5
CLN3-239ENST00000628023 RIOK3O14730 519 aaKnown RBP18.17■□□□□ 0.5
CLN3-239ENST00000628023 SLC31A1O15431 190 aa18.17■□□□□ 0.5
CLN3-239ENST00000628023 SPINT1O43278 529 aa18.17■□□□□ 0.5
CLN3-239ENST00000628023 LIASO43766 372 aa18.17■□□□□ 0.5
CLN3-239ENST00000628023 PMPCBO75439 489 aa18.17■□□□□ 0.5
CLN3-239ENST00000628023 MMP2P08253 660 aa18.17■□□□□ 0.5
CLN3-239ENST00000628023 CYP2A6P11509 494 aaPredicted RBP18.17■□□□□ 0.5
CLN3-239ENST00000628023 CD68P34810 354 aaPredicted RBP18.17■□□□□ 0.5
CLN3-239ENST00000628023 MMP12P39900 470 aa18.17■□□□□ 0.5
CLN3-239ENST00000628023 TEAD4Q15561 434 aa18.17■□□□□ 0.5
CLN3-239ENST00000628023 ZNF284Q2VY69 593 aa18.17■□□□□ 0.5
CLN3-239ENST00000628023 NAPEPLDQ6IQ20 393 aa18.17■□□□□ 0.5
CLN3-239ENST00000628023 ARHGEF18Q6ZSZ5 1173 aa18.17■□□□□ 0.5
CLN3-239ENST00000628023 FAM71DQ8N9W8 422 aa18.17■□□□□ 0.5
CLN3-239ENST00000628023 LPCAT1Q8NF37 534 aa18.17■□□□□ 0.5
CLN3-239ENST00000628023 SPATA22Q8NHS9 363 aa18.17■□□□□ 0.5
CLN3-239ENST00000628023 SLC35B2Q8TB61 432 aa18.17■□□□□ 0.5
CLN3-239ENST00000628023 CCDC110Q8TBZ0 833 aa18.17■□□□□ 0.5
CLN3-239ENST00000628023 SLC6A18Q96N87 628 aa18.17■□□□□ 0.5
CLN3-239ENST00000628023 SPATA13Q96N96 652 aa18.17■□□□□ 0.5
CLN3-239ENST00000628023 NAP1L3Q99457 506 aaPredicted RBP18.17■□□□□ 0.5
CLN3-239ENST00000628023 NAPGQ99747 312 aaPredicted RBP18.17■□□□□ 0.5
CLN3-239ENST00000628023 MYOCQ99972 504 aa18.17■□□□□ 0.5
CLN3-239ENST00000628023 TMEM121Q9BTD3 319 aa18.17■□□□□ 0.5
CLN3-239ENST00000628023 SCNM1Q9BWG6 230 aa18.17■□□□□ 0.5
CLN3-239ENST00000628023 ADGRE3Q9BY15 652 aa18.17■□□□□ 0.5
CLN3-239ENST00000628023 GBA3Q9H227 469 aa18.17■□□□□ 0.5
CLN3-239ENST00000628023 TM9SF3Q9HD45 589 aa18.17■□□□□ 0.5
CLN3-239ENST00000628023 DNAAF2Q9NVR5 837 aaKnown RBP18.17■□□□□ 0.5
CLN3-239ENST00000628023 UBP1Q9NZI7 540 aa18.17■□□□□ 0.5
CLN3-239ENST00000628023 SNX12Q9UMY4 172 aa18.17■□□□□ 0.5
CLN3-239ENST00000628023 ZFR2Q9UPR6 939 aaKnown RBP18.17■□□□□ 0.5
CLN3-239ENST00000628023 ZNF148Q9UQR1 794 aa18.17■□□□□ 0.5
CLN3-239ENST00000628023 DMTF1Q9Y222 760 aa18.17■□□□□ 0.5
CLN3-239ENST00000628023 ADAMTS9Q9P2N4 1935 aa18.17■□□□□ 0.5
CLN3-239ENST00000628023 TMEM8BA6NDV4 472 aa18.16■□□□□ 0.5
CLN3-239ENST00000628023 A8MX80 341 aa18.16■□□□□ 0.5
CLN3-239ENST00000628023 LZTS3O60299 673 aaPredicted RBP18.16■□□□□ 0.5
CLN3-239ENST00000628023 MMP20O60882 483 aa18.16■□□□□ 0.5
CLN3-239ENST00000628023 TM7SF2O76062 418 aa18.16■□□□□ 0.5
CLN3-239ENST00000628023 TRIM16O95361 564 aa18.16■□□□□ 0.5
CLN3-239ENST00000628023 MT-CYBP00156 380 aaPredicted RBP18.16■□□□□ 0.5
CLN3-239ENST00000628023 PDHA1P08559 390 aa18.16■□□□□ 0.5
CLN3-239ENST00000628023 ELFN1P0C7U0 828 aa18.16■□□□□ 0.5
CLN3-239ENST00000628023 CTPS1P17812 591 aa18.16■□□□□ 0.5
CLN3-239ENST00000628023 SPINK2P20155 84 aa18.16■□□□□ 0.5
CLN3-239ENST00000628023 AKT2P31751 481 aa18.16■□□□□ 0.5
CLN3-239ENST00000628023 AFF3P51826 1226 aaKnown RBP18.16■□□□□ 0.5
CLN3-239ENST00000628023 RACK1P63244 317 aaKnown RBP18.16■□□□□ 0.5
CLN3-239ENST00000628023 PRPSAP1Q14558 356 aa18.16■□□□□ 0.5
CLN3-239ENST00000628023 SLC14A2Q15849 920 aa18.16■□□□□ 0.5
CLN3-239ENST00000628023 TMEM52BQ4KMG9 183 aa18.16■□□□□ 0.5
CLN3-239ENST00000628023 TMEM259Q4ZIN3 620 aa18.16■□□□□ 0.5
CLN3-239ENST00000628023 ANKRD20A2Q5SQ80 823 aa18.16■□□□□ 0.5
CLN3-239ENST00000628023 ANKRD20A1Q5TYW2 823 aa18.16■□□□□ 0.5
CLN3-239ENST00000628023 ANKRD20A3Q5VUR7 823 aa18.16■□□□□ 0.5
CLN3-239ENST00000628023 KDELC2Q7Z4H8 507 aa18.16■□□□□ 0.5
CLN3-239ENST00000628023 SPOCK2Q92563 424 aa18.16■□□□□ 0.5
CLN3-239ENST00000628023 MS4A14Q96JA4 679 aa18.16■□□□□ 0.5
CLN3-239ENST00000628023 FCRL5Q96RD9 977 aa18.16■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms