RNA–Protein interactions for RNA: ENST00000622309.4

VPS11-209, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS11, Length 3,352 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-209ENST00000622309 MCOLN2Q8IZK6 566 aa7.96□□□□□ -1.14
VPS11-209ENST00000622309 TP53I13Q8NBR0 393 aaPredicted RBP7.96□□□□□ -1.14
VPS11-209ENST00000622309 LMO3Q8TAP4 145 aa7.96□□□□□ -1.14
VPS11-209ENST00000622309 TRAF3IP1Q8TDR0 691 aaPredicted RBP7.96□□□□□ -1.14
VPS11-209ENST00000622309 TSNARE1Q96NA8 513 aa7.96□□□□□ -1.14
VPS11-209ENST00000622309 OR52B2Q96RD2 323 aa7.96□□□□□ -1.14
VPS11-209ENST00000622309 PIGSQ96S52 555 aa7.96□□□□□ -1.14
VPS11-209ENST00000622309 UHRF1Q96T88 793 aaPredicted RBP7.96□□□□□ -1.14
VPS11-209ENST00000622309 SORT1Q99523 831 aa7.96□□□□□ -1.14
VPS11-209ENST00000622309 TRIM15Q9C019 465 aa7.96□□□□□ -1.14
VPS11-209ENST00000622309 REXO4Q9GZR2 422 aaKnown RBP7.96□□□□□ -1.14
VPS11-209ENST00000622309 GGA1Q9UJY5 639 aa7.96□□□□□ -1.14
VPS11-209ENST00000622309 NOSIPQ9Y314 301 aaKnown RBP7.96□□□□□ -1.14
VPS11-209ENST00000622309 IPPQ9Y573 584 aa7.96□□□□□ -1.14
VPS11-209ENST00000622309 PCM1Q15154 2024 aa7.95□□□□□ -1.14
VPS11-209ENST00000622309 TNRC6CQ9HCJ0 1690 aaKnown RBP7.95□□□□□ -1.14
VPS11-209ENST00000622309 MAGEB16A2A368 324 aa7.95□□□□□ -1.14
VPS11-209ENST00000622309 KRT87PA6NCN2 255 aa7.95□□□□□ -1.14
VPS11-209ENST00000622309 CXorf49A8MYA2 514 aaPredicted RBP7.95□□□□□ -1.14
VPS11-209ENST00000622309 B4GAT1O43505 415 aa7.95□□□□□ -1.14
VPS11-209ENST00000622309 XYLBO75191 536 aa7.95□□□□□ -1.14
VPS11-209ENST00000622309 AMHP03971 560 aa7.95□□□□□ -1.14
VPS11-209ENST00000622309 CD1EP15812 388 aa7.95□□□□□ -1.14
VPS11-209ENST00000622309 STMN1P16949 149 aa7.95□□□□□ -1.14
VPS11-209ENST00000622309 IL10P22301 178 aa7.95□□□□□ -1.14
VPS11-209ENST00000622309 GLDCP23378 1020 aa7.95□□□□□ -1.14
VPS11-209ENST00000622309 GSTM2P28161 218 aa7.95□□□□□ -1.14
VPS11-209ENST00000622309 PBLDP30039 288 aaPredicted RBP7.95□□□□□ -1.14
VPS11-209ENST00000622309 NSFP46459 744 aaKnown RBP7.95□□□□□ -1.14
VPS11-209ENST00000622309 ARPP19P56211 112 aa7.95□□□□□ -1.14
VPS11-209ENST00000622309 SRP54P61011 504 aaKnown RBP7.95□□□□□ -1.14
VPS11-209ENST00000622309 DYNLT1P63172 113 aa7.95□□□□□ -1.14
VPS11-209ENST00000622309 MPP1Q00013 466 aa7.95□□□□□ -1.14
VPS11-209ENST00000622309 RFTN1Q14699 578 aaPredicted RBP7.95□□□□□ -1.14
VPS11-209ENST00000622309 FAM214AQ32MH5 1076 aa7.95□□□□□ -1.14
VPS11-209ENST00000622309 TMEM95Q3KNT9 176 aa7.95□□□□□ -1.14
VPS11-209ENST00000622309 MTERF2Q49AM1 385 aa7.95□□□□□ -1.14
VPS11-209ENST00000622309 TMEM236Q5W0B7 351 aa7.95□□□□□ -1.14
VPS11-209ENST00000622309 STEAP3Q658P3 488 aa7.95□□□□□ -1.14
VPS11-209ENST00000622309 KCTD1Q719H9 257 aa7.95□□□□□ -1.14
VPS11-209ENST00000622309 HID1Q8IV36 788 aa7.95□□□□□ -1.14
VPS11-209ENST00000622309 ADGRF2Q8IZF7 708 aa7.95□□□□□ -1.14
VPS11-209ENST00000622309 CARNMT1Q8N4J0 409 aa7.95□□□□□ -1.14
VPS11-209ENST00000622309 OR10Z1Q8NGY1 313 aa7.95□□□□□ -1.14
VPS11-209ENST00000622309 LHFPL5Q8TAF8 219 aa7.95□□□□□ -1.14
VPS11-209ENST00000622309 CPA5Q8WXQ8 436 aa7.95□□□□□ -1.14
VPS11-209ENST00000622309 SLCO4A1Q96BD0 722 aa7.95□□□□□ -1.14
VPS11-209ENST00000622309 REXO5Q96IC2 774 aaKnown RBP7.95□□□□□ -1.14
VPS11-209ENST00000622309 TSGA13Q96PP4 275 aa7.95□□□□□ -1.14
VPS11-209ENST00000622309 SLITRK1Q96PX8 696 aa7.95□□□□□ -1.14
VPS11-209ENST00000622309 SYNDIG1Q9H7V2 258 aa7.95□□□□□ -1.14
VPS11-209ENST00000622309 LIN7BQ9HAP6 207 aa7.95□□□□□ -1.14
VPS11-209ENST00000622309 ITM2CQ9NQX7 267 aa7.95□□□□□ -1.14
VPS11-209ENST00000622309 IARS2Q9NSE4 1012 aaKnown RBP7.95□□□□□ -1.14
VPS11-209ENST00000622309 SMPD3Q9NY59 655 aaPredicted RBP7.95□□□□□ -1.14
VPS11-209ENST00000622309 TMEM216Q9P0N5 145 aa7.95□□□□□ -1.14
VPS11-209ENST00000622309 POLLQ9UGP5 575 aa7.95□□□□□ -1.14
VPS11-209ENST00000622309 AGTPBP1Q9UPW5 1226 aa7.95□□□□□ -1.14
VPS11-209ENST00000622309 FAM149AA5PLN7 773 aa7.95□□□□□ -1.14
VPS11-209ENST00000622309 ZNF195O14628 629 aa7.95□□□□□ -1.14
VPS11-209ENST00000622309 CPNE3O75131 537 aaKnown RBP7.95□□□□□ -1.14
VPS11-209ENST00000622309 GLRA3O75311 464 aa7.95□□□□□ -1.14
VPS11-209ENST00000622309 SCGB1D2O95969 90 aa7.95□□□□□ -1.14
VPS11-209ENST00000622309 MMP8P22894 467 aa7.95□□□□□ -1.14
VPS11-209ENST00000622309 EIF2DP41214 584 aaKnown RBP7.95□□□□□ -1.14
VPS11-209ENST00000622309 GRIA1P42261 906 aa7.95□□□□□ -1.14
VPS11-209ENST00000622309 ABCG1P45844 678 aa7.95□□□□□ -1.14
VPS11-209ENST00000622309 HCAR3P49019 387 aa7.95□□□□□ -1.14
VPS11-209ENST00000622309 PPM1FP49593 454 aaPredicted RBP7.95□□□□□ -1.14
VPS11-209ENST00000622309 TPD52P55327 224 aaPredicted RBP7.95□□□□□ -1.14
VPS11-209ENST00000622309 TOP3AQ13472 1001 aaPredicted RBP7.95□□□□□ -1.14
VPS11-209ENST00000622309 YIF1BQ5BJH7 314 aa7.95□□□□□ -1.14
VPS11-209ENST00000622309 SYCE2Q6PIF2 218 aa7.95□□□□□ -1.14
VPS11-209ENST00000622309 PLEKHM3Q6ZWE6 761 aa7.95□□□□□ -1.14
VPS11-209ENST00000622309 DHFR2Q86XF0 187 aa7.95□□□□□ -1.14
VPS11-209ENST00000622309 LRRC47Q8N1G4 583 aaKnown RBP7.95□□□□□ -1.14
VPS11-209ENST00000622309 SVOPQ8N4V2 548 aa7.95□□□□□ -1.14
VPS11-209ENST00000622309 ADAM32Q8TC27 787 aa7.95□□□□□ -1.14
VPS11-209ENST00000622309 TMEM47Q9BQJ4 181 aa7.95□□□□□ -1.14
VPS11-209ENST00000622309 WDR55Q9H6Y2 383 aaPredicted RBP7.95□□□□□ -1.14
VPS11-209ENST00000622309 IFT22Q9H7X7 185 aa7.95□□□□□ -1.14
VPS11-209ENST00000622309 PCDHGA7Q9Y5G6 932 aa7.95□□□□□ -1.14
VPS11-209ENST00000622309 RAD54BQ9Y620 910 aa7.95□□□□□ -1.14
VPS11-209ENST00000622309 A0A1B0GUL6 1792 aa7.95□□□□□ -1.14
VPS11-209ENST00000622309 UBE4BO95155 1302 aa7.95□□□□□ -1.14
VPS11-209ENST00000622309 A0A0G2JMP0 313 aa7.94□□□□□ -1.14
VPS11-209ENST00000622309 A0A0X1KG70 313 aa7.94□□□□□ -1.14
VPS11-209ENST00000622309 PRR23AA6NEV1 266 aa7.94□□□□□ -1.14
VPS11-209ENST00000622309 GPR25O00155 361 aa7.94□□□□□ -1.14
VPS11-209ENST00000622309 NRP1O14786 923 aa7.94□□□□□ -1.14
VPS11-209ENST00000622309 EIF3DO15371 548 aaKnown RBP eCLIP7.94□□□□□ -1.14
VPS11-209ENST00000622309 ALBP02768 609 aa7.94□□□□□ -1.14
VPS11-209ENST00000622309 PSKH1P11801 424 aa7.94□□□□□ -1.14
VPS11-209ENST00000622309 GAP43P17677 238 aa7.94□□□□□ -1.14
VPS11-209ENST00000622309 ALOX12P18054 663 aa7.94□□□□□ -1.14
VPS11-209ENST00000622309 FASP25445 335 aa7.94□□□□□ -1.14
VPS11-209ENST00000622309 HTR1BP28222 390 aa7.94□□□□□ -1.14
VPS11-209ENST00000622309 ELK4P28324 431 aa7.94□□□□□ -1.14
VPS11-209ENST00000622309 ALDH4A1P30038 563 aa7.94□□□□□ -1.14
VPS11-209ENST00000622309 HSD17B2P37059 387 aa7.94□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms