RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 FBXL19Q6PCT2 694 aa14.06□□□□□ -0.16
CPSF1-212ENST00000616140 DCLRE1AQ6PJP8 1040 aa14.06□□□□□ -0.16
CPSF1-212ENST00000616140 ZNF572Q7Z3I7 529 aaPredicted RBP14.06□□□□□ -0.16
CPSF1-212ENST00000616140 PIGWQ7Z7B1 504 aa14.06□□□□□ -0.16
CPSF1-212ENST00000616140 CDK20Q8IZL9 346 aa14.06□□□□□ -0.16
CPSF1-212ENST00000616140 CFAP52Q8N1V2 620 aa14.06□□□□□ -0.16
CPSF1-212ENST00000616140 SPATA22Q8NHS9 363 aa14.06□□□□□ -0.16
CPSF1-212ENST00000616140 PCDH19Q8TAB3 1148 aa14.06□□□□□ -0.16
CPSF1-212ENST00000616140 WDR48Q8TAF3 677 aa14.06□□□□□ -0.16
CPSF1-212ENST00000616140 GATA5Q9BWX5 397 aaPredicted RBP14.06□□□□□ -0.16
CPSF1-212ENST00000616140 EPB41L4BQ9H329 900 aa14.06□□□□□ -0.16
CPSF1-212ENST00000616140 PDZD7Q9H5P4 517 aa14.06□□□□□ -0.16
CPSF1-212ENST00000616140 ZNF180Q9UJW8 692 aa14.06□□□□□ -0.16
CPSF1-212ENST00000616140 GIT1Q9Y2X7 761 aa14.06□□□□□ -0.16
CPSF1-212ENST00000616140 DERAQ9Y315 318 aa14.06□□□□□ -0.16
CPSF1-212ENST00000616140 GMPPBQ9Y5P6 360 aa14.06□□□□□ -0.16
CPSF1-212ENST00000616140 CST1P01037 141 aa14.05□□□□□ -0.16
CPSF1-212ENST00000616140 SP100P23497 879 aaPredicted RBP14.05□□□□□ -0.16
CPSF1-212ENST00000616140 FEN1P39748 380 aaKnown RBP14.05□□□□□ -0.16
CPSF1-212ENST00000616140 SNRPD1P62314 119 aaKnown RBP14.05□□□□□ -0.16
CPSF1-212ENST00000616140 TUSC3Q13454 348 aa14.05□□□□□ -0.16
CPSF1-212ENST00000616140 SLC35G1Q2M3R5 365 aa14.05□□□□□ -0.16
CPSF1-212ENST00000616140 MTX3Q5HYI7 312 aa14.05□□□□□ -0.16
CPSF1-212ENST00000616140 GPR107Q5VW38 600 aa14.05□□□□□ -0.16
CPSF1-212ENST00000616140 DSELQ8IZU8 1212 aa14.05□□□□□ -0.16
CPSF1-212ENST00000616140 ERLEC1Q96DZ1 483 aa14.05□□□□□ -0.16
CPSF1-212ENST00000616140 AGO3Q9H9G7 860 aaKnown RBP14.05□□□□□ -0.16
CPSF1-212ENST00000616140 TAS2R1Q9NYW7 299 aa14.05□□□□□ -0.16
CPSF1-212ENST00000616140 SPG21Q9NZD8 308 aa14.05□□□□□ -0.16
CPSF1-212ENST00000616140 CDH22Q9UJ99 828 aa14.05□□□□□ -0.16
CPSF1-212ENST00000616140 STXBP5LQ9Y2K9 1186 aa14.05□□□□□ -0.16
CPSF1-212ENST00000616140 TK2O00142 265 aa14.05□□□□□ -0.16
CPSF1-212ENST00000616140 MYL12BO14950 172 aa14.05□□□□□ -0.16
CPSF1-212ENST00000616140 LRIG2O94898 1065 aa14.05□□□□□ -0.16
CPSF1-212ENST00000616140 AP2A1O95782 977 aa14.05□□□□□ -0.16
CPSF1-212ENST00000616140 LIMK2P53671 638 aa14.05□□□□□ -0.16
CPSF1-212ENST00000616140 CYP2A13Q16696 494 aa14.05□□□□□ -0.16
CPSF1-212ENST00000616140 USP39Q53GS9 565 aaKnown RBP14.05□□□□□ -0.16
CPSF1-212ENST00000616140 DRICH1Q6PGQ1 229 aaPredicted RBP14.05□□□□□ -0.16
CPSF1-212ENST00000616140 ANKS1BQ7Z6G8 1248 aa14.05□□□□□ -0.16
CPSF1-212ENST00000616140 LDB1Q86U70 411 aaPredicted RBP14.05□□□□□ -0.16
CPSF1-212ENST00000616140 OFCC1Q8IZS5 231 aa14.05□□□□□ -0.16
CPSF1-212ENST00000616140 CCDC185Q8N715 623 aa14.05□□□□□ -0.16
CPSF1-212ENST00000616140 PIK3R5Q8WYR1 880 aa14.05□□□□□ -0.16
CPSF1-212ENST00000616140 QKIQ96PU8 341 aaKnown RBP eCLIP14.05□□□□□ -0.16
CPSF1-212ENST00000616140 NOL11Q9H8H0 719 aaKnown RBP14.05□□□□□ -0.16
CPSF1-212ENST00000616140 HMX1Q9NP08 348 aaPredicted RBP14.05□□□□□ -0.16
CPSF1-212ENST00000616140 VPS51Q9UID3 782 aa14.05□□□□□ -0.16
CPSF1-212ENST00000616140 PLIN4Q96Q06 1357 aa14.05□□□□□ -0.16
CPSF1-212ENST00000616140 NT5C1B-RDH14C9J2C7 533 aa14.05□□□□□ -0.16
CPSF1-212ENST00000616140 PTPN9P43378 593 aa14.05□□□□□ -0.16
CPSF1-212ENST00000616140 RAB14P61106 215 aa14.05□□□□□ -0.16
CPSF1-212ENST00000616140 TSNQ15631 228 aaKnown RBP14.05□□□□□ -0.16
CPSF1-212ENST00000616140 PAGE2BQ5JRK9 111 aa14.05□□□□□ -0.16
CPSF1-212ENST00000616140 ZNF549Q6P9A3 640 aa14.05□□□□□ -0.16
CPSF1-212ENST00000616140 ZNF567Q8N184 647 aa14.05□□□□□ -0.16
CPSF1-212ENST00000616140 ATAD1Q8NBU5 361 aa14.05□□□□□ -0.16
CPSF1-212ENST00000616140 UROC1Q96N76 676 aa14.05□□□□□ -0.16
CPSF1-212ENST00000616140 CCDC3Q9BQI4 270 aa14.05□□□□□ -0.16
CPSF1-212ENST00000616140 ATP13A3Q9H7F0 1226 aa14.05□□□□□ -0.16
CPSF1-212ENST00000616140 PCDH12Q9NPG4 1184 aa14.05□□□□□ -0.16
CPSF1-212ENST00000616140 EFCAB10A6NFE3 127 aa14.05□□□□□ -0.16
CPSF1-212ENST00000616140 C5orf60A6NFR6 353 aa14.05□□□□□ -0.16
CPSF1-212ENST00000616140 ANKDD1BA6NHY2 528 aa14.05□□□□□ -0.16
CPSF1-212ENST00000616140 SLC22A3O75751 556 aa14.05□□□□□ -0.16
CPSF1-212ENST00000616140 CSH1P0DML2 217 aa14.05□□□□□ -0.16
CPSF1-212ENST00000616140 CSH2P0DML3 217 aa14.05□□□□□ -0.16
CPSF1-212ENST00000616140 NRG1Q02297 640 aaPredicted RBP14.05□□□□□ -0.16
CPSF1-212ENST00000616140 POM121L1PQ3SYA9 428 aa14.05□□□□□ -0.16
CPSF1-212ENST00000616140 RNF220Q5VTB9 566 aa14.05□□□□□ -0.16
CPSF1-212ENST00000616140 TRIQKQ629K1 86 aa14.05□□□□□ -0.16
CPSF1-212ENST00000616140 RHBDF2Q6PJF5 856 aa14.05□□□□□ -0.16
CPSF1-212ENST00000616140 DCBLD1Q8N8Z6 715 aa14.05□□□□□ -0.16
CPSF1-212ENST00000616140 OR6K2Q8NGY2 324 aa14.05□□□□□ -0.16
CPSF1-212ENST00000616140 PANX1Q96RD7 426 aa14.05□□□□□ -0.16
CPSF1-212ENST00000616140 RAD18Q9NS91 495 aa14.05□□□□□ -0.16
CPSF1-212ENST00000616140 MCM8Q9UJA3 840 aa14.05□□□□□ -0.16
CPSF1-212ENST00000616140 PRRC2BQ5JSZ5 2229 aaKnown RBP14.04□□□□□ -0.16
CPSF1-212ENST00000616140 A0A1B0GW55 424 aa14.04□□□□□ -0.16
CPSF1-212ENST00000616140 MAGEC1O60732 1142 aa14.04□□□□□ -0.16
CPSF1-212ENST00000616140 TBL1XO60907 577 aa14.04□□□□□ -0.16
CPSF1-212ENST00000616140 OR4Q2P0C623 313 aa14.04□□□□□ -0.16
CPSF1-212ENST00000616140 DUX4L2P0CJ85 424 aa14.04□□□□□ -0.16
CPSF1-212ENST00000616140 DUX4L3P0CJ86 424 aa14.04□□□□□ -0.16
CPSF1-212ENST00000616140 DUX4L4P0CJ87 422 aa14.04□□□□□ -0.16
CPSF1-212ENST00000616140 DUX4L5P0CJ88 424 aa14.04□□□□□ -0.16
CPSF1-212ENST00000616140 DUX4L6P0CJ89 424 aa14.04□□□□□ -0.16
CPSF1-212ENST00000616140 DUX4L7P0CJ90 424 aa14.04□□□□□ -0.16
CPSF1-212ENST00000616140 COL6A2P12110 1019 aa14.04□□□□□ -0.16
CPSF1-212ENST00000616140 MC4RP32245 332 aa14.04□□□□□ -0.16
CPSF1-212ENST00000616140 MAPK8P45983 427 aa14.04□□□□□ -0.16
CPSF1-212ENST00000616140 RXRGP48443 463 aa14.04□□□□□ -0.16
CPSF1-212ENST00000616140 TIMM50Q3ZCQ8 353 aa14.04□□□□□ -0.16
CPSF1-212ENST00000616140 PERM1Q5SV97 790 aa14.04□□□□□ -0.16
CPSF1-212ENST00000616140 FSTL4Q6MZW2 842 aa14.04□□□□□ -0.16
CPSF1-212ENST00000616140 VSTM1Q6UX27 236 aa14.04□□□□□ -0.16
CPSF1-212ENST00000616140 AADATQ8N5Z0 425 aa14.04□□□□□ -0.16
CPSF1-212ENST00000616140 GPR156Q8NFN8 814 aa14.04□□□□□ -0.16
CPSF1-212ENST00000616140 DQX1Q8TE96 717 aaKnown RBP14.04□□□□□ -0.16
CPSF1-212ENST00000616140 PPM1MQ96MI6 270 aa14.04□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms