RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 SIRPGQ9P1W8 387 aa6.34□□□□□ -1.39
CUX1-220ENST00000607092 LRIT1Q9P2V4 623 aa6.34□□□□□ -1.39
CUX1-220ENST00000607092 DACH1Q9UI36 760 aa6.34□□□□□ -1.39
CUX1-220ENST00000607092 TMEM59LQ9UK28 342 aa6.34□□□□□ -1.39
CUX1-220ENST00000607092 DOPEY1Q5JWR5 2465 aa6.34□□□□□ -1.4
CUX1-220ENST00000607092 DOCK9Q9BZ29 2069 aa6.34□□□□□ -1.4
CUX1-220ENST00000607092 COL12A1Q99715 3063 aa6.33□□□□□ -1.4
CUX1-220ENST00000607092 PRAMEF33A0A0G2JMD5 474 aa6.33□□□□□ -1.4
CUX1-220ENST00000607092 A0A1W2PQM1 296 aa6.33□□□□□ -1.4
CUX1-220ENST00000607092 RHPN2P1A8MT19 583 aa6.33□□□□□ -1.4
CUX1-220ENST00000607092 GOLGA8SH3BPF8 625 aa6.33□□□□□ -1.4
CUX1-220ENST00000607092 PRAMEF10O60809 474 aa6.33□□□□□ -1.4
CUX1-220ENST00000607092 LRIG2O94898 1065 aa6.33□□□□□ -1.4
CUX1-220ENST00000607092 TPM2P07951 284 aa6.33□□□□□ -1.4
CUX1-220ENST00000607092 PLEKP08567 350 aaPredicted RBP6.33□□□□□ -1.4
CUX1-220ENST00000607092 ELFN1P0C7U0 828 aa6.33□□□□□ -1.4
CUX1-220ENST00000607092 FAM87AP0C7U9 286 aa6.33□□□□□ -1.4
CUX1-220ENST00000607092 GP1BBP13224 206 aa6.33□□□□□ -1.4
CUX1-220ENST00000607092 ITGB6P18564 788 aa6.33□□□□□ -1.4
CUX1-220ENST00000607092 ERCC5P28715 1186 aaPredicted RBP6.33□□□□□ -1.4
CUX1-220ENST00000607092 EPHB2P29323 1055 aa6.33□□□□□ -1.4
CUX1-220ENST00000607092 ACVRL1P37023 503 aa6.33□□□□□ -1.4
CUX1-220ENST00000607092 MMP12P39900 470 aa6.33□□□□□ -1.4
CUX1-220ENST00000607092 CSNK1DP48730 415 aa6.33□□□□□ -1.4
CUX1-220ENST00000607092 LIG3P49916 1009 aa6.33□□□□□ -1.4
CUX1-220ENST00000607092 RENBPP51606 427 aa6.33□□□□□ -1.4
CUX1-220ENST00000607092 ZNF135P52742 658 aaPredicted RBP6.33□□□□□ -1.4
CUX1-220ENST00000607092 COPB1P53618 953 aaKnown RBP6.33□□□□□ -1.4
CUX1-220ENST00000607092 GPLD1P80108 840 aa6.33□□□□□ -1.4
CUX1-220ENST00000607092 TLE1Q04724 770 aa6.33□□□□□ -1.4
CUX1-220ENST00000607092 SRSF1Q07955 248 aaKnown RBP eCLIP6.33□□□□□ -1.4
CUX1-220ENST00000607092 UBAP2LQ14157 1087 aaKnown RBP6.33□□□□□ -1.4
CUX1-220ENST00000607092 INPP5AQ14642 412 aa6.33□□□□□ -1.4
CUX1-220ENST00000607092 RFTN1Q14699 578 aaPredicted RBP6.33□□□□□ -1.4
CUX1-220ENST00000607092 DRAP1Q14919 205 aaPredicted RBP6.33□□□□□ -1.4
CUX1-220ENST00000607092 SYCP1Q15431 976 aa6.33□□□□□ -1.4
CUX1-220ENST00000607092 WSCD2Q2TBF2 565 aa6.33□□□□□ -1.4
CUX1-220ENST00000607092 LINC00303Q3SY05 128 aa6.33□□□□□ -1.4
CUX1-220ENST00000607092 TPRG1LQ5T0D9 272 aa6.33□□□□□ -1.4
CUX1-220ENST00000607092 MANEALQ5VSG8 457 aa6.33□□□□□ -1.4
CUX1-220ENST00000607092 ISM2Q6H9L7 571 aa6.33□□□□□ -1.4
CUX1-220ENST00000607092 GJB7Q6PEY0 223 aa6.33□□□□□ -1.4
CUX1-220ENST00000607092 SPRED1Q7Z699 444 aa6.33□□□□□ -1.4
CUX1-220ENST00000607092 SLFN11Q7Z7L1 901 aa6.33□□□□□ -1.4
CUX1-220ENST00000607092 B3GNT8Q7Z7M8 397 aa6.33□□□□□ -1.4
CUX1-220ENST00000607092 NLRP14Q86W24 1093 aa6.33□□□□□ -1.4
CUX1-220ENST00000607092 ATCAYQ86WG3 371 aa6.33□□□□□ -1.4
CUX1-220ENST00000607092 SLITRK4Q8IW52 837 aa6.33□□□□□ -1.4
CUX1-220ENST00000607092 UMODL1-AS1Q8N2C9 162 aa6.33□□□□□ -1.4
CUX1-220ENST00000607092 IL22RA1Q8N6P7 574 aa6.33□□□□□ -1.4
CUX1-220ENST00000607092 RTL3Q8N8U3 475 aaKnown RBP6.33□□□□□ -1.4
CUX1-220ENST00000607092 AVL9Q8NBF6 648 aa6.33□□□□□ -1.4
CUX1-220ENST00000607092 OR6K2Q8NGY2 324 aa6.33□□□□□ -1.4
CUX1-220ENST00000607092 USP7Q93009 1102 aa6.33□□□□□ -1.4
CUX1-220ENST00000607092 TSACCQ96A04 125 aaPredicted RBP6.33□□□□□ -1.4
CUX1-220ENST00000607092 CFAP57Q96MR6 1250 aa6.33□□□□□ -1.4
CUX1-220ENST00000607092 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP6.33□□□□□ -1.44e-6■■■■□ 23.2
CUX1-220ENST00000607092 WRAP53Q9BUR4 548 aaKnown RBP6.33□□□□□ -1.4
CUX1-220ENST00000607092 DDA1Q9BW61 102 aa6.33□□□□□ -1.4
CUX1-220ENST00000607092 GSDMCQ9BYG8 508 aa6.33□□□□□ -1.4
CUX1-220ENST00000607092 STK33Q9BYT3 514 aa6.33□□□□□ -1.4
CUX1-220ENST00000607092 FOXP3Q9BZS1 431 aa6.33□□□□□ -1.4
CUX1-220ENST00000607092 TCEAL2Q9H3H9 227 aaPredicted RBP6.33□□□□□ -1.4
CUX1-220ENST00000607092 NDST4Q9H3R1 872 aa6.33□□□□□ -1.4
CUX1-220ENST00000607092 STN1Q9H668 368 aaKnown RBP6.33□□□□□ -1.4
CUX1-220ENST00000607092 WDR26Q9H7D7 661 aa6.33□□□□□ -1.4
CUX1-220ENST00000607092 MBNL1Q9NR56 388 aaKnown RBP6.33□□□□□ -1.4
CUX1-220ENST00000607092 PHPT1Q9NRX4 125 aaPredicted RBP6.33□□□□□ -1.4
CUX1-220ENST00000607092 TRNAU1APQ9NX07 287 aaKnown RBP6.33□□□□□ -1.4
CUX1-220ENST00000607092 ANKMY1Q9P2S6 941 aa6.33□□□□□ -1.4
CUX1-220ENST00000607092 DNAI1Q9UI46 699 aa6.33□□□□□ -1.4
CUX1-220ENST00000607092 ITM2BQ9Y287 266 aa6.33□□□□□ -1.4
CUX1-220ENST00000607092 ATP8A1Q9Y2Q0 1164 aa6.33□□□□□ -1.4
CUX1-220ENST00000607092 RNF215Q9Y6U7 377 aa6.33□□□□□ -1.4
CUX1-220ENST00000607092 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP6.32□□□□□ -1.4
CUX1-220ENST00000607092 ARHGAP42A6NI28 874 aa6.32□□□□□ -1.4
CUX1-220ENST00000607092 WASH4PA8MWX3 477 aa6.32□□□□□ -1.4
CUX1-220ENST00000607092 B4E171 279 aa6.32□□□□□ -1.4
CUX1-220ENST00000607092 I6L893 689 aaPredicted RBP6.32□□□□□ -1.4
CUX1-220ENST00000607092 BIN1O00499 593 aa6.32□□□□□ -1.4
CUX1-220ENST00000607092 CD160O95971 181 aa6.32□□□□□ -1.4
CUX1-220ENST00000607092 CALB1P05937 261 aa6.32□□□□□ -1.4
CUX1-220ENST00000607092 PYGLP06737 847 aa6.32□□□□□ -1.4
CUX1-220ENST00000607092 KRT3P12035 628 aa6.32□□□□□ -1.4
CUX1-220ENST00000607092 HGFP14210 728 aa6.32□□□□□ -1.4
CUX1-220ENST00000607092 BMP6P22004 513 aa6.32□□□□□ -1.4
CUX1-220ENST00000607092 MMP8P22894 467 aa6.32□□□□□ -1.4
CUX1-220ENST00000607092 EEF1GP26641 437 aaKnown RBP6.32□□□□□ -1.4
CUX1-220ENST00000607092 MAP4P27816 1152 aaKnown RBP6.32□□□□□ -1.4
CUX1-220ENST00000607092 TEAD1P28347 426 aa6.32□□□□□ -1.4
CUX1-220ENST00000607092 TRIM23P36406 574 aa6.32□□□□□ -1.4
CUX1-220ENST00000607092 HSPA9P38646 679 aaKnown RBP6.32□□□□□ -1.4
CUX1-220ENST00000607092 CASRP41180 1078 aa6.32□□□□□ -1.4
CUX1-220ENST00000607092 TSPAN7P41732 249 aa6.32□□□□□ -1.4
CUX1-220ENST00000607092 NSFP46459 744 aaKnown RBP6.32□□□□□ -1.4
CUX1-220ENST00000607092 NDST2P52849 883 aa6.32□□□□□ -1.4
CUX1-220ENST00000607092 NOMO3P69849 1222 aa6.32□□□□□ -1.4
CUX1-220ENST00000607092 ATP11AP98196 1134 aa6.32□□□□□ -1.4
CUX1-220ENST00000607092 BCL2L1Q07817 233 aa6.32□□□□□ -1.4
CUX1-220ENST00000607092 NSUN2Q08J23 767 aaKnown RBP eCLIP6.32□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 54.6 ms