RNA–Protein interactions for RNA: ENST00000599833.1

SHKBP1-221, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 761 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-221ENST00000599833 IGFALSP35858 605 aa19.6■□□□□ 0.73
SHKBP1-221ENST00000599833 LIG3P49916 1009 aa19.6■□□□□ 0.73
SHKBP1-221ENST00000599833 NXPH1P58417 271 aa19.6■□□□□ 0.73
SHKBP1-221ENST00000599833 ITKQ08881 620 aa19.6■□□□□ 0.73
SHKBP1-221ENST00000599833 SIX1Q15475 284 aaPredicted RBP19.6■□□□□ 0.73
SHKBP1-221ENST00000599833 SLC14A2Q15849 920 aa19.6■□□□□ 0.73
SHKBP1-221ENST00000599833 ZNF423Q2M1K9 1284 aa19.6■□□□□ 0.73
SHKBP1-221ENST00000599833 TPRG1LQ5T0D9 272 aa19.6■□□□□ 0.73
SHKBP1-221ENST00000599833 ARMC12Q5T9G4 340 aa19.6■□□□□ 0.73
SHKBP1-221ENST00000599833 LIPIQ6XZB0 460 aa19.6■□□□□ 0.73
SHKBP1-221ENST00000599833 IQCHQ86VS3 1027 aa19.6■□□□□ 0.73
SHKBP1-221ENST00000599833 SLC22A18ASQ8N1D0 253 aa19.6■□□□□ 0.73
SHKBP1-221ENST00000599833 TRIM58Q8NG06 486 aa19.6■□□□□ 0.73
SHKBP1-221ENST00000599833 SLC35B2Q8TB61 432 aa19.6■□□□□ 0.73
SHKBP1-221ENST00000599833 SCRN2Q96FV2 425 aa19.6■□□□□ 0.73
SHKBP1-221ENST00000599833 RBM15Q96T37 977 aaKnown RBP eCLIP19.6■□□□□ 0.73
SHKBP1-221ENST00000599833 MYOCQ99972 504 aa19.6■□□□□ 0.73
SHKBP1-221ENST00000599833 ZDHHC5Q9C0B5 715 aa19.6■□□□□ 0.73
SHKBP1-221ENST00000599833 CARD9Q9H257 536 aa19.6■□□□□ 0.73
SHKBP1-221ENST00000599833 CAAP1Q9H8G2 361 aa19.6■□□□□ 0.73
SHKBP1-221ENST00000599833 TMEM9BQ9NQ34 198 aa19.6■□□□□ 0.73
SHKBP1-221ENST00000599833 MBNL1Q9NR56 388 aaKnown RBP19.6■□□□□ 0.73
SHKBP1-221ENST00000599833 SEPT10Q9P0V9 454 aa19.6■□□□□ 0.73
SHKBP1-221ENST00000599833 PHTF1Q9UMS5 762 aa19.6■□□□□ 0.73
SHKBP1-221ENST00000599833 FNDC3AQ9Y2H6 1198 aaKnown RBP19.6■□□□□ 0.73
SHKBP1-221ENST00000599833 COQ6Q9Y2Z9 468 aa19.6■□□□□ 0.73
SHKBP1-221ENST00000599833 TTLL3Q9Y4R7 772 aa19.6■□□□□ 0.73
SHKBP1-221ENST00000599833 SCN8AQ9UQD0 1980 aa19.59■□□□□ 0.73
SHKBP1-221ENST00000599833 ARID1BQ8NFD5 2236 aaPredicted RBP19.59■□□□□ 0.73
SHKBP1-221ENST00000599833 LRP4O75096 1905 aa19.59■□□□□ 0.73
SHKBP1-221ENST00000599833 A0A0U1RQS6 177 aa19.59■□□□□ 0.73
SHKBP1-221ENST00000599833 ALPIP09923 528 aa19.59■□□□□ 0.73
SHKBP1-221ENST00000599833 RBP3P10745 1247 aa19.59■□□□□ 0.73
SHKBP1-221ENST00000599833 CNGA3Q16281 694 aa19.59■□□□□ 0.73
SHKBP1-221ENST00000599833 CDKN3Q16667 212 aa19.59■□□□□ 0.73
SHKBP1-221ENST00000599833 KDELC1Q6UW63 502 aa19.59■□□□□ 0.73
SHKBP1-221ENST00000599833 DENND6BQ8NEG7 585 aa19.59■□□□□ 0.73
SHKBP1-221ENST00000599833 SPATA22Q8NHS9 363 aa19.59■□□□□ 0.73
SHKBP1-221ENST00000599833 PDCD6IPQ8WUM4 868 aaKnown RBP19.59■□□□□ 0.73
SHKBP1-221ENST00000599833 OXNAD1Q96HP4 312 aaPredicted RBP19.59■□□□□ 0.73
SHKBP1-221ENST00000599833 CHKBQ9Y259 395 aa19.59■□□□□ 0.73
SHKBP1-221ENST00000599833 HS3ST3A1Q9Y663 406 aa19.59■□□□□ 0.73
SHKBP1-221ENST00000599833 A0A0J9YYE9 177 aa19.58■□□□□ 0.72
SHKBP1-221ENST00000599833 TLR4O00206 839 aa19.58■□□□□ 0.72
SHKBP1-221ENST00000599833 KCNK3O14649 394 aa19.58■□□□□ 0.72
SHKBP1-221ENST00000599833 TM7SF2O76062 418 aa19.58■□□□□ 0.72
SHKBP1-221ENST00000599833 MT-CYBP00156 380 aaPredicted RBP19.58■□□□□ 0.72
SHKBP1-221ENST00000599833 TRBC1P01850 177 aa19.58■□□□□ 0.72
SHKBP1-221ENST00000599833 SYPP08247 313 aa19.58■□□□□ 0.72
SHKBP1-221ENST00000599833 NFKB1P19838 968 aa19.58■□□□□ 0.72
SHKBP1-221ENST00000599833 EIF3EP60228 445 aaKnown RBP19.58■□□□□ 0.72
SHKBP1-221ENST00000599833 PFN3P60673 137 aa19.58■□□□□ 0.72
SHKBP1-221ENST00000599833 POLR2LP62875 67 aaKnown RBP19.58■□□□□ 0.72
SHKBP1-221ENST00000599833 RPS6KA1Q15418 735 aa19.58■□□□□ 0.72
SHKBP1-221ENST00000599833 TEAD4Q15561 434 aa19.58■□□□□ 0.72
SHKBP1-221ENST00000599833 WSCD2Q2TBF2 565 aa19.58■□□□□ 0.72
SHKBP1-221ENST00000599833 HLA-BQ31612 363 aa19.58■□□□□ 0.72
SHKBP1-221ENST00000599833 ERAP2Q6P179 960 aa19.58■□□□□ 0.72
SHKBP1-221ENST00000599833 KYAT3Q6YP21 454 aaKnown RBP19.58■□□□□ 0.72
SHKBP1-221ENST00000599833 DBX2Q6ZNG2 339 aa19.58■□□□□ 0.72
SHKBP1-221ENST00000599833 TSPAN33Q86UF1 283 aa19.58■□□□□ 0.72
SHKBP1-221ENST00000599833 SLC13A5Q86YT5 568 aaPredicted RBP19.58■□□□□ 0.72
SHKBP1-221ENST00000599833 KLHDC8BQ8IXV7 354 aa19.58■□□□□ 0.72
SHKBP1-221ENST00000599833 PELI3Q8N2H9 469 aa19.58■□□□□ 0.72
SHKBP1-221ENST00000599833 OR13H1Q8NG92 308 aa19.58■□□□□ 0.72
SHKBP1-221ENST00000599833 CXorf40AQ8TE69 158 aa19.58■□□□□ 0.72
SHKBP1-221ENST00000599833 COQ10AQ96MF6 247 aa19.58■□□□□ 0.72
SHKBP1-221ENST00000599833 ALS2CR12Q96Q35 445 aa19.58■□□□□ 0.72
SHKBP1-221ENST00000599833 LYSMD1Q96S90 227 aa19.58■□□□□ 0.72
SHKBP1-221ENST00000599833 GTPBP2Q9BX10 602 aaKnown RBP19.58■□□□□ 0.72
SHKBP1-221ENST00000599833 PCDH9Q9HC56 1237 aa19.58■□□□□ 0.72
SHKBP1-221ENST00000599833 AASDHPPTQ9NRN7 309 aa19.58■□□□□ 0.72
SHKBP1-221ENST00000599833 PCNX2A6NKB5 2137 aa19.58■□□□□ 0.72
SHKBP1-221ENST00000599833 H7C0C1 242 aa19.57■□□□□ 0.72
SHKBP1-221ENST00000599833 NEMP1O14524 444 aa19.57■□□□□ 0.72
SHKBP1-221ENST00000599833 MTSS1O43312 755 aa19.57■□□□□ 0.72
SHKBP1-221ENST00000599833 HEXIM1O94992 359 aaKnown RBP19.57■□□□□ 0.72
SHKBP1-221ENST00000599833 CD59P13987 128 aa19.57■□□□□ 0.72
SHKBP1-221ENST00000599833 CTPS1P17812 591 aa19.57■□□□□ 0.72
SHKBP1-221ENST00000599833 XPAP23025 273 aaPredicted RBP19.57■□□□□ 0.72
SHKBP1-221ENST00000599833 AKT2P31751 481 aa19.57■□□□□ 0.72
SHKBP1-221ENST00000599833 VIPR1P32241 457 aa19.57■□□□□ 0.72
SHKBP1-221ENST00000599833 HNF1BP35680 557 aa19.57■□□□□ 0.72
SHKBP1-221ENST00000599833 ATP5OP48047 213 aa19.57■□□□□ 0.72
SHKBP1-221ENST00000599833 FAM193AP78312 1265 aa19.57■□□□□ 0.72
SHKBP1-221ENST00000599833 QPCTQ16769 361 aa19.57■□□□□ 0.72
SHKBP1-221ENST00000599833 CFAP58Q5T655 872 aa19.57■□□□□ 0.72
SHKBP1-221ENST00000599833 FUBP1Q96AE4 644 aaKnown RBP19.57■□□□□ 0.72
SHKBP1-221ENST00000599833 FCRL5Q96RD9 977 aa19.57■□□□□ 0.72
SHKBP1-221ENST00000599833 VAT1Q99536 393 aa19.57■□□□□ 0.72
SHKBP1-221ENST00000599833 GAREM1Q9H706 876 aa19.57■□□□□ 0.72
SHKBP1-221ENST00000599833 PNMA8BQ9ULN7 279 aaPredicted RBP19.57■□□□□ 0.72
SHKBP1-221ENST00000599833 CAPN8A6NHC0 703 aa19.56■□□□□ 0.72
SHKBP1-221ENST00000599833 A8MX80 341 aa19.56■□□□□ 0.72
SHKBP1-221ENST00000599833 PTMAP06454 111 aaKnown RBP19.56■□□□□ 0.72
SHKBP1-221ENST00000599833 ZNF883P0CG24 379 aa19.56■□□□□ 0.72
SHKBP1-221ENST00000599833 CETN2P41208 172 aa19.56■□□□□ 0.72
SHKBP1-221ENST00000599833 RPL26P61254 145 aaKnown RBP19.56■□□□□ 0.72
SHKBP1-221ENST00000599833 OVGP1Q12889 678 aa19.56■□□□□ 0.72
SHKBP1-221ENST00000599833 STAT4Q14765 748 aa19.56■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms