RNA–Protein interactions for RNA: ENST00000596549.5

LIG1-212, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 580 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-212ENST00000596549 LAMA5O15230 3695 aa13.12□□□□□ -0.31
LIG1-212ENST00000596549 RP1P56715 2156 aa13.11□□□□□ -0.31
LIG1-212ENST00000596549 CFAP69A5D8W1 941 aa13.11□□□□□ -0.31
LIG1-212ENST00000596549 NEMP2A6NFY4 417 aa13.11□□□□□ -0.31
LIG1-212ENST00000596549 A8MX80 341 aa13.11□□□□□ -0.31
LIG1-212ENST00000596549 CASC3O15234 703 aaKnown RBP13.11□□□□□ -0.31
LIG1-212ENST00000596549 CBFA2T2O43439 604 aa13.11□□□□□ -0.31
LIG1-212ENST00000596549 RECQL5O94762 991 aaPredicted RBP13.11□□□□□ -0.31
LIG1-212ENST00000596549 CPP00450 1065 aa13.11□□□□□ -0.31
LIG1-212ENST00000596549 H2AFZP0C0S5 128 aa13.11□□□□□ -0.31
LIG1-212ENST00000596549 TMEM253P0C7T8 217 aa13.11□□□□□ -0.31
LIG1-212ENST00000596549 ELFN1P0C7U0 828 aa13.11□□□□□ -0.31
LIG1-212ENST00000596549 TSHRP16473 764 aa13.11□□□□□ -0.31
LIG1-212ENST00000596549 MAN1A1P33908 653 aa13.11□□□□□ -0.31
LIG1-212ENST00000596549 HSPA9P38646 679 aaKnown RBP13.11□□□□□ -0.31
LIG1-212ENST00000596549 GARSP41250 739 aaKnown RBP13.11□□□□□ -0.31
LIG1-212ENST00000596549 SSR1P43307 286 aaKnown RBP13.11□□□□□ -0.31
LIG1-212ENST00000596549 MMP13P45452 471 aa13.11□□□□□ -0.31
LIG1-212ENST00000596549 GALNT2Q10471 571 aa13.11□□□□□ -0.31
LIG1-212ENST00000596549 MTM1Q13496 603 aa13.11□□□□□ -0.31
LIG1-212ENST00000596549 IHHQ14623 411 aa13.11□□□□□ -0.31
LIG1-212ENST00000596549 INPP5AQ14642 412 aa13.11□□□□□ -0.31
LIG1-212ENST00000596549 PTPRRQ15256 657 aa13.11□□□□□ -0.31
LIG1-212ENST00000596549 CNGA3Q16281 694 aa13.11□□□□□ -0.31
LIG1-212ENST00000596549 HADHQ16836 314 aaKnown RBP13.11□□□□□ -0.31
LIG1-212ENST00000596549 HS1BP3Q53T59 392 aa13.11□□□□□ -0.31
LIG1-212ENST00000596549 PRRT3Q5FWE3 981 aa13.11□□□□□ -0.31
LIG1-212ENST00000596549 CDCP2Q5VXM1 449 aa13.11□□□□□ -0.31
LIG1-212ENST00000596549 H2AFVQ71UI9 128 aa13.11□□□□□ -0.31
LIG1-212ENST00000596549 SLC35F3Q8IY50 421 aa13.11□□□□□ -0.31
LIG1-212ENST00000596549 TEX26Q8N6G2 289 aa13.11□□□□□ -0.31
LIG1-212ENST00000596549 OR8K1Q8NGG5 319 aa13.11□□□□□ -0.31
LIG1-212ENST00000596549 IFI44Q8TCB0 444 aa13.11□□□□□ -0.31
LIG1-212ENST00000596549 BTN2A2Q8WVV5 523 aa13.11□□□□□ -0.31
LIG1-212ENST00000596549 NXPE2Q96DL1 559 aa13.11□□□□□ -0.31
LIG1-212ENST00000596549 APOOQ9BUR5 198 aa13.11□□□□□ -0.31
LIG1-212ENST00000596549 BOCQ9BWV1 1114 aa13.11□□□□□ -0.31
LIG1-212ENST00000596549 NOD2Q9HC29 1040 aa13.11□□□□□ -0.31
LIG1-212ENST00000596549 SCUBE2Q9NQ36 999 aa13.11□□□□□ -0.31
LIG1-212ENST00000596549 SPASTQ9UBP0 616 aa13.11□□□□□ -0.31
LIG1-212ENST00000596549 CLCA2Q9UQC9 943 aa13.11□□□□□ -0.31
LIG1-212ENST00000596549 PCDHB1Q9Y5F3 818 aa13.11□□□□□ -0.31
LIG1-212ENST00000596549 PCDHGC4Q9Y5F7 938 aa13.11□□□□□ -0.31
LIG1-212ENST00000596549 ITPR1Q14643 2758 aa13.11□□□□□ -0.31
LIG1-212ENST00000596549 BAHCC1Q9P281 2608 aa13.1□□□□□ -0.31
LIG1-212ENST00000596549 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP13.1□□□□□ -0.31
LIG1-212ENST00000596549 NPIPB15A6NHN6 443 aaPredicted RBP13.1□□□□□ -0.31
LIG1-212ENST00000596549 TPP1O14773 563 aa13.1□□□□□ -0.31
LIG1-212ENST00000596549 LZTS3O60299 673 aaPredicted RBP13.1□□□□□ -0.31
LIG1-212ENST00000596549 OPA1O60313 960 aa13.1□□□□□ -0.31
LIG1-212ENST00000596549 GP1BAP07359 652 aa13.1□□□□□ -0.31
LIG1-212ENST00000596549 PEX5P50542 639 aa13.1□□□□□ -0.31
LIG1-212ENST00000596549 HK3P52790 923 aa13.1□□□□□ -0.31
LIG1-212ENST00000596549 ADKP55263 362 aaKnown RBP13.1□□□□□ -0.31
LIG1-212ENST00000596549 PPARDQ03181 441 aa13.1□□□□□ -0.31
LIG1-212ENST00000596549 TCEA2Q15560 299 aa13.1□□□□□ -0.31
LIG1-212ENST00000596549 CDKN3Q16667 212 aa13.1□□□□□ -0.31
LIG1-212ENST00000596549 ANKRD20A8PQ5CZ79 823 aa13.1□□□□□ -0.31
LIG1-212ENST00000596549 PERM1Q5SV97 790 aa13.1□□□□□ -0.31
LIG1-212ENST00000596549 C6orf132Q5T0Z8 1188 aa13.1□□□□□ -0.31
LIG1-212ENST00000596549 MARC1Q5VT66 337 aa13.1□□□□□ -0.31
LIG1-212ENST00000596549 ALG1LQ6GMV1 187 aa13.1□□□□□ -0.31
LIG1-212ENST00000596549 CACTIN-AS1Q8N1I8 211 aa13.1□□□□□ -0.31
LIG1-212ENST00000596549 PQLC3Q8N755 202 aa13.1□□□□□ -0.31
LIG1-212ENST00000596549 PDCD6IPQ8WUM4 868 aaKnown RBP13.1□□□□□ -0.31
LIG1-212ENST00000596549 LRRN4Q8WUT4 740 aa13.1□□□□□ -0.31
LIG1-212ENST00000596549 MAML1Q92585 1016 aa13.1□□□□□ -0.31
LIG1-212ENST00000596549 TSACCQ96A04 125 aaPredicted RBP13.1□□□□□ -0.31
LIG1-212ENST00000596549 COQ10AQ96MF6 247 aa13.1□□□□□ -0.31
LIG1-212ENST00000596549 DEF6Q9H4E7 631 aa13.1□□□□□ -0.31
LIG1-212ENST00000596549 FGF22Q9HCT0 170 aa13.1□□□□□ -0.31
LIG1-212ENST00000596549 NT5MQ9NPB1 228 aa13.1□□□□□ -0.31
LIG1-212ENST00000596549 SALL4Q9UJQ4 1053 aa13.1□□□□□ -0.31
LIG1-212ENST00000596549 ASXL3Q9C0F0 2248 aa13.1□□□□□ -0.31
LIG1-212ENST00000596549 CHD6Q8TD26 2715 aa13.1□□□□□ -0.31
LIG1-212ENST00000596549 APC2O95996 2303 aa13.1□□□□□ -0.31
LIG1-212ENST00000596549 A0A0U1RQS6 177 aa13.09□□□□□ -0.31
LIG1-212ENST00000596549 EME2A4GXA9 379 aaPredicted RBP13.09□□□□□ -0.31
LIG1-212ENST00000596549 TMEM202A6NGA9 273 aa13.09□□□□□ -0.31
LIG1-212ENST00000596549 TMEM110-MUSTN1A8MSY1 372 aa13.09□□□□□ -0.31
LIG1-212ENST00000596549 LMO7DNF2Z398 122 aa13.09□□□□□ -0.31
LIG1-212ENST00000596549 TLX3O43711 291 aaPredicted RBP13.09□□□□□ -0.31
LIG1-212ENST00000596549 FZD6O60353 706 aa13.09□□□□□ -0.31
LIG1-212ENST00000596549 HEXIM1O94992 359 aaKnown RBP13.09□□□□□ -0.31
LIG1-212ENST00000596549 MT-CO3P00414 261 aa13.09□□□□□ -0.31
LIG1-212ENST00000596549 TGM2P21980 687 aa13.09□□□□□ -0.31
LIG1-212ENST00000596549 VIPR1P32241 457 aa13.09□□□□□ -0.31
LIG1-212ENST00000596549 KIAA1024LP59773 190 aa13.09□□□□□ -0.31
LIG1-212ENST00000596549 GBE1Q04446 702 aa13.09□□□□□ -0.31
LIG1-212ENST00000596549 RTP5Q14D33 572 aa13.09□□□□□ -0.31
LIG1-212ENST00000596549 FAXCQ5TGI0 409 aa13.09□□□□□ -0.31
LIG1-212ENST00000596549 ESRP1Q6NXG1 681 aaKnown RBP13.09□□□□□ -0.31
LIG1-212ENST00000596549 CRTC1Q6UUV9 634 aa13.09□□□□□ -0.31
LIG1-212ENST00000596549 ENPP7Q6UWV6 458 aa13.09□□□□□ -0.31
LIG1-212ENST00000596549 TSPAN33Q86UF1 283 aa13.09□□□□□ -0.31
LIG1-212ENST00000596549 HID1Q8IV36 788 aa13.09□□□□□ -0.31
LIG1-212ENST00000596549 RAPGEF5Q92565 580 aa13.09□□□□□ -0.31
LIG1-212ENST00000596549 WDR92Q96MX6 357 aa13.09□□□□□ -0.31
LIG1-212ENST00000596549 SMIM14Q96QK8 99 aa13.09□□□□□ -0.31
LIG1-212ENST00000596549 MCCC1Q96RQ3 725 aaPredicted RBP13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms