RNA–Protein interactions for RNA: ENST00000583344.1

SMCHD1-208, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 738 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-208ENST00000583344 MST1RQ04912 1400 aa4.26□□□□□ -1.73
SMCHD1-208ENST00000583344 RIMS2Q9UQ26 1411 aa4.26□□□□□ -1.73
SMCHD1-208ENST00000583344 ARHGEF10O15013 1369 aa4.26□□□□□ -1.73
SMCHD1-208ENST00000583344 CFAP65Q6ZU64 1925 aaKnown RBP4.25□□□□□ -1.73
SMCHD1-208ENST00000583344 DLG5Q8TDM6 1919 aa4.25□□□□□ -1.73
SMCHD1-208ENST00000583344 UQCRHLA0A096LP55 91 aa4.25□□□□□ -1.73
SMCHD1-208ENST00000583344 LGALS16A8MUM7 142 aa4.25□□□□□ -1.73
SMCHD1-208ENST00000583344 EFCAB8A8MWE9 144 aa4.25□□□□□ -1.73
SMCHD1-208ENST00000583344 KDM4EB2RXH2 506 aaPredicted RBP4.25□□□□□ -1.73
SMCHD1-208ENST00000583344 EYA2O00167 538 aa4.25□□□□□ -1.73
SMCHD1-208ENST00000583344 SYN3O14994 580 aa4.25□□□□□ -1.73
SMCHD1-208ENST00000583344 RNMTO43148 476 aaKnown RBP4.25□□□□□ -1.73
SMCHD1-208ENST00000583344 NBNO60934 754 aa4.25□□□□□ -1.73
SMCHD1-208ENST00000583344 AFPP02771 609 aaKnown RBP4.25□□□□□ -1.73
SMCHD1-208ENST00000583344 UQCRHP07919 91 aa4.25□□□□□ -1.73
SMCHD1-208ENST00000583344 MX1P20591 662 aa4.25□□□□□ -1.73
SMCHD1-208ENST00000583344 MCCP23508 829 aa4.25□□□□□ -1.73
SMCHD1-208ENST00000583344 BDNFP23560 247 aa4.25□□□□□ -1.73
SMCHD1-208ENST00000583344 HSPA4P34932 840 aa4.25□□□□□ -1.73
SMCHD1-208ENST00000583344 HALP42357 657 aa4.25□□□□□ -1.73
SMCHD1-208ENST00000583344 MXI1P50539 228 aa4.25□□□□□ -1.73
SMCHD1-208ENST00000583344 CRB1P82279 1406 aa4.25□□□□□ -1.73
SMCHD1-208ENST00000583344 ILF3Q12906 894 aaKnown RBP eCLIP4.25□□□□□ -1.73
SMCHD1-208ENST00000583344 BIRC3Q13489 604 aa4.25□□□□□ -1.73
SMCHD1-208ENST00000583344 SF3B4Q15427 424 aaKnown RBP eCLIP4.25□□□□□ -1.732e-7■■■■■ 46.6
SMCHD1-208ENST00000583344 LRRC24Q50LG9 513 aa4.25□□□□□ -1.73
SMCHD1-208ENST00000583344 ATPAF1Q5TC12 328 aaPredicted RBP4.25□□□□□ -1.73
SMCHD1-208ENST00000583344 NFRKBQ6P4R8 1299 aa4.25□□□□□ -1.73
SMCHD1-208ENST00000583344 SYNE3Q6ZMZ3 975 aa4.25□□□□□ -1.73
SMCHD1-208ENST00000583344 ZDHHC23Q8IYP9 409 aa4.25□□□□□ -1.73
SMCHD1-208ENST00000583344 TEX45Q8NA69 505 aa4.25□□□□□ -1.73
SMCHD1-208ENST00000583344 TEX19Q8NA77 164 aa4.25□□□□□ -1.73
SMCHD1-208ENST00000583344 SCAMP5Q8TAC9 235 aa4.25□□□□□ -1.73
SMCHD1-208ENST00000583344 OTUD7AQ8TE49 926 aaPredicted RBP4.25□□□□□ -1.73
SMCHD1-208ENST00000583344 PIBF1Q8WXW3 757 aa4.25□□□□□ -1.73
SMCHD1-208ENST00000583344 TMEM18Q96B42 140 aa4.25□□□□□ -1.73
SMCHD1-208ENST00000583344 CADM1Q9BY67 442 aaKnown RBP4.25□□□□□ -1.73
SMCHD1-208ENST00000583344 GAREM1Q9H706 876 aa4.25□□□□□ -1.73
SMCHD1-208ENST00000583344 ELAC1Q9H777 363 aaKnown RBP4.25□□□□□ -1.73
SMCHD1-208ENST00000583344 MALT1Q9UDY8 824 aa4.25□□□□□ -1.73
SMCHD1-208ENST00000583344 KLQ9UEF7 1012 aa4.25□□□□□ -1.73
SMCHD1-208ENST00000583344 GTF2A1LQ9UNN4 478 aa4.25□□□□□ -1.73
SMCHD1-208ENST00000583344 DIP2CQ9Y2E4 1556 aa4.25□□□□□ -1.73
SMCHD1-208ENST00000583344 SYCE3A1L190 88 aa4.24□□□□□ -1.73
SMCHD1-208ENST00000583344 TMEM247A6NEH6 219 aa4.24□□□□□ -1.73
SMCHD1-208ENST00000583344 F5H423 210 aaPredicted RBP4.24□□□□□ -1.73
SMCHD1-208ENST00000583344 MMP3P08254 477 aa4.24□□□□□ -1.73
SMCHD1-208ENST00000583344 SETSIPP0DME0 302 aa4.24□□□□□ -1.73
SMCHD1-208ENST00000583344 CKMT1AP12532 417 aa4.24□□□□□ -1.73
SMCHD1-208ENST00000583344 AVPR2P30518 371 aa4.24□□□□□ -1.73
SMCHD1-208ENST00000583344 PPM1AP35813 382 aa4.24□□□□□ -1.73
SMCHD1-208ENST00000583344 TECP42680 631 aa4.24□□□□□ -1.73
SMCHD1-208ENST00000583344 UBE2HP62256 183 aa4.24□□□□□ -1.73
SMCHD1-208ENST00000583344 SNTA1Q13424 505 aa4.24□□□□□ -1.73
SMCHD1-208ENST00000583344 EIF4A2Q14240 407 aaKnown RBP4.24□□□□□ -1.73
SMCHD1-208ENST00000583344 RPS6KA2Q15349 733 aa4.24□□□□□ -1.73
SMCHD1-208ENST00000583344 TBC1D9BQ66K14 1250 aa4.24□□□□□ -1.73
SMCHD1-208ENST00000583344 XRRA1Q6P2D8 792 aa4.24□□□□□ -1.73
SMCHD1-208ENST00000583344 PCGF5Q86SE9 256 aa4.24□□□□□ -1.73
SMCHD1-208ENST00000583344 SCAIQ8N9R8 606 aa4.24□□□□□ -1.73
SMCHD1-208ENST00000583344 TMEM41AQ96HV5 264 aa4.24□□□□□ -1.73
SMCHD1-208ENST00000583344 ZSCAN31Q96LW9 406 aaPredicted RBP4.24□□□□□ -1.73
SMCHD1-208ENST00000583344 TTC14Q96N46 770 aa4.24□□□□□ -1.73
SMCHD1-208ENST00000583344 PIGSQ96S52 555 aa4.24□□□□□ -1.73
SMCHD1-208ENST00000583344 FUCA2Q9BTY2 467 aa4.24□□□□□ -1.73
SMCHD1-208ENST00000583344 KATNAL1Q9BW62 490 aa4.24□□□□□ -1.73
SMCHD1-208ENST00000583344 CCDC94Q9BW85 323 aaPredicted RBP4.24□□□□□ -1.73
SMCHD1-208ENST00000583344 LRRCC1Q9C099 1032 aa4.24□□□□□ -1.73
SMCHD1-208ENST00000583344 NPFFR1Q9GZQ6 430 aa4.24□□□□□ -1.73
SMCHD1-208ENST00000583344 ALDH8A1Q9H2A2 487 aaPredicted RBP4.24□□□□□ -1.73
SMCHD1-208ENST00000583344 ABHD16BQ9H3Z7 469 aa4.24□□□□□ -1.73
SMCHD1-208ENST00000583344 MAP3K20Q9NYL2 800 aaKnown RBP4.24□□□□□ -1.73
SMCHD1-208ENST00000583344 MORC2Q9Y6X9 1032 aaPredicted RBP4.24□□□□□ -1.73
SMCHD1-208ENST00000583344 A2ML1A8K2U0 1454 aa4.24□□□□□ -1.73
SMCHD1-208ENST00000583344 TTC21BQ7Z4L5 1316 aa4.23□□□□□ -1.73
SMCHD1-208ENST00000583344 TECPR2O15040 1411 aa4.23□□□□□ -1.73
SMCHD1-208ENST00000583344 DYTNA2CJ06 578 aa4.23□□□□□ -1.73
SMCHD1-208ENST00000583344 TARSL2A2RTX5 802 aaKnown RBP4.23□□□□□ -1.73
SMCHD1-208ENST00000583344 PRR23AA6NEV1 266 aa4.23□□□□□ -1.73
SMCHD1-208ENST00000583344 C17orf100A8MU93 164 aa4.23□□□□□ -1.73
SMCHD1-208ENST00000583344 BMPR1BO00238 502 aa4.23□□□□□ -1.73
SMCHD1-208ENST00000583344 ACTL6BO94805 426 aa4.23□□□□□ -1.73
SMCHD1-208ENST00000583344 SP1P08047 785 aa4.23□□□□□ -1.73
SMCHD1-208ENST00000583344 DAOP14920 347 aa4.23□□□□□ -1.73
SMCHD1-208ENST00000583344 MAN1A1P33908 653 aa4.23□□□□□ -1.73
SMCHD1-208ENST00000583344 DPP6P42658 865 aa4.23□□□□□ -1.73
SMCHD1-208ENST00000583344 CDK7P50613 346 aa4.23□□□□□ -1.73
SMCHD1-208ENST00000583344 PNLIPRP1P54315 467 aa4.23□□□□□ -1.73
SMCHD1-208ENST00000583344 MYBPHQ13203 477 aa4.23□□□□□ -1.73
SMCHD1-208ENST00000583344 DCTN1Q14203 1278 aa4.23□□□□□ -1.73
SMCHD1-208ENST00000583344 PTK2BQ14289 1009 aa4.23□□□□□ -1.73
SMCHD1-208ENST00000583344 SYCP1Q15431 976 aa4.23□□□□□ -1.73
SMCHD1-208ENST00000583344 MAPRE1Q15691 268 aaKnown RBP4.23□□□□□ -1.73
SMCHD1-208ENST00000583344 MRGPRG-AS1Q2M3A8 158 aa4.23□□□□□ -1.73
SMCHD1-208ENST00000583344 EFHC1Q5JVL4 640 aa4.23□□□□□ -1.73
SMCHD1-208ENST00000583344 CCDC183Q5T5S1 534 aa4.23□□□□□ -1.73
SMCHD1-208ENST00000583344 CCDC30Q5VVM6 783 aa4.23□□□□□ -1.73
SMCHD1-208ENST00000583344 TMEM268Q5VZI3 342 aa4.23□□□□□ -1.73
SMCHD1-208ENST00000583344 SULT6B1Q6IMI4 303 aa4.23□□□□□ -1.73
SMCHD1-208ENST00000583344 TYW3Q6IPR3 259 aaKnown RBP4.23□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms