RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 UGT1A7Q9HAW7 530 aa25.21■■□□□ 1.63
SHMT1-207ENST00000580002 UGT1A10Q9HAW8 530 aa25.21■■□□□ 1.63
SHMT1-207ENST00000580002 UGT1A8Q9HAW9 530 aa25.21■■□□□ 1.63
SHMT1-207ENST00000580002 MOCS1Q9NZB8 636 aa25.21■■□□□ 1.63
SHMT1-207ENST00000580002 PPM1HQ9ULR3 514 aa25.21■■□□□ 1.63
SHMT1-207ENST00000580002 A0A0J9YYE9 177 aa25.21■■□□□ 1.63
SHMT1-207ENST00000580002 KLF8O95600 359 aaPredicted RBP25.21■■□□□ 1.63
SHMT1-207ENST00000580002 TRBC1P01850 177 aa25.21■■□□□ 1.63
SHMT1-207ENST00000580002 POLBP06746 335 aa25.21■■□□□ 1.63
SHMT1-207ENST00000580002 TIMP2P16035 220 aa25.21■■□□□ 1.63
SHMT1-207ENST00000580002 ARNTP27540 789 aa25.21■■□□□ 1.63
SHMT1-207ENST00000580002 KBTBD12Q3ZCT8 623 aa25.21■■□□□ 1.63
SHMT1-207ENST00000580002 CEP85LQ5SZL2 805 aa25.21■■□□□ 1.63
SHMT1-207ENST00000580002 TSTD2Q5T7W7 516 aa25.21■■□□□ 1.63
SHMT1-207ENST00000580002 TSPAN33Q86UF1 283 aa25.21■■□□□ 1.63
SHMT1-207ENST00000580002 MMAAQ8IVH4 418 aaKnown RBP25.21■■□□□ 1.63
SHMT1-207ENST00000580002 BRSK1Q8TDC3 778 aa25.21■■□□□ 1.63
SHMT1-207ENST00000580002 ARRDC3Q96B67 414 aa25.21■■□□□ 1.63
SHMT1-207ENST00000580002 TREX1Q9NSU2 369 aa25.21■■□□□ 1.63
SHMT1-207ENST00000580002 CTNNAL1Q9UBT7 734 aa25.21■■□□□ 1.63
SHMT1-207ENST00000580002 PRKAG3Q9UGI9 489 aa25.21■■□□□ 1.63
SHMT1-207ENST00000580002 MTF2Q9Y483 593 aaPredicted RBP25.21■■□□□ 1.63
SHMT1-207ENST00000580002 FAM169AQ9Y6X4 670 aa25.21■■□□□ 1.63
SHMT1-207ENST00000580002 MAGEB16A2A368 324 aa25.2■■□□□ 1.62
SHMT1-207ENST00000580002 KRBA1A5PL33 1030 aa25.2■■□□□ 1.62
SHMT1-207ENST00000580002 C19orf67A6NJJ6 358 aa25.2■■□□□ 1.62
SHMT1-207ENST00000580002 GOLGA8CPA6NN73 597 aa25.2■■□□□ 1.62
SHMT1-207ENST00000580002 RNF40O75150 1001 aa25.2■■□□□ 1.62
SHMT1-207ENST00000580002 USP1O94782 785 aa25.2■■□□□ 1.62
SHMT1-207ENST00000580002 COL9A1P20849 921 aa25.2■■□□□ 1.62
SHMT1-207ENST00000580002 DRD1P21728 446 aa25.2■■□□□ 1.62
SHMT1-207ENST00000580002 CA4P22748 312 aa25.2■■□□□ 1.62
SHMT1-207ENST00000580002 MLF2Q15773 248 aaPredicted RBP25.2■■□□□ 1.62
SHMT1-207ENST00000580002 CDKN3Q16667 212 aa25.2■■□□□ 1.62
SHMT1-207ENST00000580002 TTC30BQ8N4P2 665 aa25.2■■□□□ 1.62
SHMT1-207ENST00000580002 TXNDC5Q8NBS9 432 aaKnown RBP25.2■■□□□ 1.62
SHMT1-207ENST00000580002 OR13J1Q8NGT2 312 aa25.2■■□□□ 1.62
SHMT1-207ENST00000580002 PIP4K2CQ8TBX8 421 aa25.2■■□□□ 1.62
SHMT1-207ENST00000580002 OR8D1Q8WZ84 308 aa25.2■■□□□ 1.62
SHMT1-207ENST00000580002 DNAJC1Q96KC8 554 aaKnown RBP25.2■■□□□ 1.62
SHMT1-207ENST00000580002 RANBP9Q96S59 729 aa25.2■■□□□ 1.62
SHMT1-207ENST00000580002 SUDS3Q9H7L9 328 aaPredicted RBP25.2■■□□□ 1.62
SHMT1-207ENST00000580002 BPIFA1Q9NP55 256 aa25.2■■□□□ 1.62
SHMT1-207ENST00000580002 CD320Q9NPF0 282 aa25.2■■□□□ 1.62
SHMT1-207ENST00000580002 TLDC2A0PJX2 215 aa25.19■■□□□ 1.62
SHMT1-207ENST00000580002 HEATR9A2RTY3 570 aa25.19■■□□□ 1.62
SHMT1-207ENST00000580002 NPIPB15A6NHN6 443 aaPredicted RBP25.19■■□□□ 1.62
SHMT1-207ENST00000580002 FOXO6A8MYZ6 492 aa25.19■■□□□ 1.62
SHMT1-207ENST00000580002 POC1B-GALNT4F8VUJ3 575 aa25.19■■□□□ 1.62
SHMT1-207ENST00000580002 KPNA3O00505 521 aaPredicted RBP25.19■■□□□ 1.62
SHMT1-207ENST00000580002 FAM155BO75949 473 aa25.19■■□□□ 1.62
SHMT1-207ENST00000580002 GRIA4P48058 902 aa25.19■■□□□ 1.62
SHMT1-207ENST00000580002 IFFO1Q0D2I5 559 aa25.19■■□□□ 1.62
SHMT1-207ENST00000580002 LYSMD3Q7Z3D4 306 aa25.19■■□□□ 1.62
SHMT1-207ENST00000580002 SLC6A17Q9H1V8 727 aa25.19■■□□□ 1.62
SHMT1-207ENST00000580002 SUN2Q9UH99 717 aa25.19■■□□□ 1.62
SHMT1-207ENST00000580002 C16orf96A6NNT2 1141 aa25.18■■□□□ 1.62
SHMT1-207ENST00000580002 ALDH1A2O94788 518 aa25.18■■□□□ 1.62
SHMT1-207ENST00000580002 IL1BP01584 269 aa25.18■■□□□ 1.62
SHMT1-207ENST00000580002 GLULP15104 373 aa25.18■■□□□ 1.62
SHMT1-207ENST00000580002 CCINQ13939 588 aa25.18■■□□□ 1.62
SHMT1-207ENST00000580002 ELAVL3Q14576 367 aaKnown RBP25.18■■□□□ 1.62
SHMT1-207ENST00000580002 ZNF805Q5CZA5 627 aa25.18■■□□□ 1.62
SHMT1-207ENST00000580002 SPANXN3Q5MJ09 141 aa25.18■■□□□ 1.62
SHMT1-207ENST00000580002 PARS2Q7L3T8 475 aaKnown RBP25.18■■□□□ 1.62
SHMT1-207ENST00000580002 GLT6D1Q7Z4J2 308 aa25.18■■□□□ 1.62
SHMT1-207ENST00000580002 SERBP1Q8NC51 408 aaKnown RBP eCLIP25.18■■□□□ 1.62
SHMT1-207ENST00000580002 NAT9Q9BTE0 207 aa25.18■■□□□ 1.62
SHMT1-207ENST00000580002 ACSS3Q9H6R3 686 aa25.18■■□□□ 1.62
SHMT1-207ENST00000580002 PPANQ9NQ55 473 aaKnown RBP25.18■■□□□ 1.62
SHMT1-207ENST00000580002 PHTF1Q9UMS5 762 aa25.18■■□□□ 1.62
SHMT1-207ENST00000580002 SORCS3Q9UPU3 1222 aa25.18■■□□□ 1.62
SHMT1-207ENST00000580002 ZNF711Q9Y462 761 aa25.18■■□□□ 1.62
SHMT1-207ENST00000580002 OR51F1A6NGY5 319 aa25.18■■□□□ 1.62
SHMT1-207ENST00000580002 VAPBO95292 243 aa25.18■■□□□ 1.62
SHMT1-207ENST00000580002 CLDN7O95471 211 aa25.18■■□□□ 1.62
SHMT1-207ENST00000580002 TSHRP16473 764 aa25.18■■□□□ 1.62
SHMT1-207ENST00000580002 NTSR1P30989 418 aa25.18■■□□□ 1.62
SHMT1-207ENST00000580002 PHBP35232 272 aa25.18■■□□□ 1.62
SHMT1-207ENST00000580002 ARCN1P48444 511 aaKnown RBP25.18■■□□□ 1.62
SHMT1-207ENST00000580002 CRTC1Q6UUV9 634 aa25.18■■□□□ 1.62
SHMT1-207ENST00000580002 LRIG3Q6UXM1 1119 aa25.18■■□□□ 1.62
SHMT1-207ENST00000580002 CCNJLQ8IV13 435 aa25.18■■□□□ 1.62
SHMT1-207ENST00000580002 ARL8AQ96BM9 186 aa25.18■■□□□ 1.62
SHMT1-207ENST00000580002 TBATAQ96M53 351 aa25.18■■□□□ 1.62
SHMT1-207ENST00000580002 AGAP2Q99490 1192 aa25.18■■□□□ 1.62
SHMT1-207ENST00000580002 MRM3Q9HC36 420 aaKnown RBP25.18■■□□□ 1.62
SHMT1-207ENST00000580002 ATP8B1O43520 1251 aa25.17■■□□□ 1.62
SHMT1-207ENST00000580002 RPL26P61254 145 aaKnown RBP25.17■■□□□ 1.62
SHMT1-207ENST00000580002 GRM3Q14832 879 aa25.17■■□□□ 1.62
SHMT1-207ENST00000580002 UGP2Q16851 508 aa25.17■■□□□ 1.62
SHMT1-207ENST00000580002 Q6ZS52 159 aa25.17■■□□□ 1.62
SHMT1-207ENST00000580002 OR4K2Q8NGD2 314 aa25.17■■□□□ 1.62
SHMT1-207ENST00000580002 RPLP0P6Q8NHW5 317 aa25.17■■□□□ 1.62
SHMT1-207ENST00000580002 MAGEE1Q9HCI5 957 aa25.17■■□□□ 1.62
SHMT1-207ENST00000580002 C20orf96Q9NUD7 363 aaPredicted RBP25.17■■□□□ 1.62
SHMT1-207ENST00000580002 GGT7Q9UJ14 662 aa25.17■■□□□ 1.62
SHMT1-207ENST00000580002 RPL26L1Q9UNX3 145 aaKnown RBP25.17■■□□□ 1.62
SHMT1-207ENST00000580002 PPIL1Q9Y3C6 166 aa25.17■■□□□ 1.62
SHMT1-207ENST00000580002 EXOC1LA0A1B0GW35 172 aa25.16■■□□□ 1.62
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms