RNA–Protein interactions for RNA: ENST00000573474.5

CCDC40-209, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 554 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-209ENST00000573474 HCN2Q9UL51 889 aa13.75□□□□□ -0.21
CCDC40-209ENST00000573474 PPIL1Q9Y3C6 166 aa13.75□□□□□ -0.21
CCDC40-209ENST00000573474 SPO11Q9Y5K1 396 aa13.75□□□□□ -0.21
CCDC40-209ENST00000573474 IKBKGQ9Y6K9 419 aa13.75□□□□□ -0.21
CCDC40-209ENST00000573474 WASF2Q9Y6W5 498 aa13.75□□□□□ -0.21
CCDC40-209ENST00000573474 PIAS3Q9Y6X2 628 aa13.75□□□□□ -0.21
CCDC40-209ENST00000573474 MIA3Q5JRA6 1907 aa13.74□□□□□ -0.21
CCDC40-209ENST00000573474 A0A0J9YYE9 177 aa13.74□□□□□ -0.21
CCDC40-209ENST00000573474 CCDC78A2IDD5 438 aa13.74□□□□□ -0.21
CCDC40-209ENST00000573474 CXorf49A8MYA2 514 aaPredicted RBP13.74□□□□□ -0.21
CCDC40-209ENST00000573474 HMGB1P1B2RPK0 211 aaPredicted RBP13.74□□□□□ -0.21
CCDC40-209ENST00000573474 LOC730098B7Z3J9 87 aa13.74□□□□□ -0.21
CCDC40-209ENST00000573474 H3BQF6 201 aa13.74□□□□□ -0.21
CCDC40-209ENST00000573474 K7EQS6 105 aa13.74□□□□□ -0.21
CCDC40-209ENST00000573474 SIN3BO75182 1162 aa13.74□□□□□ -0.21
CCDC40-209ENST00000573474 LEFTY1O75610 366 aa13.74□□□□□ -0.21
CCDC40-209ENST00000573474 TRBC1P01850 177 aa13.74□□□□□ -0.21
CCDC40-209ENST00000573474 PRNPP04156 253 aa13.74□□□□□ -0.21
CCDC40-209ENST00000573474 PRKCGP05129 697 aa13.74□□□□□ -0.21
CCDC40-209ENST00000573474 INHBAP08476 426 aa13.74□□□□□ -0.21
CCDC40-209ENST00000573474 ERVK-10P10266 1014 aa13.74□□□□□ -0.21
CCDC40-209ENST00000573474 HLA-EP13747 358 aa13.74□□□□□ -0.21
CCDC40-209ENST00000573474 IL12RB1P42701 662 aa13.74□□□□□ -0.21
CCDC40-209ENST00000573474 TDGQ13569 410 aa13.74□□□□□ -0.21
CCDC40-209ENST00000573474 CNGA3Q16281 694 aa13.74□□□□□ -0.21
CCDC40-209ENST00000573474 EGFLAMQ63HQ2 1017 aa13.74□□□□□ -0.21
CCDC40-209ENST00000573474 BRAT1Q6PJG6 821 aa13.74□□□□□ -0.21
CCDC40-209ENST00000573474 ADGRD1Q6QNK2 874 aa13.74□□□□□ -0.21
CCDC40-209ENST00000573474 GLT6D1Q7Z4J2 308 aa13.74□□□□□ -0.21
CCDC40-209ENST00000573474 KCNMB4Q86W47 210 aa13.74□□□□□ -0.21
CCDC40-209ENST00000573474 SLC26A11Q86WA9 606 aa13.74□□□□□ -0.21
CCDC40-209ENST00000573474 RASSF3Q86WH2 238 aa13.74□□□□□ -0.21
CCDC40-209ENST00000573474 ZNF366Q8N895 744 aa13.74□□□□□ -0.21
CCDC40-209ENST00000573474 TMIEQ8NEW7 156 aa13.74□□□□□ -0.21
CCDC40-209ENST00000573474 MDGA1Q8NFP4 955 aa13.74□□□□□ -0.21
CCDC40-209ENST00000573474 GRIN3AQ8TCU5 1115 aa13.74□□□□□ -0.21
CCDC40-209ENST00000573474 KCNV2Q8TDN2 545 aa13.74□□□□□ -0.21
CCDC40-209ENST00000573474 DCAKDQ8WVC6 231 aa13.74□□□□□ -0.21
CCDC40-209ENST00000573474 OR8D1Q8WZ84 308 aa13.74□□□□□ -0.21
CCDC40-209ENST00000573474 MRRFQ96E11 262 aaKnown RBP13.74□□□□□ -0.21
CCDC40-209ENST00000573474 MSANTD3Q96H12 275 aa13.74□□□□□ -0.21
CCDC40-209ENST00000573474 ATP6V1G3Q96LB4 118 aa13.74□□□□□ -0.21
CCDC40-209ENST00000573474 KLHL32Q96NJ5 620 aa13.74□□□□□ -0.21
CCDC40-209ENST00000573474 SLC2A4RGQ9NR83 387 aa13.74□□□□□ -0.21
CCDC40-209ENST00000573474 HEBP1Q9NRV9 189 aa13.74□□□□□ -0.21
CCDC40-209ENST00000573474 OGFRQ9NZT2 677 aa13.74□□□□□ -0.21
CCDC40-209ENST00000573474 DKK3Q9UBP4 350 aa13.74□□□□□ -0.21
CCDC40-209ENST00000573474 ZNF180Q9UJW8 692 aa13.74□□□□□ -0.21
CCDC40-209ENST00000573474 ARL5AQ9Y689 179 aa13.74□□□□□ -0.21
CCDC40-209ENST00000573474 C5orf42Q9H799 3197 aa13.73□□□□□ -0.21
CCDC40-209ENST00000573474 TSPAN11A1L157 253 aa13.73□□□□□ -0.21
CCDC40-209ENST00000573474 PIAS1O75925 651 aa13.73□□□□□ -0.21
CCDC40-209ENST00000573474 VAPBO95292 243 aa13.73□□□□□ -0.21
CCDC40-209ENST00000573474 CTSLP07711 333 aa13.73□□□□□ -0.21
CCDC40-209ENST00000573474 SRFP11831 508 aa13.73□□□□□ -0.21
CCDC40-209ENST00000573474 IL9P15248 144 aa13.73□□□□□ -0.21
CCDC40-209ENST00000573474 CTPS1P17812 591 aa13.73□□□□□ -0.21
CCDC40-209ENST00000573474 DRD1P21728 446 aa13.73□□□□□ -0.21
CCDC40-209ENST00000573474 LPOP22079 712 aaPredicted RBP13.73□□□□□ -0.21
CCDC40-209ENST00000573474 PSMA3P25788 255 aa13.73□□□□□ -0.21
CCDC40-209ENST00000573474 NFKBIAP25963 317 aa13.73□□□□□ -0.21
CCDC40-209ENST00000573474 ATP5DP30049 168 aa13.73□□□□□ -0.21
CCDC40-209ENST00000573474 HNF1BP35680 557 aa13.73□□□□□ -0.21
CCDC40-209ENST00000573474 ARCN1P48444 511 aaKnown RBP13.73□□□□□ -0.21
CCDC40-209ENST00000573474 ACVR1Q04771 509 aa13.73□□□□□ -0.21
CCDC40-209ENST00000573474 GRSF1Q12849 480 aaKnown RBP eCLIP13.73□□□□□ -0.21
CCDC40-209ENST00000573474 THOC5Q13769 683 aaKnown RBP13.73□□□□□ -0.21
CCDC40-209ENST00000573474 ENPP2Q13822 863 aa13.73□□□□□ -0.21
CCDC40-209ENST00000573474 ELAVL3Q14576 367 aaKnown RBP13.73□□□□□ -0.21
CCDC40-209ENST00000573474 PON2Q15165 354 aa13.73□□□□□ -0.21
CCDC40-209ENST00000573474 HSP90AA5PQ58FG0 334 aa13.73□□□□□ -0.21
CCDC40-209ENST00000573474 TTMPQ5BVD1 217 aa13.73□□□□□ -0.21
CCDC40-209ENST00000573474 ZNF805Q5CZA5 627 aa13.73□□□□□ -0.21
CCDC40-209ENST00000573474 TMEM196Q5HYL7 178 aa13.73□□□□□ -0.21
CCDC40-209ENST00000573474 EMC10Q5UCC4 262 aa13.73□□□□□ -0.21
CCDC40-209ENST00000573474 TXNDC11Q6PKC3 985 aa13.73□□□□□ -0.21
CCDC40-209ENST00000573474 USP45Q70EL2 814 aa13.73□□□□□ -0.21
CCDC40-209ENST00000573474 MARK2Q7KZI7 788 aaKnown RBP13.73□□□□□ -0.21
CCDC40-209ENST00000573474 ZSWIM9Q86XI8 627 aa13.73□□□□□ -0.21
CCDC40-209ENST00000573474 CNPY4Q8N129 248 aa13.73□□□□□ -0.21
CCDC40-209ENST00000573474 STK40Q8N2I9 435 aa13.73□□□□□ -0.21
CCDC40-209ENST00000573474 TTC30BQ8N4P2 665 aa13.73□□□□□ -0.21
CCDC40-209ENST00000573474 OR13J1Q8NGT2 312 aa13.73□□□□□ -0.21
CCDC40-209ENST00000573474 GABPB2Q8TAK5 448 aaPredicted RBP13.73□□□□□ -0.21
CCDC40-209ENST00000573474 SCRN2Q96FV2 425 aa13.73□□□□□ -0.21
CCDC40-209ENST00000573474 SMIM14Q96QK8 99 aa13.73□□□□□ -0.21
CCDC40-209ENST00000573474 LYSMD1Q96S90 227 aa13.73□□□□□ -0.21
CCDC40-209ENST00000573474 FAM129BQ96TA1 746 aa13.73□□□□□ -0.21
CCDC40-209ENST00000573474 NLE1Q9NVX2 485 aaPredicted RBP13.73□□□□□ -0.21
CCDC40-209ENST00000573474 NSMCE4AQ9NXX6 385 aa13.73□□□□□ -0.21
CCDC40-209ENST00000573474 EURLQ9NYK6 297 aa13.73□□□□□ -0.21
CCDC40-209ENST00000573474 ZFATQ9P243 1243 aa13.73□□□□□ -0.21
CCDC40-209ENST00000573474 ZNF711Q9Y462 761 aa13.73□□□□□ -0.21
CCDC40-209ENST00000573474 KCTD3Q9Y597 815 aa13.73□□□□□ -0.21
CCDC40-209ENST00000573474 STON1Q9Y6Q2 735 aa13.73□□□□□ -0.21
CCDC40-209ENST00000573474 TICRRQ7Z2Z1 1910 aa13.72□□□□□ -0.21
CCDC40-209ENST00000573474 CAPN8A6NHC0 703 aa13.72□□□□□ -0.21
CCDC40-209ENST00000573474 AURKAO14965 403 aa13.72□□□□□ -0.21
CCDC40-209ENST00000573474 STX7O15400 261 aaKnown RBP13.72□□□□□ -0.21
CCDC40-209ENST00000573474 SLC7A4O43246 635 aa13.72□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 70.6 ms