RNA–Protein interactions for RNA: ENST00000569063.5

CLK3-225, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 833 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-225ENST00000569063 RECQL5O94762 991 aaPredicted RBP20.38■□□□□ 0.85
CLK3-225ENST00000569063 LCA5LO95447 670 aa20.38■□□□□ 0.85
CLK3-225ENST00000569063 CPP00450 1065 aa20.38■□□□□ 0.85
CLK3-225ENST00000569063 CKMT1AP12532 417 aa20.38■□□□□ 0.85
CLK3-225ENST00000569063 CES1P23141 567 aa20.38■□□□□ 0.85
CLK3-225ENST00000569063 NFKBIAP25963 317 aa20.38■□□□□ 0.85
CLK3-225ENST00000569063 GBE1Q04446 702 aa20.38■□□□□ 0.85
CLK3-225ENST00000569063 SLC10A2Q12908 348 aaPredicted RBP20.38■□□□□ 0.85
CLK3-225ENST00000569063 TRAF2Q12933 501 aa20.38■□□□□ 0.85
CLK3-225ENST00000569063 MTM1Q13496 603 aa20.38■□□□□ 0.85
CLK3-225ENST00000569063 ALG1LQ6GMV1 187 aa20.38■□□□□ 0.85
CLK3-225ENST00000569063 HDAC11Q96DB2 347 aa20.38■□□□□ 0.85
CLK3-225ENST00000569063 MRFAP1L1Q96HT8 127 aa20.38■□□□□ 0.85
CLK3-225ENST00000569063 APOOQ9BUR5 198 aa20.38■□□□□ 0.85
CLK3-225ENST00000569063 POLR1EQ9GZS1 481 aaKnown RBP20.38■□□□□ 0.85
CLK3-225ENST00000569063 DTLQ9NZJ0 730 aa20.38■□□□□ 0.85
CLK3-225ENST00000569063 SPASTQ9UBP0 616 aa20.38■□□□□ 0.85
CLK3-225ENST00000569063 B4GALT6Q9UBX8 382 aa20.38■□□□□ 0.85
CLK3-225ENST00000569063 LRRD1A4D1F6 860 aa20.37■□□□□ 0.85
CLK3-225ENST00000569063 TPP1O14773 563 aa20.37■□□□□ 0.85
CLK3-225ENST00000569063 NEBLO76041 1014 aa20.37■□□□□ 0.85
CLK3-225ENST00000569063 PGLSO95336 258 aa20.37■□□□□ 0.85
CLK3-225ENST00000569063 MAP3K6O95382 1288 aa20.37■□□□□ 0.85
CLK3-225ENST00000569063 CCNB1P14635 433 aa20.37■□□□□ 0.85
CLK3-225ENST00000569063 GM2AP17900 193 aa20.37■□□□□ 0.85
CLK3-225ENST00000569063 MAGEA1P43355 309 aa20.37■□□□□ 0.85
CLK3-225ENST00000569063 HADHBP55084 474 aaKnown RBP20.37■□□□□ 0.85
CLK3-225ENST00000569063 CCDC170Q8IYT3 715 aa20.37■□□□□ 0.85
CLK3-225ENST00000569063 PHACTR4Q8IZ21 702 aa20.37■□□□□ 0.85
CLK3-225ENST00000569063 PDCD6IPQ8WUM4 868 aaKnown RBP20.37■□□□□ 0.85
CLK3-225ENST00000569063 ZCCHC14Q8WYQ9 949 aaKnown RBP20.37■□□□□ 0.85
CLK3-225ENST00000569063 APOLD1Q96LR9 279 aa20.37■□□□□ 0.85
CLK3-225ENST00000569063 SEMA3CQ99985 751 aa20.37■□□□□ 0.85
CLK3-225ENST00000569063 USP29Q9HBJ7 922 aa20.37■□□□□ 0.85
CLK3-225ENST00000569063 HAUS2Q9NVX0 235 aa20.37■□□□□ 0.85
CLK3-225ENST00000569063 APOBEC3BQ9UH17 382 aaKnown RBP20.37■□□□□ 0.85
CLK3-225ENST00000569063 PPIL1Q9Y3C6 166 aa20.37■□□□□ 0.85
CLK3-225ENST00000569063 WDFY3Q8IZQ1 3526 aa20.37■□□□□ 0.85
CLK3-225ENST00000569063 FAM149AA5PLN7 773 aa20.36■□□□□ 0.85
CLK3-225ENST00000569063 A8MX80 341 aa20.36■□□□□ 0.85
CLK3-225ENST00000569063 HTR1BP28222 390 aa20.36■□□□□ 0.85
CLK3-225ENST00000569063 VIPR1P32241 457 aa20.36■□□□□ 0.85
CLK3-225ENST00000569063 ZNF75DP51815 510 aa20.36■□□□□ 0.85
CLK3-225ENST00000569063 DAB2P98082 770 aa20.36■□□□□ 0.85
CLK3-225ENST00000569063 E2F1Q01094 437 aa20.36■□□□□ 0.85
CLK3-225ENST00000569063 PPARDQ03181 441 aa20.36■□□□□ 0.85
CLK3-225ENST00000569063 ITKQ08881 620 aa20.36■□□□□ 0.85
CLK3-225ENST00000569063 CAMK2BQ13554 666 aa20.36■□□□□ 0.85
CLK3-225ENST00000569063 NFATC4Q14934 902 aa20.36■□□□□ 0.85
CLK3-225ENST00000569063 PRRT3Q5FWE3 981 aa20.36■□□□□ 0.85
CLK3-225ENST00000569063 ARMC12Q5T9G4 340 aa20.36■□□□□ 0.85
CLK3-225ENST00000569063 FAXCQ5TGI0 409 aa20.36■□□□□ 0.85
CLK3-225ENST00000569063 SLC9A4Q6AI14 798 aa20.36■□□□□ 0.85
CLK3-225ENST00000569063 ZCCHC8Q6NZY4 707 aaKnown RBP20.36■□□□□ 0.85
CLK3-225ENST00000569063 MARCH9Q86YJ5 346 aa20.36■□□□□ 0.85
CLK3-225ENST00000569063 RHOT1Q8IXI2 618 aa20.36■□□□□ 0.85
CLK3-225ENST00000569063 RBFAQ8N0V3 343 aa20.36■□□□□ 0.85
CLK3-225ENST00000569063 CBARPQ8N350 705 aaPredicted RBP20.36■□□□□ 0.85
CLK3-225ENST00000569063 PLD5Q8N7P1 536 aa20.36■□□□□ 0.85
CLK3-225ENST00000569063 PLA2G15Q8NCC3 412 aa20.36■□□□□ 0.85
CLK3-225ENST00000569063 LMX1AQ8TE12 382 aa20.36■□□□□ 0.85
CLK3-225ENST00000569063 SCRN2Q96FV2 425 aa20.36■□□□□ 0.85
CLK3-225ENST00000569063 COQ10AQ96MF6 247 aa20.36■□□□□ 0.85
CLK3-225ENST00000569063 SLC13A1Q9BZW2 595 aa20.36■□□□□ 0.85
CLK3-225ENST00000569063 TCEAL2Q9H3H9 227 aaPredicted RBP20.36■□□□□ 0.85
CLK3-225ENST00000569063 RBM22Q9NW64 420 aaKnown RBP eCLIP20.36■□□□□ 0.859e-10■□□□□ 8.1
CLK3-225ENST00000569063 DDX56Q9NY93 547 aaKnown RBP20.36■□□□□ 0.85
CLK3-225ENST00000569063 OR1A2Q9Y585 309 aa20.36■□□□□ 0.85
CLK3-225ENST00000569063 RAI2Q9Y5P3 530 aa20.36■□□□□ 0.85
CLK3-225ENST00000569063 SHROOM3Q8TF72 1996 aa20.35■□□□□ 0.85
CLK3-225ENST00000569063 MAP1BP46821 2468 aaKnown RBP20.35■□□□□ 0.85
CLK3-225ENST00000569063 TDRD6O60522 2096 aaKnown RBP20.35■□□□□ 0.85
CLK3-225ENST00000569063 LY6G6EA0A0G2JKS1 128 aa20.35■□□□□ 0.85
CLK3-225ENST00000569063 FZD6O60353 706 aa20.35■□□□□ 0.85
CLK3-225ENST00000569063 GCATO75600 419 aa20.35■□□□□ 0.85
CLK3-225ENST00000569063 PCCBP05166 539 aa20.35■□□□□ 0.85
CLK3-225ENST00000569063 COMTP21964 271 aa20.35■□□□□ 0.85
CLK3-225ENST00000569063 HNF1BP35680 557 aa20.35■□□□□ 0.85
CLK3-225ENST00000569063 TRIM23P36406 574 aa20.35■□□□□ 0.85
CLK3-225ENST00000569063 BLKP51451 505 aa20.35■□□□□ 0.85
CLK3-225ENST00000569063 CACTIN-AS1Q8N1I8 211 aa20.35■□□□□ 0.85
CLK3-225ENST00000569063 ATL2Q8NHH9 583 aa20.35■□□□□ 0.85
CLK3-225ENST00000569063 TPCN2Q8NHX9 752 aa20.35■□□□□ 0.85
CLK3-225ENST00000569063 PIH1D2Q8WWB5 315 aa20.35■□□□□ 0.85
CLK3-225ENST00000569063 ZNF830Q96NB3 372 aaPredicted RBP20.35■□□□□ 0.85
CLK3-225ENST00000569063 PANX2Q96RD6 677 aa20.35■□□□□ 0.85
CLK3-225ENST00000569063 MCCC1Q96RQ3 725 aaPredicted RBP20.35■□□□□ 0.85
CLK3-225ENST00000569063 ANP32EQ9BTT0 268 aa20.35■□□□□ 0.85
CLK3-225ENST00000569063 LRRC61Q9BV99 259 aa20.35■□□□□ 0.85
CLK3-225ENST00000569063 MAK16Q9BXY0 300 aaKnown RBP20.35■□□□□ 0.85
CLK3-225ENST00000569063 EVA1BQ9NVM1 165 aa20.35■□□□□ 0.85
CLK3-225ENST00000569063 KCTD5Q9NXV2 234 aa20.35■□□□□ 0.85
CLK3-225ENST00000569063 NCKIPSDQ9NZQ3 722 aa20.35■□□□□ 0.85
CLK3-225ENST00000569063 SALL4Q9UJQ4 1053 aa20.35■□□□□ 0.85
CLK3-225ENST00000569063 U3KQA8 63 aa20.35■□□□□ 0.85
CLK3-225ENST00000569063 KMT2BQ9UMN6 2715 aaPredicted RBP20.35■□□□□ 0.85
CLK3-225ENST00000569063 LMO7DNF2Z398 122 aa20.34■□□□□ 0.85
CLK3-225ENST00000569063 HEXIM1O94992 359 aaKnown RBP20.34■□□□□ 0.85
CLK3-225ENST00000569063 GP1BAP07359 652 aa20.34■□□□□ 0.85
CLK3-225ENST00000569063 HOXC4P09017 264 aaPredicted RBP20.34■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms