RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 TMEM139Q8IV31 216 aa3.31□□□□□ -1.88
VPS35-208ENST00000568612 LINC00518Q8N0U6 118 aa3.31□□□□□ -1.88
VPS35-208ENST00000568612 PCYOX1LQ8NBM8 494 aa3.31□□□□□ -1.88
VPS35-208ENST00000568612 NLGN4YQ8NFZ3 816 aaPredicted RBP3.31□□□□□ -1.88
VPS35-208ENST00000568612 OR52K1Q8NGK4 314 aa3.31□□□□□ -1.88
VPS35-208ENST00000568612 LHFPL5Q8TAF8 219 aa3.31□□□□□ -1.88
VPS35-208ENST00000568612 ADAMTS16Q8TE57 1224 aa3.31□□□□□ -1.88
VPS35-208ENST00000568612 GIPC3Q8TF64 312 aa3.31□□□□□ -1.88
VPS35-208ENST00000568612 GRK7Q8WTQ7 553 aa3.31□□□□□ -1.88
VPS35-208ENST00000568612 CHPT1Q8WUD6 406 aa3.31□□□□□ -1.88
VPS35-208ENST00000568612 JPH3Q8WXH2 748 aaPredicted RBP3.31□□□□□ -1.88
VPS35-208ENST00000568612 RAPGEF5Q92565 580 aa3.31□□□□□ -1.88
VPS35-208ENST00000568612 PRCCQ92733 491 aaPredicted RBP3.31□□□□□ -1.88
VPS35-208ENST00000568612 RAD51AP1Q96B01 352 aa3.31□□□□□ -1.88
VPS35-208ENST00000568612 COA7Q96BR5 231 aa3.31□□□□□ -1.88
VPS35-208ENST00000568612 MARS2Q96GW9 593 aaKnown RBP3.31□□□□□ -1.88
VPS35-208ENST00000568612 FAR2Q96K12 515 aa3.31□□□□□ -1.88
VPS35-208ENST00000568612 TMEM68Q96MH6 324 aa3.31□□□□□ -1.88
VPS35-208ENST00000568612 BIRC8Q96P09 236 aa3.31□□□□□ -1.88
VPS35-208ENST00000568612 PANX2Q96RD6 677 aa3.31□□□□□ -1.88
VPS35-208ENST00000568612 USP28Q96RU2 1077 aa3.31□□□□□ -1.88
VPS35-208ENST00000568612 TESK2Q96S53 571 aa3.31□□□□□ -1.88
VPS35-208ENST00000568612 YME1L1Q96TA2 773 aa3.31□□□□□ -1.88
VPS35-208ENST00000568612 PACSIN1Q9BY11 444 aa3.31□□□□□ -1.88
VPS35-208ENST00000568612 CLPBQ9H078 707 aa3.31□□□□□ -1.88
VPS35-208ENST00000568612 RAB17Q9H0T7 212 aa3.31□□□□□ -1.88
VPS35-208ENST00000568612 RBM38Q9H0Z9 239 aaKnown RBP3.31□□□□□ -1.88
VPS35-208ENST00000568612 OR51B5Q9H339 312 aa3.31□□□□□ -1.88
VPS35-208ENST00000568612 EPS8L2Q9H6S3 715 aa3.31□□□□□ -1.88
VPS35-208ENST00000568612 C10orf88Q9H8K7 445 aa3.31□□□□□ -1.88
VPS35-208ENST00000568612 LY9Q9HBG7 655 aa3.31□□□□□ -1.88
VPS35-208ENST00000568612 USP29Q9HBJ7 922 aa3.31□□□□□ -1.88
VPS35-208ENST00000568612 ZNF287Q9HBT7 754 aa3.31□□□□□ -1.88
VPS35-208ENST00000568612 SYTL2Q9HCH5 934 aa3.31□□□□□ -1.88
VPS35-208ENST00000568612 MRPL40Q9NQ50 206 aaKnown RBP3.31□□□□□ -1.88
VPS35-208ENST00000568612 DIABLOQ9NR28 239 aa3.31□□□□□ -1.88
VPS35-208ENST00000568612 ARHGEF3Q9NR81 526 aa3.31□□□□□ -1.88
VPS35-208ENST00000568612 SMYD2Q9NRG4 433 aa3.31□□□□□ -1.88
VPS35-208ENST00000568612 TBC1D23Q9NUY8 699 aa3.31□□□□□ -1.88
VPS35-208ENST00000568612 TRNAU1APQ9NX07 287 aaKnown RBP3.31□□□□□ -1.88
VPS35-208ENST00000568612 C11orf21Q9P2W6 132 aa3.31□□□□□ -1.88
VPS35-208ENST00000568612 UVRAGQ9P2Y5 699 aa3.31□□□□□ -1.88
VPS35-208ENST00000568612 UBA2Q9UBT2 640 aaPredicted RBP3.31□□□□□ -1.88
VPS35-208ENST00000568612 SLC12A6Q9UHW9 1150 aa3.31□□□□□ -1.88
VPS35-208ENST00000568612 TAGLN3Q9UI15 199 aa3.31□□□□□ -1.88
VPS35-208ENST00000568612 SH3BGRL2Q9UJC5 107 aa3.31□□□□□ -1.88
VPS35-208ENST00000568612 ZNF112Q9UJU3 913 aa3.31□□□□□ -1.88
VPS35-208ENST00000568612 PTBP2Q9UKA9 531 aaKnown RBP3.31□□□□□ -1.88
VPS35-208ENST00000568612 DMTF1Q9Y222 760 aa3.31□□□□□ -1.88
VPS35-208ENST00000568612 DTX4Q9Y2E6 619 aa3.31□□□□□ -1.88
VPS35-208ENST00000568612 CAB39Q9Y376 341 aaPredicted RBP3.31□□□□□ -1.88
VPS35-208ENST00000568612 KLF2Q9Y5W3 355 aaPredicted RBP3.31□□□□□ -1.88
VPS35-208ENST00000568612 HS3ST4Q9Y661 456 aa3.31□□□□□ -1.88
VPS35-208ENST00000568612 DYNC1LI1Q9Y6G9 523 aaKnown RBP3.31□□□□□ -1.88
VPS35-208ENST00000568612 MYH6P13533 1939 aa3.31□□□□□ -1.88
VPS35-208ENST00000568612 WIZO95785 1651 aa3.3□□□□□ -1.88
VPS35-208ENST00000568612 SHPRHQ149N8 1683 aa3.3□□□□□ -1.88
VPS35-208ENST00000568612 MROH1Q8NDA8 1641 aa3.3□□□□□ -1.88
VPS35-208ENST00000568612 ADGRB2O60241 1585 aa3.3□□□□□ -1.88
VPS35-208ENST00000568612 URB2Q14146 1524 aaKnown RBP3.3□□□□□ -1.88
VPS35-208ENST00000568612 PRXQ9BXM0 1461 aa3.3□□□□□ -1.88
VPS35-208ENST00000568612 A0A1W2PP64 1363 aa3.3□□□□□ -1.88
VPS35-208ENST00000568612 RFX7Q2KHR2 1363 aa3.3□□□□□ -1.88
VPS35-208ENST00000568612 RTL9Q8NET4 1388 aa3.3□□□□□ -1.88
VPS35-208ENST00000568612 MED23Q9ULK4 1368 aa3.3□□□□□ -1.88
VPS35-208ENST00000568612 MROH7-TTC4A0A0A0MT08 1334 aa3.3□□□□□ -1.88
VPS35-208ENST00000568612 UMODL1Q5DID0 1318 aa3.3□□□□□ -1.88
VPS35-208ENST00000568612 PASKQ96RG2 1323 aa3.3□□□□□ -1.88
VPS35-208ENST00000568612 CYP3A7-CYP3A51PA0A087WV96 503 aa3.3□□□□□ -1.88
VPS35-208ENST00000568612 A0A0G2JPF8 293 aa3.3□□□□□ -1.88
VPS35-208ENST00000568612 CTAGE9A4FU28 777 aa3.3□□□□□ -1.88
VPS35-208ENST00000568612 CAPN8A6NHC0 703 aa3.3□□□□□ -1.88
VPS35-208ENST00000568612 A8MUI8 341 aa3.3□□□□□ -1.88
VPS35-208ENST00000568612 HNRNPCL3B7ZW38 293 aa3.3□□□□□ -1.88
VPS35-208ENST00000568612 SLCO1B7G3V0H7 640 aa3.3□□□□□ -1.88
VPS35-208ENST00000568612 H0Y626 953 aa3.3□□□□□ -1.88
VPS35-208ENST00000568612 UBXN8O00124 270 aa3.3□□□□□ -1.88
VPS35-208ENST00000568612 BTN3A1O00481 513 aa3.3□□□□□ -1.88
VPS35-208ENST00000568612 FYB1O15117 783 aa3.3□□□□□ -1.88
VPS35-208ENST00000568612 POLR2DO15514 142 aaKnown RBP3.3□□□□□ -1.88
VPS35-208ENST00000568612 PI15O43692 258 aa3.3□□□□□ -1.88
VPS35-208ENST00000568612 SSX5O60225 188 aa3.3□□□□□ -1.88
VPS35-208ENST00000568612 GMNNO75496 209 aa3.3□□□□□ -1.88
VPS35-208ENST00000568612 USP1O94782 785 aa3.3□□□□□ -1.88
VPS35-208ENST00000568612 HAUS5O94927 633 aa3.3□□□□□ -1.88
VPS35-208ENST00000568612 SPDEFO95238 335 aa3.3□□□□□ -1.88
VPS35-208ENST00000568612 SNAPINO95295 136 aa3.3□□□□□ -1.88
VPS35-208ENST00000568612 PIGNO95427 931 aa3.3□□□□□ -1.88
VPS35-208ENST00000568612 IL33O95760 270 aa3.3□□□□□ -1.88
VPS35-208ENST00000568612 ASS1P00966 412 aaKnown RBP3.3□□□□□ -1.88
VPS35-208ENST00000568612 CHRNA1P02708 482 aa3.3□□□□□ -1.88
VPS35-208ENST00000568612 GCP02774 474 aa3.3□□□□□ -1.88
VPS35-208ENST00000568612 CD1AP06126 327 aa3.3□□□□□ -1.88
VPS35-208ENST00000568612 ELANEP08246 267 aa3.3□□□□□ -1.88
VPS35-208ENST00000568612 RPS17P08708 135 aaKnown RBP3.3□□□□□ -1.88
VPS35-208ENST00000568612 KRT16P08779 473 aa3.3□□□□□ -1.88
VPS35-208ENST00000568612 FAM228BP0C875 321 aa3.3□□□□□ -1.88
VPS35-208ENST00000568612 OCM2P0CE71 109 aa3.3□□□□□ -1.88
VPS35-208ENST00000568612 OCMP0CE72 109 aaPredicted RBP3.3□□□□□ -1.88
VPS35-208ENST00000568612 HNRNPCL4P0DMR1 293 aa3.3□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 56.9 ms