RNA–Protein interactions for RNA: ENST00000565688.5

CLN3-218, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 650 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-218ENST00000565688 KCNE4Q8WWG9 221 aa18.84■□□□□ 0.61
CLN3-218ENST00000565688 SLC39A7Q92504 469 aa18.84■□□□□ 0.61
CLN3-218ENST00000565688 ECHDC3Q96DC8 303 aa18.84■□□□□ 0.61
CLN3-218ENST00000565688 NAF1Q96HR8 494 aaKnown RBP18.84■□□□□ 0.61
CLN3-218ENST00000565688 WDR92Q96MX6 357 aa18.84■□□□□ 0.61
CLN3-218ENST00000565688 SLC46A1Q96NT5 459 aa18.84■□□□□ 0.61
CLN3-218ENST00000565688 ZWILCHQ9H900 591 aa18.84■□□□□ 0.61
CLN3-218ENST00000565688 MRPL47Q9HD33 250 aaKnown RBP18.84■□□□□ 0.61
CLN3-218ENST00000565688 GULP1Q9UBP9 304 aa18.84■□□□□ 0.61
CLN3-218ENST00000565688 CNOT8Q9UFF9 292 aaKnown RBP18.84■□□□□ 0.61
CLN3-218ENST00000565688 OR1A2Q9Y585 309 aa18.84■□□□□ 0.61
CLN3-218ENST00000565688 PCCBP05166 539 aa18.83■□□□□ 0.6
CLN3-218ENST00000565688 CELA2BP08218 269 aaPredicted RBP18.83■□□□□ 0.6
CLN3-218ENST00000565688 AP1S1P61966 158 aa18.83■□□□□ 0.6
CLN3-218ENST00000565688 KLHL30Q0D2K2 578 aa18.83■□□□□ 0.6
CLN3-218ENST00000565688 CYP4V2Q6ZWL3 525 aaPredicted RBP18.83■□□□□ 0.6
CLN3-218ENST00000565688 RD3Q7Z3Z2 195 aa18.83■□□□□ 0.6
CLN3-218ENST00000565688 ARL14Q8N4G2 192 aa18.83■□□□□ 0.6
CLN3-218ENST00000565688 NPWQ8N729 165 aa18.83■□□□□ 0.6
CLN3-218ENST00000565688 PCDH19Q8TAB3 1148 aa18.83■□□□□ 0.6
CLN3-218ENST00000565688 ZNF653Q96CK0 615 aa18.83■□□□□ 0.6
CLN3-218ENST00000565688 CCDC97Q96F63 343 aaPredicted RBP18.83■□□□□ 0.6
CLN3-218ENST00000565688 ZNF599Q96NL3 588 aa18.83■□□□□ 0.6
CLN3-218ENST00000565688 PSKH2Q96QS6 385 aa18.83■□□□□ 0.6
CLN3-218ENST00000565688 SEPT3Q9UH03 358 aa18.83■□□□□ 0.6
CLN3-218ENST00000565688 GPR34Q9UPC5 381 aa18.83■□□□□ 0.6
CLN3-218ENST00000565688 DGKBQ9Y6T7 804 aa18.83■□□□□ 0.6
CLN3-218ENST00000565688 HELZ2Q9BYK8 2649 aaKnown RBP18.83■□□□□ 0.6
CLN3-218ENST00000565688 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP18.82■□□□□ 0.6
CLN3-218ENST00000565688 CACNB4O00305 520 aaPredicted RBP18.82■□□□□ 0.6
CLN3-218ENST00000565688 LRCH4O75427 683 aa18.82■□□□□ 0.6
CLN3-218ENST00000565688 RECQL5O94762 991 aaPredicted RBP18.82■□□□□ 0.6
CLN3-218ENST00000565688 TNFP01375 233 aa18.82■□□□□ 0.6
CLN3-218ENST00000565688 HOXC4P09017 264 aaPredicted RBP18.82■□□□□ 0.6
CLN3-218ENST00000565688 ELFN1P0C7U0 828 aa18.82■□□□□ 0.6
CLN3-218ENST00000565688 KELP23276 732 aa18.82■□□□□ 0.6
CLN3-218ENST00000565688 PCK1P35558 622 aa18.82■□□□□ 0.6
CLN3-218ENST00000565688 SCNN1BP51168 640 aa18.82■□□□□ 0.6
CLN3-218ENST00000565688 C19orf57Q0VDD7 668 aa18.82■□□□□ 0.6
CLN3-218ENST00000565688 DPYSQ14117 519 aa18.82■□□□□ 0.6
CLN3-218ENST00000565688 TMCO4Q5TGY1 634 aa18.82■□□□□ 0.6
CLN3-218ENST00000565688 LIPIQ6XZB0 460 aa18.82■□□□□ 0.6
CLN3-218ENST00000565688 DPPA4Q7L190 304 aa18.82■□□□□ 0.6
CLN3-218ENST00000565688 KYQ8NBH2 561 aa18.82■□□□□ 0.6
CLN3-218ENST00000565688 WDR36Q8NI36 951 aaKnown RBP18.82■□□□□ 0.6
CLN3-218ENST00000565688 RBM15Q96T37 977 aaKnown RBP eCLIP18.82■□□□□ 0.6
CLN3-218ENST00000565688 TRIM7Q9C029 511 aa18.82■□□□□ 0.6
CLN3-218ENST00000565688 CWC15Q9P013 229 aaKnown RBP18.82■□□□□ 0.6
CLN3-218ENST00000565688 SIRPGQ9P1W8 387 aa18.82■□□□□ 0.6
CLN3-218ENST00000565688 SHROOM3Q8TF72 1996 aa18.82■□□□□ 0.6
CLN3-218ENST00000565688 RP1P56715 2156 aa18.82■□□□□ 0.6
CLN3-218ENST00000565688 COL27A1Q8IZC6 1860 aaPredicted RBP18.82■□□□□ 0.6
CLN3-218ENST00000565688 LRRK1Q38SD2 2015 aa18.81■□□□□ 0.6
CLN3-218ENST00000565688 ATMQ13315 3056 aa18.81■□□□□ 0.6
CLN3-218ENST00000565688 CCDC187A0A096LP49 1063 aa18.81■□□□□ 0.6
CLN3-218ENST00000565688 A0A1W2PNU3 283 aaPredicted RBP18.81■□□□□ 0.6
CLN3-218ENST00000565688 A0A1W2PQ67 120 aa18.81■□□□□ 0.6
CLN3-218ENST00000565688 H3BRJ5 948 aa18.81■□□□□ 0.6
CLN3-218ENST00000565688 TMX2-CTNND1H3BSU7 103 aa18.81■□□□□ 0.6
CLN3-218ENST00000565688 DDX3XO00571 662 aaKnown RBP eCLIP18.81■□□□□ 0.63e-8■■■□□ 15.1
CLN3-218ENST00000565688 NTN3O00634 580 aaPredicted RBP18.81■□□□□ 0.6
CLN3-218ENST00000565688 KLK10O43240 276 aa18.81■□□□□ 0.6
CLN3-218ENST00000565688 PRKCGP05129 697 aa18.81■□□□□ 0.6
CLN3-218ENST00000565688 HSPA9P38646 679 aaKnown RBP18.81■□□□□ 0.6
CLN3-218ENST00000565688 KIAA1024LP59773 190 aa18.81■□□□□ 0.6
CLN3-218ENST00000565688 RALGDSQ12967 914 aa18.81■□□□□ 0.6
CLN3-218ENST00000565688 LBRQ14739 615 aaKnown RBP18.81■□□□□ 0.6
CLN3-218ENST00000565688 ARHGAP36Q6ZRI8 547 aa18.81■□□□□ 0.6
CLN3-218ENST00000565688 OR56A4Q8NGH8 313 aa18.81■□□□□ 0.6
CLN3-218ENST00000565688 SPOCK2Q92563 424 aa18.81■□□□□ 0.6
CLN3-218ENST00000565688 SYNDIG1Q9H7V2 258 aa18.81■□□□□ 0.6
CLN3-218ENST00000565688 TMEM63CQ9P1W3 806 aa18.81■□□□□ 0.6
CLN3-218ENST00000565688 A0A1B0GTH6 734 aa18.8■□□□□ 0.6
CLN3-218ENST00000565688 TRAFD1O14545 582 aaPredicted RBP18.8■□□□□ 0.6
CLN3-218ENST00000565688 TNFRSF10CO14798 259 aa18.8■□□□□ 0.6
CLN3-218ENST00000565688 NFKBIAP25963 317 aa18.8■□□□□ 0.6
CLN3-218ENST00000565688 ARL4AP40617 200 aa18.8■□□□□ 0.6
CLN3-218ENST00000565688 ZNF235Q14590 738 aa18.8■□□□□ 0.6
CLN3-218ENST00000565688 DPYSL2Q16555 572 aa18.8■□□□□ 0.6
CLN3-218ENST00000565688 BOLA3Q53S33 107 aa18.8■□□□□ 0.6
CLN3-218ENST00000565688 E4F1Q66K89 784 aaPredicted RBP18.8■□□□□ 0.6
CLN3-218ENST00000565688 PLA2G15Q8NCC3 412 aa18.8■□□□□ 0.6
CLN3-218ENST00000565688 FUBP1Q96AE4 644 aaKnown RBP18.8■□□□□ 0.6
CLN3-218ENST00000565688 CCDC74AQ96AQ1 378 aa18.8■□□□□ 0.6
CLN3-218ENST00000565688 LIN37Q96GY3 246 aaPredicted RBP18.8■□□□□ 0.6
CLN3-218ENST00000565688 PRR11Q96HE9 360 aaPredicted RBP18.8■□□□□ 0.6
CLN3-218ENST00000565688 GFM1Q96RP9 751 aaKnown RBP18.8■□□□□ 0.6
CLN3-218ENST00000565688 ISCUQ9H1K1 167 aa18.8■□□□□ 0.6
CLN3-218ENST00000565688 CDRT15L2A8MXV6 281 aa18.79■□□□□ 0.6
CLN3-218ENST00000565688 ERVH48-1M5A8F1 160 aa18.79■□□□□ 0.6
CLN3-218ENST00000565688 PDE2AO00408 941 aaPredicted RBP18.79■□□□□ 0.6
CLN3-218ENST00000565688 SOCS5O75159 536 aa18.79■□□□□ 0.6
CLN3-218ENST00000565688 TRIM23P36406 574 aa18.79■□□□□ 0.6
CLN3-218ENST00000565688 ZNF165P49910 485 aa18.79■□□□□ 0.6
CLN3-218ENST00000565688 PDX1P52945 283 aa18.79■□□□□ 0.6
CLN3-218ENST00000565688 SKOR1P84550 965 aa18.79■□□□□ 0.6
CLN3-218ENST00000565688 RHDQ02161 417 aa18.79■□□□□ 0.6
CLN3-218ENST00000565688 SLC10A7Q0GE19 358 aa18.79■□□□□ 0.6
CLN3-218ENST00000565688 EIF3IQ13347 325 aaKnown RBP18.79■□□□□ 0.6
CLN3-218ENST00000565688 TCEA2Q15560 299 aa18.79■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms