RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 GABRDO14764 452 aa13.26□□□□□ -0.29
CLN3-210ENST00000563874 ANXA9O76027 345 aa13.26□□□□□ -0.29
CLN3-210ENST00000563874 PFKPQ01813 784 aa13.26□□□□□ -0.29
CLN3-210ENST00000563874 POU4F1Q01851 419 aa13.26□□□□□ -0.29
CLN3-210ENST00000563874 FOXD4Q12950 439 aaPredicted RBP13.26□□□□□ -0.29
CLN3-210ENST00000563874 GEN1Q17RS7 908 aa13.26□□□□□ -0.29
CLN3-210ENST00000563874 VPS26BQ4G0F5 336 aa13.26□□□□□ -0.29
CLN3-210ENST00000563874 TBCELQ5QJ74 424 aa13.26□□□□□ -0.29
CLN3-210ENST00000563874 GPR158Q5T848 1215 aa13.26□□□□□ -0.29
CLN3-210ENST00000563874 AGAP9Q5VTM2 703 aa13.26□□□□□ -0.29
CLN3-210ENST00000563874 BHLHA9Q7RTU4 235 aa13.26□□□□□ -0.29
CLN3-210ENST00000563874 AFAP1L2Q8N4X5 818 aa13.26□□□□□ -0.29
CLN3-210ENST00000563874 FCRL5Q96RD9 977 aa13.26□□□□□ -0.29
CLN3-210ENST00000563874 RANBP9Q96S59 729 aa13.26□□□□□ -0.29
CLN3-210ENST00000563874 UPF3AQ9H1J1 476 aaKnown RBP13.26□□□□□ -0.29
CLN3-210ENST00000563874 TREX1Q9NSU2 369 aa13.26□□□□□ -0.29
CLN3-210ENST00000563874 SMOXQ9NWM0 555 aa13.26□□□□□ -0.29
CLN3-210ENST00000563874 RRN3Q9NYV6 651 aa13.26□□□□□ -0.29
CLN3-210ENST00000563874 CDC14AQ9UNH5 594 aa13.26□□□□□ -0.29
CLN3-210ENST00000563874 FAF1Q9UNN5 650 aaPredicted RBP13.26□□□□□ -0.29
CLN3-210ENST00000563874 TDRKHQ9Y2W6 561 aaKnown RBP13.26□□□□□ -0.29
CLN3-210ENST00000563874 TTC24A2A3L6 582 aaPredicted RBP13.26□□□□□ -0.29
CLN3-210ENST00000563874 AP3B1O00203 1094 aa13.26□□□□□ -0.29
CLN3-210ENST00000563874 MSI1O43347 362 aaKnown RBP13.26□□□□□ -0.29
CLN3-210ENST00000563874 MAFKO60675 156 aa13.26□□□□□ -0.29
CLN3-210ENST00000563874 LTA4HP09960 611 aaKnown RBP13.26□□□□□ -0.29
CLN3-210ENST00000563874 ENTPD1P49961 510 aa13.26□□□□□ -0.29
CLN3-210ENST00000563874 CTBSQ01459 385 aa13.26□□□□□ -0.29
CLN3-210ENST00000563874 TRAP1Q12931 704 aaKnown RBP13.26□□□□□ -0.29
CLN3-210ENST00000563874 PAN2Q504Q3 1202 aaKnown RBP13.26□□□□□ -0.29
CLN3-210ENST00000563874 DCLRE1AQ6PJP8 1040 aa13.26□□□□□ -0.29
CLN3-210ENST00000563874 ANKRD13AQ8IZ07 590 aa13.26□□□□□ -0.29
CLN3-210ENST00000563874 OR2T34Q8NGX1 318 aa13.26□□□□□ -0.29
CLN3-210ENST00000563874 OR2T3Q8NH03 318 aa13.26□□□□□ -0.29
CLN3-210ENST00000563874 MRGPRX2Q96LB1 330 aa13.26□□□□□ -0.29
CLN3-210ENST00000563874 ANKRD60Q9BZ19 345 aa13.26□□□□□ -0.29
CLN3-210ENST00000563874 KATNBL1Q9H079 304 aa13.26□□□□□ -0.29
CLN3-210ENST00000563874 TSPYL2Q9H2G4 693 aaPredicted RBP13.26□□□□□ -0.29
CLN3-210ENST00000563874 GSTO2Q9H4Y5 243 aa13.26□□□□□ -0.29
CLN3-210ENST00000563874 IPO11Q9UI26 975 aaKnown RBP13.26□□□□□ -0.29
CLN3-210ENST00000563874 SARDHQ9UL12 918 aa13.26□□□□□ -0.29
CLN3-210ENST00000563874 OR51F1A6NGY5 319 aa13.26□□□□□ -0.29
CLN3-210ENST00000563874 LRRC14BA6NHZ5 514 aa13.26□□□□□ -0.29
CLN3-210ENST00000563874 NME4O00746 187 aa13.26□□□□□ -0.29
CLN3-210ENST00000563874 DYNC1LI2O43237 492 aaPredicted RBP13.26□□□□□ -0.29
CLN3-210ENST00000563874 STAMBPO95630 424 aa13.26□□□□□ -0.29
CLN3-210ENST00000563874 MOCS2O96007 188 aaPredicted RBP13.26□□□□□ -0.29
CLN3-210ENST00000563874 SLC4A1P02730 911 aa13.26□□□□□ -0.29
CLN3-210ENST00000563874 PAMP19021 973 aa13.26□□□□□ -0.29
CLN3-210ENST00000563874 KPNA2P52292 529 aaKnown RBP13.26□□□□□ -0.29
CLN3-210ENST00000563874 MAXP61244 160 aa13.26□□□□□ -0.29
CLN3-210ENST00000563874 PM20D1Q6GTS8 502 aa13.26□□□□□ -0.29
CLN3-210ENST00000563874 TTC33Q6PID6 262 aaPredicted RBP13.26□□□□□ -0.29
CLN3-210ENST00000563874 SHCBP1Q8NEM2 672 aa13.26□□□□□ -0.29
CLN3-210ENST00000563874 OR52K2Q8NGK3 314 aa13.26□□□□□ -0.29
CLN3-210ENST00000563874 DQX1Q8TE96 717 aaKnown RBP13.26□□□□□ -0.29
CLN3-210ENST00000563874 STON2Q8WXE9 905 aa13.26□□□□□ -0.29
CLN3-210ENST00000563874 TFAP2CQ92754 450 aa13.26□□□□□ -0.29
CLN3-210ENST00000563874 TOP1MTQ969P6 601 aa13.26□□□□□ -0.29
CLN3-210ENST00000563874 MPP6Q9NZW5 540 aa13.26□□□□□ -0.29
CLN3-210ENST00000563874 RNF103-CHMP3A0A140T963 221 aa13.25□□□□□ -0.29
CLN3-210ENST00000563874 H0YJX3 145 aa13.25□□□□□ -0.29
CLN3-210ENST00000563874 F9P00740 461 aa13.25□□□□□ -0.29
CLN3-210ENST00000563874 FBXO48Q5FWF7 155 aa13.25□□□□□ -0.29
CLN3-210ENST00000563874 TMEM207Q6UWW9 146 aa13.25□□□□□ -0.29
CLN3-210ENST00000563874 IFNEQ86WN2 208 aa13.25□□□□□ -0.29
CLN3-210ENST00000563874 OR6P1Q8NGX9 317 aa13.25□□□□□ -0.29
CLN3-210ENST00000563874 SCAMP5Q8TAC9 235 aa13.25□□□□□ -0.29
CLN3-210ENST00000563874 SLC16A10Q8TF71 515 aa13.25□□□□□ -0.29
CLN3-210ENST00000563874 EMID1Q96A84 441 aaPredicted RBP13.25□□□□□ -0.29
CLN3-210ENST00000563874 PGAP3Q96FM1 320 aaPredicted RBP13.25□□□□□ -0.29
CLN3-210ENST00000563874 CRYL1Q9Y2S2 319 aa13.25□□□□□ -0.29
CLN3-210ENST00000563874 LTBP3Q9NS15 1303 aa13.25□□□□□ -0.29
CLN3-210ENST00000563874 A0A0J9YYE9 177 aa13.25□□□□□ -0.29
CLN3-210ENST00000563874 PSMD3O43242 534 aa13.25□□□□□ -0.29
CLN3-210ENST00000563874 TREHO43280 583 aa13.25□□□□□ -0.29
CLN3-210ENST00000563874 CACNG3O60359 315 aa13.25□□□□□ -0.29
CLN3-210ENST00000563874 SIX3O95343 332 aaPredicted RBP13.25□□□□□ -0.29
CLN3-210ENST00000563874 HSPA8P11142 646 aaKnown RBP13.25□□□□□ -0.29
CLN3-210ENST00000563874 BDNFP23560 247 aa13.25□□□□□ -0.29
CLN3-210ENST00000563874 CCNCP24863 283 aa13.25□□□□□ -0.29
CLN3-210ENST00000563874 OXTRP30559 389 aa13.25□□□□□ -0.29
CLN3-210ENST00000563874 ADRA1AP35348 466 aa13.25□□□□□ -0.29
CLN3-210ENST00000563874 CLCN2P51788 898 aa13.25□□□□□ -0.29
CLN3-210ENST00000563874 CLCNKBP51801 687 aa13.25□□□□□ -0.29
CLN3-210ENST00000563874 STX1BP61266 288 aa13.25□□□□□ -0.29
CLN3-210ENST00000563874 C16orf72Q14CZ0 275 aa13.25□□□□□ -0.29
CLN3-210ENST00000563874 PRAMEF19Q5SWL8 479 aa13.25□□□□□ -0.29
CLN3-210ENST00000563874 HECTD2Q5U5R9 776 aa13.25□□□□□ -0.29
CLN3-210ENST00000563874 PPP4R4Q6NUP7 873 aa13.25□□□□□ -0.29
CLN3-210ENST00000563874 LARP4Q71RC2 724 aaKnown RBP eCLIP13.25□□□□□ -0.291e-6■□□□□ 8.2
CLN3-210ENST00000563874 ZBTB46Q86UZ6 589 aa13.25□□□□□ -0.29
CLN3-210ENST00000563874 EPHX4Q8IUS5 362 aa13.25□□□□□ -0.29
CLN3-210ENST00000563874 OFCC1Q8IZS5 231 aa13.25□□□□□ -0.29
CLN3-210ENST00000563874 GPC2Q8N158 579 aa13.25□□□□□ -0.29
CLN3-210ENST00000563874 C3orf58Q8NDZ4 430 aa13.25□□□□□ -0.29
CLN3-210ENST00000563874 CYGBQ8WWM9 190 aa13.25□□□□□ -0.29
CLN3-210ENST00000563874 C19orf60Q96EN9 201 aa13.25□□□□□ -0.29
CLN3-210ENST00000563874 FAR2Q96K12 515 aa13.25□□□□□ -0.29
CLN3-210ENST00000563874 TCF12Q99081 682 aa13.25□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms