RNA–Protein interactions for RNA: ENST00000562754.1

VPS4A-202, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 2

Gene VPS4A, Length 633 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-202ENST00000562754 SARNPP82979 210 aaKnown RBP16.66■□□□□ 0.26
VPS4A-202ENST00000562754 HIF1AQ16665 826 aa16.66■□□□□ 0.26
VPS4A-202ENST00000562754 LRRK1Q38SD2 2015 aa16.66■□□□□ 0.26
VPS4A-202ENST00000562754 MAMSTRQ6ZN01 415 aa16.66■□□□□ 0.26
VPS4A-202ENST00000562754 RASSF3Q86WH2 238 aa16.66■□□□□ 0.26
VPS4A-202ENST00000562754 MPP5Q8N3R9 675 aa16.66■□□□□ 0.26
VPS4A-202ENST00000562754 HDDC3Q8N4P3 179 aa16.66■□□□□ 0.26
VPS4A-202ENST00000562754 GPR161Q8N6U8 529 aaKnown RBP16.66■□□□□ 0.26
VPS4A-202ENST00000562754 PBXIP1Q96AQ6 731 aa16.66■□□□□ 0.26
VPS4A-202ENST00000562754 FRMD8Q9BZ67 464 aaPredicted RBP16.66■□□□□ 0.26
VPS4A-202ENST00000562754 SYBUQ9NX95 663 aa16.66■□□□□ 0.26
VPS4A-202ENST00000562754 B4GALT6Q9UBX8 382 aa16.66■□□□□ 0.26
VPS4A-202ENST00000562754 EBF1Q9UH73 591 aa16.66■□□□□ 0.26
VPS4A-202ENST00000562754 GGT7Q9UJ14 662 aa16.66■□□□□ 0.26
VPS4A-202ENST00000562754 KMT2EQ8IZD2 1858 aa16.65■□□□□ 0.26
VPS4A-202ENST00000562754 AREL1O15033 823 aa16.65■□□□□ 0.26
VPS4A-202ENST00000562754 RNASEH2AO75792 299 aaKnown RBP16.65■□□□□ 0.26
VPS4A-202ENST00000562754 APBB3O95704 486 aa16.65■□□□□ 0.26
VPS4A-202ENST00000562754 LHCGRP22888 699 aa16.65■□□□□ 0.26
VPS4A-202ENST00000562754 HNF1BP35680 557 aa16.65■□□□□ 0.26
VPS4A-202ENST00000562754 MMP12P39900 470 aa16.65■□□□□ 0.26
VPS4A-202ENST00000562754 CXCL12P48061 93 aa16.65■□□□□ 0.26
VPS4A-202ENST00000562754 CCR3P51677 355 aa16.65■□□□□ 0.26
VPS4A-202ENST00000562754 ARL4CP56559 192 aa16.65■□□□□ 0.26
VPS4A-202ENST00000562754 TAS2R38P59533 333 aa16.65■□□□□ 0.26
VPS4A-202ENST00000562754 CRADDP78560 199 aa16.65■□□□□ 0.26
VPS4A-202ENST00000562754 DHX9Q08211 1270 aaKnown RBP16.65■□□□□ 0.26
VPS4A-202ENST00000562754 RALGDSQ12967 914 aa16.65■□□□□ 0.26
VPS4A-202ENST00000562754 POU6F1Q14863 301 aa16.65■□□□□ 0.26
VPS4A-202ENST00000562754 TTC31Q49AM3 519 aaPredicted RBP16.65■□□□□ 0.26
VPS4A-202ENST00000562754 TMEM31Q5JXX7 168 aa16.65■□□□□ 0.26
VPS4A-202ENST00000562754 WDR93Q6P2C0 686 aa16.65■□□□□ 0.26
VPS4A-202ENST00000562754 FBXL19Q6PCT2 694 aa16.65■□□□□ 0.26
VPS4A-202ENST00000562754 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP16.65■□□□□ 0.26
VPS4A-202ENST00000562754 USP45Q70EL2 814 aa16.65■□□□□ 0.26
VPS4A-202ENST00000562754 DPPA4Q7L190 304 aa16.65■□□□□ 0.26
VPS4A-202ENST00000562754 TTC7BQ86TV6 843 aa16.65■□□□□ 0.26
VPS4A-202ENST00000562754 TSPAN33Q86UF1 283 aa16.65■□□□□ 0.26
VPS4A-202ENST00000562754 BLOC1S5Q8TDH9 187 aa16.65■□□□□ 0.26
VPS4A-202ENST00000562754 SCRN2Q96FV2 425 aa16.65■□□□□ 0.26
VPS4A-202ENST00000562754 LYSMD1Q96S90 227 aa16.65■□□□□ 0.26
VPS4A-202ENST00000562754 COL25A1Q9BXS0 654 aaPredicted RBP16.65■□□□□ 0.26
VPS4A-202ENST00000562754 PARD6BQ9BYG5 372 aa16.65■□□□□ 0.26
VPS4A-202ENST00000562754 SPATA6Q9NWH7 488 aaPredicted RBP16.65■□□□□ 0.26
VPS4A-202ENST00000562754 FBXL12Q9NXK8 326 aa16.65■□□□□ 0.26
VPS4A-202ENST00000562754 USP36Q9P275 1121 aaKnown RBP16.65■□□□□ 0.26
VPS4A-202ENST00000562754 BCCIPQ9P287 314 aaKnown RBP eCLIP16.65■□□□□ 0.26
VPS4A-202ENST00000562754 SCML1Q9UN30 329 aa16.65■□□□□ 0.26
VPS4A-202ENST00000562754 ZNF711Q9Y462 761 aa16.65■□□□□ 0.26
VPS4A-202ENST00000562754 EML5Q05BV3 1969 aa16.65■□□□□ 0.26
VPS4A-202ENST00000562754 E7ESA3 106 aa16.64■□□□□ 0.25
VPS4A-202ENST00000562754 TNFRSF10AO00220 468 aa16.64■□□□□ 0.25
VPS4A-202ENST00000562754 AURKAO14965 403 aa16.64■□□□□ 0.25
VPS4A-202ENST00000562754 ALDH1A2O94788 518 aa16.64■□□□□ 0.25
VPS4A-202ENST00000562754 XPAP23025 273 aaPredicted RBP16.64■□□□□ 0.25
VPS4A-202ENST00000562754 PXNP49023 591 aaPredicted RBP16.64■□□□□ 0.25
VPS4A-202ENST00000562754 TPMTP51580 245 aa16.64■□□□□ 0.25
VPS4A-202ENST00000562754 POLR2LP62875 67 aaKnown RBP16.64■□□□□ 0.25
VPS4A-202ENST00000562754 CBLBQ13191 982 aa16.64■□□□□ 0.25
VPS4A-202ENST00000562754 FASTKD3Q14CZ7 662 aaKnown RBP16.64■□□□□ 0.25
VPS4A-202ENST00000562754 CDKN3Q16667 212 aa16.64■□□□□ 0.25
VPS4A-202ENST00000562754 BBS9Q3SYG4 887 aa16.64■□□□□ 0.25
VPS4A-202ENST00000562754 DENND2CQ68D51 928 aa16.64■□□□□ 0.25
VPS4A-202ENST00000562754 USP30Q70CQ3 517 aa16.64■□□□□ 0.25
VPS4A-202ENST00000562754 LYSMD3Q7Z3D4 306 aa16.64■□□□□ 0.25
VPS4A-202ENST00000562754 BMP8AQ7Z5Y6 402 aa16.64■□□□□ 0.25
VPS4A-202ENST00000562754 PDIK1LQ8N165 341 aa16.64■□□□□ 0.25
VPS4A-202ENST00000562754 PGBD3Q8N328 593 aa16.64■□□□□ 0.25
VPS4A-202ENST00000562754 TTC30BQ8N4P2 665 aa16.64■□□□□ 0.25
VPS4A-202ENST00000562754 FBXL6Q8N531 539 aa16.64■□□□□ 0.25
VPS4A-202ENST00000562754 EIF1ADQ8N9N8 165 aaKnown RBP16.64■□□□□ 0.25
VPS4A-202ENST00000562754 SIGLEC10Q96LC7 697 aa16.64■□□□□ 0.25
VPS4A-202ENST00000562754 FMO2Q99518 471 aa16.64■□□□□ 0.25
VPS4A-202ENST00000562754 OMDQ99983 421 aa16.64■□□□□ 0.25
VPS4A-202ENST00000562754 TPSD1Q9BZJ3 242 aa16.64■□□□□ 0.25
VPS4A-202ENST00000562754 FOXP3Q9BZS1 431 aa16.64■□□□□ 0.25
VPS4A-202ENST00000562754 MAGEE1Q9HCI5 957 aa16.64■□□□□ 0.25
VPS4A-202ENST00000562754 PRMT8Q9NR22 394 aaPredicted RBP16.64■□□□□ 0.25
VPS4A-202ENST00000562754 BFARQ9NZS9 450 aa16.64■□□□□ 0.25
VPS4A-202ENST00000562754 RAB21Q9UL25 225 aa16.64■□□□□ 0.25
VPS4A-202ENST00000562754 FADS3Q9Y5Q0 445 aa16.64■□□□□ 0.25
VPS4A-202ENST00000562754 PLXND1Q9Y4D7 1925 aa16.64■□□□□ 0.25
VPS4A-202ENST00000562754 FAM86C2PA6NEL3 165 aa16.63■□□□□ 0.25
VPS4A-202ENST00000562754 A8MX80 341 aa16.63■□□□□ 0.25
VPS4A-202ENST00000562754 AP3B1O00203 1094 aa16.63■□□□□ 0.25
VPS4A-202ENST00000562754 IGLV3-19P01714 112 aa16.63■□□□□ 0.25
VPS4A-202ENST00000562754 FAM153BP0C7A2 387 aa16.63■□□□□ 0.25
VPS4A-202ENST00000562754 ACADMP11310 421 aa16.63■□□□□ 0.25
VPS4A-202ENST00000562754 VIPR1P32241 457 aa16.63■□□□□ 0.25
VPS4A-202ENST00000562754 NPY2RP49146 381 aa16.63■□□□□ 0.25
VPS4A-202ENST00000562754 SUOXP51687 545 aa16.63■□□□□ 0.25
VPS4A-202ENST00000562754 FAM193AP78312 1265 aa16.63■□□□□ 0.25
VPS4A-202ENST00000562754 PDIA2Q13087 525 aaKnown RBP16.63■□□□□ 0.25
VPS4A-202ENST00000562754 SEPT6Q14141 434 aa16.63■□□□□ 0.25
VPS4A-202ENST00000562754 CNGA3Q16281 694 aa16.63■□□□□ 0.25
VPS4A-202ENST00000562754 FAM153CQ494X1 144 aa16.63■□□□□ 0.25
VPS4A-202ENST00000562754 CCDC38Q502W7 563 aa16.63■□□□□ 0.25
VPS4A-202ENST00000562754 DNAJC21Q5F1R6 531 aaKnown RBP16.63■□□□□ 0.25
VPS4A-202ENST00000562754 ERAP2Q6P179 960 aa16.63■□□□□ 0.25
VPS4A-202ENST00000562754 CRTC1Q6UUV9 634 aa16.63■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms