RNA–Protein interactions for RNA: ENST00000561026.5

SNX1-213, Transcript of sorting nexin 1, humanhuman

TSL 1 (best) BASIC

Gene SNX1, Length 1,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-213ENST00000561026 PSKH2Q96QS6 385 aa16.31■□□□□ 0.2
SNX1-213ENST00000561026 LGMNQ99538 433 aa16.31■□□□□ 0.2
SNX1-213ENST00000561026 ASCL3Q9NQ33 180 aa16.31■□□□□ 0.2
SNX1-213ENST00000561026 MYO1AQ9UBC5 1043 aa16.31■□□□□ 0.2
SNX1-213ENST00000561026 SEPT3Q9UH03 358 aa16.31■□□□□ 0.2
SNX1-213ENST00000561026 ENTPD2Q9Y5L3 495 aa16.31■□□□□ 0.2
SNX1-213ENST00000561026 MGAQ8IWI9 3026 aa16.3■□□□□ 0.2
SNX1-213ENST00000561026 A0A1W2PNU3 283 aaPredicted RBP16.3■□□□□ 0.2
SNX1-213ENST00000561026 RECQL5O94762 991 aaPredicted RBP16.3■□□□□ 0.2
SNX1-213ENST00000561026 SERPINC1P01008 464 aa16.3■□□□□ 0.2
SNX1-213ENST00000561026 PCCBP05166 539 aa16.3■□□□□ 0.2
SNX1-213ENST00000561026 IL1R2P27930 398 aa16.3■□□□□ 0.2
SNX1-213ENST00000561026 RENBPP51606 427 aa16.3■□□□□ 0.2
SNX1-213ENST00000561026 AP1S1P61966 158 aa16.3■□□□□ 0.2
SNX1-213ENST00000561026 SLC10A7Q0GE19 358 aa16.3■□□□□ 0.2
SNX1-213ENST00000561026 LBRQ14739 615 aaKnown RBP16.3■□□□□ 0.2
SNX1-213ENST00000561026 DPYSL2Q16555 572 aa16.3■□□□□ 0.2
SNX1-213ENST00000561026 BOLA3Q53S33 107 aa16.3■□□□□ 0.2
SNX1-213ENST00000561026 TMCO4Q5TGY1 634 aa16.3■□□□□ 0.2
SNX1-213ENST00000561026 IGF2-ASQ6U949 168 aa16.3■□□□□ 0.2
SNX1-213ENST00000561026 LIPIQ6XZB0 460 aa16.3■□□□□ 0.2
SNX1-213ENST00000561026 NYAP1Q6ZVC0 841 aa16.3■□□□□ 0.2
SNX1-213ENST00000561026 ARL10Q8N8L6 244 aa16.3■□□□□ 0.2
SNX1-213ENST00000561026 PLA2G15Q8NCC3 412 aa16.3■□□□□ 0.2
SNX1-213ENST00000561026 PCDH19Q8TAB3 1148 aa16.3■□□□□ 0.2
SNX1-213ENST00000561026 NSMCE3Q96MG7 304 aa16.3■□□□□ 0.2
SNX1-213ENST00000561026 WDR92Q96MX6 357 aa16.3■□□□□ 0.2
SNX1-213ENST00000561026 ZNF599Q96NL3 588 aa16.3■□□□□ 0.2
SNX1-213ENST00000561026 FCRL3Q96P31 734 aaPredicted RBP16.3■□□□□ 0.2
SNX1-213ENST00000561026 CCDC3Q9BQI4 270 aa16.3■□□□□ 0.2
SNX1-213ENST00000561026 GULP1Q9UBP9 304 aa16.3■□□□□ 0.2
SNX1-213ENST00000561026 KLQ9UEF7 1012 aa16.3■□□□□ 0.2
SNX1-213ENST00000561026 SATB2Q9UPW6 733 aa16.3■□□□□ 0.2
SNX1-213ENST00000561026 DGKBQ9Y6T7 804 aa16.3■□□□□ 0.2
SNX1-213ENST00000561026 LRRK1Q38SD2 2015 aa16.29■□□□□ 0.2
SNX1-213ENST00000561026 EIF4E1BA6NMX2 242 aaKnown RBP16.29■□□□□ 0.2
SNX1-213ENST00000561026 H3BRJ5 948 aa16.29■□□□□ 0.2
SNX1-213ENST00000561026 CASC3O15234 703 aaKnown RBP16.29■□□□□ 0.2
SNX1-213ENST00000561026 ELFN1P0C7U0 828 aa16.29■□□□□ 0.2
SNX1-213ENST00000561026 ARL4AP40617 200 aa16.29■□□□□ 0.2
SNX1-213ENST00000561026 TCEA2Q15560 299 aa16.29■□□□□ 0.2
SNX1-213ENST00000561026 SMTNL2Q2TAL5 461 aa16.29■□□□□ 0.2
SNX1-213ENST00000561026 C3orf38Q5JPI3 329 aa16.29■□□□□ 0.2
SNX1-213ENST00000561026 KCTD16Q68DU8 428 aa16.29■□□□□ 0.2
SNX1-213ENST00000561026 DPPA4Q7L190 304 aa16.29■□□□□ 0.2
SNX1-213ENST00000561026 GPR155Q7Z3F1 870 aa16.29■□□□□ 0.2
SNX1-213ENST00000561026 POLNQ7Z5Q5 900 aa16.29■□□□□ 0.2
SNX1-213ENST00000561026 GKN2Q86XP6 184 aa16.29■□□□□ 0.2
SNX1-213ENST00000561026 PAF1Q8N7H5 531 aa16.29■□□□□ 0.2
SNX1-213ENST00000561026 SPOCK2Q92563 424 aa16.29■□□□□ 0.2
SNX1-213ENST00000561026 NAF1Q96HR8 494 aaKnown RBP16.29■□□□□ 0.2
SNX1-213ENST00000561026 SLC46A1Q96NT5 459 aa16.29■□□□□ 0.2
SNX1-213ENST00000561026 FUCA2Q9BTY2 467 aa16.29■□□□□ 0.2
SNX1-213ENST00000561026 THSD1Q9NS62 852 aa16.29■□□□□ 0.2
SNX1-213ENST00000561026 SIRPGQ9P1W8 387 aa16.29■□□□□ 0.2
SNX1-213ENST00000561026 KALRNO60229 2985 aa16.29■□□□□ 0.2
SNX1-213ENST00000561026 A8MX80 341 aa16.28■□□□□ 0.2
SNX1-213ENST00000561026 NTN3O00634 580 aaPredicted RBP16.28■□□□□ 0.2
SNX1-213ENST00000561026 PEX11BO96011 259 aa16.28■□□□□ 0.2
SNX1-213ENST00000561026 TNFP01375 233 aa16.28■□□□□ 0.2
SNX1-213ENST00000561026 TCF4P15884 667 aa16.28■□□□□ 0.2
SNX1-213ENST00000561026 GM2AP17900 193 aa16.28■□□□□ 0.2
SNX1-213ENST00000561026 AMPD1P23109 780 aa16.28■□□□□ 0.2
SNX1-213ENST00000561026 RBMS1P29558 406 aaKnown RBP16.28■□□□□ 0.2
SNX1-213ENST00000561026 TRIM23P36406 574 aa16.28■□□□□ 0.2
SNX1-213ENST00000561026 PIGHQ14442 188 aaPredicted RBP16.28■□□□□ 0.2
SNX1-213ENST00000561026 HGSNATQ68CP4 663 aa16.28■□□□□ 0.2
SNX1-213ENST00000561026 TMCO3Q6UWJ1 677 aa16.28■□□□□ 0.2
SNX1-213ENST00000561026 KYQ8NBH2 561 aa16.28■□□□□ 0.2
SNX1-213ENST00000561026 FUBP1Q96AE4 644 aaKnown RBP16.28■□□□□ 0.2
SNX1-213ENST00000561026 PDXPQ96GD0 296 aa16.28■□□□□ 0.2
SNX1-213ENST00000561026 CSPG4P5Q96PW8 444 aa16.28■□□□□ 0.2
SNX1-213ENST00000561026 RBM15Q96T37 977 aaKnown RBP eCLIP16.28■□□□□ 0.2
SNX1-213ENST00000561026 ETNK2Q9NVF9 386 aa16.28■□□□□ 0.2
SNX1-213ENST00000561026 GPR34Q9UPC5 381 aa16.28■□□□□ 0.2
SNX1-213ENST00000561026 PCDHGA8Q9Y5G5 932 aa16.28■□□□□ 0.2
SNX1-213ENST00000561026 BZW2Q9Y6E2 419 aaKnown RBP16.28■□□□□ 0.2
SNX1-213ENST00000561026 COL27A1Q8IZC6 1860 aaPredicted RBP16.27■□□□□ 0.2
SNX1-213ENST00000561026 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP16.27■□□□□ 0.2
SNX1-213ENST00000561026 TTC24A2A3L6 582 aaPredicted RBP16.27■□□□□ 0.2
SNX1-213ENST00000561026 TMEM202A6NGA9 273 aa16.27■□□□□ 0.2
SNX1-213ENST00000561026 CACNB4O00305 520 aaPredicted RBP16.27■□□□□ 0.2
SNX1-213ENST00000561026 HTRA2O43464 458 aaPredicted RBP16.27■□□□□ 0.2
SNX1-213ENST00000561026 HOXC4P09017 264 aaPredicted RBP16.27■□□□□ 0.2
SNX1-213ENST00000561026 RARAP10276 462 aa16.27■□□□□ 0.2
SNX1-213ENST00000561026 CR2P20023 1033 aa16.27■□□□□ 0.2
SNX1-213ENST00000561026 HSPA9P38646 679 aaKnown RBP16.27■□□□□ 0.2
SNX1-213ENST00000561026 PDX1P52945 283 aa16.27■□□□□ 0.2
SNX1-213ENST00000561026 KIAA1024LP59773 190 aa16.27■□□□□ 0.2
SNX1-213ENST00000561026 SPIDRQ14159 915 aa16.27■□□□□ 0.2
SNX1-213ENST00000561026 OR56A4Q8NGH8 313 aa16.27■□□□□ 0.2
SNX1-213ENST00000561026 OR1E3Q8WZA6 343 aa16.27■□□□□ 0.2
SNX1-213ENST00000561026 HSPH1Q92598 858 aa16.27■□□□□ 0.2
SNX1-213ENST00000561026 SYN2Q92777 582 aaPredicted RBP16.27■□□□□ 0.2
SNX1-213ENST00000561026 PRR11Q96HE9 360 aaPredicted RBP16.27■□□□□ 0.2
SNX1-213ENST00000561026 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP16.27■□□□□ 0.2
SNX1-213ENST00000561026 FGF22Q9HCT0 170 aa16.27■□□□□ 0.2
SNX1-213ENST00000561026 STAU2Q9NUL3 570 aaKnown RBP eCLIP16.27■□□□□ 0.2
SNX1-213ENST00000561026 B4GALT6Q9UBX8 382 aa16.27■□□□□ 0.2
SNX1-213ENST00000561026 RABGEF1Q9UJ41 708 aa16.27■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms