RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 GLMNQ92990 594 aa10.28□□□□□ -0.76
LDLR-214ENST00000560628 ECHDC3Q96DC8 303 aa10.28□□□□□ -0.76
LDLR-214ENST00000560628 CSPG4P5Q96PW8 444 aa10.28□□□□□ -0.76
LDLR-214ENST00000560628 PSKH2Q96QS6 385 aa10.28□□□□□ -0.76
LDLR-214ENST00000560628 NUP85Q9BW27 656 aa10.28□□□□□ -0.76
LDLR-214ENST00000560628 BOCQ9BWV1 1114 aa10.28□□□□□ -0.76
LDLR-214ENST00000560628 SYNDIG1Q9H7V2 258 aa10.28□□□□□ -0.76
LDLR-214ENST00000560628 NCKIPSDQ9NZQ3 722 aa10.28□□□□□ -0.76
LDLR-214ENST00000560628 PADI4Q9UM07 663 aa10.28□□□□□ -0.76
LDLR-214ENST00000560628 PCDHGC4Q9Y5F7 938 aa10.28□□□□□ -0.76
LDLR-214ENST00000560628 BZW2Q9Y6E2 419 aaKnown RBP10.28□□□□□ -0.76
LDLR-214ENST00000560628 A0A1W2PQJ5 194 aa10.27□□□□□ -0.77
LDLR-214ENST00000560628 TMEM202A6NGA9 273 aa10.27□□□□□ -0.77
LDLR-214ENST00000560628 GOLGA6L19H0YKK7 550 aa10.27□□□□□ -0.77
LDLR-214ENST00000560628 TRAFD1O14545 582 aaPredicted RBP10.27□□□□□ -0.77
LDLR-214ENST00000560628 MAFKO60675 156 aa10.27□□□□□ -0.77
LDLR-214ENST00000560628 RASGRP1O95267 797 aa10.27□□□□□ -0.77
LDLR-214ENST00000560628 TNFP01375 233 aa10.27□□□□□ -0.77
LDLR-214ENST00000560628 SERPING1P05155 500 aa10.27□□□□□ -0.77
LDLR-214ENST00000560628 ELFN1P0C7U0 828 aa10.27□□□□□ -0.77
LDLR-214ENST00000560628 BLKP51451 505 aa10.27□□□□□ -0.77
LDLR-214ENST00000560628 MAXP61244 160 aa10.27□□□□□ -0.77
LDLR-214ENST00000560628 POLR2LP62875 67 aaKnown RBP10.27□□□□□ -0.77
LDLR-214ENST00000560628 ZBED6P86452 979 aa10.27□□□□□ -0.77
LDLR-214ENST00000560628 MMRN1Q13201 1228 aa10.27□□□□□ -0.77
LDLR-214ENST00000560628 MTM1Q13496 603 aa10.27□□□□□ -0.77
LDLR-214ENST00000560628 ZNF235Q14590 738 aa10.27□□□□□ -0.77
LDLR-214ENST00000560628 ACOX1Q15067 660 aa10.27□□□□□ -0.77
LDLR-214ENST00000560628 PTPRRQ15256 657 aa10.27□□□□□ -0.77
LDLR-214ENST00000560628 ELOCQ15369 112 aa10.27□□□□□ -0.77
LDLR-214ENST00000560628 ISXQ2M1V0 245 aa10.27□□□□□ -0.77
LDLR-214ENST00000560628 TBC1D25Q3MII6 688 aa10.27□□□□□ -0.77
LDLR-214ENST00000560628 CCDC122Q5T0U0 273 aa10.27□□□□□ -0.77
LDLR-214ENST00000560628 DENND2CQ68D51 928 aa10.27□□□□□ -0.77
LDLR-214ENST00000560628 ESRP1Q6NXG1 681 aaKnown RBP10.27□□□□□ -0.77
LDLR-214ENST00000560628 SNIP1Q8TAD8 396 aaKnown RBP10.27□□□□□ -0.77
LDLR-214ENST00000560628 SCG3Q8WXD2 468 aaKnown RBP10.27□□□□□ -0.77
LDLR-214ENST00000560628 SYN2Q92777 582 aaPredicted RBP10.27□□□□□ -0.77
LDLR-214ENST00000560628 ATXN7L3BQ96GX2 97 aa10.27□□□□□ -0.77
LDLR-214ENST00000560628 TBATAQ96M53 351 aa10.27□□□□□ -0.77
LDLR-214ENST00000560628 WDR92Q96MX6 357 aa10.27□□□□□ -0.77
LDLR-214ENST00000560628 ZNF599Q96NL3 588 aa10.27□□□□□ -0.77
LDLR-214ENST00000560628 BBC3Q96PG8 261 aaPredicted RBP10.27□□□□□ -0.77
LDLR-214ENST00000560628 NOD2Q9HC29 1040 aa10.27□□□□□ -0.77
LDLR-214ENST00000560628 PCDH18Q9HCL0 1135 aa10.27□□□□□ -0.77
LDLR-214ENST00000560628 MRPL40Q9NQ50 206 aaKnown RBP10.27□□□□□ -0.77
LDLR-214ENST00000560628 IFNKQ9P0W0 207 aa10.27□□□□□ -0.77
LDLR-214ENST00000560628 B4GALT6Q9UBX8 382 aa10.27□□□□□ -0.77
LDLR-214ENST00000560628 KLQ9UEF7 1012 aa10.27□□□□□ -0.77
LDLR-214ENST00000560628 IP6K2Q9UHH9 426 aa10.27□□□□□ -0.77
LDLR-214ENST00000560628 ANAPC7Q9UJX3 599 aa10.27□□□□□ -0.77
LDLR-214ENST00000560628 CAPN11Q9UMQ6 739 aa10.27□□□□□ -0.77
LDLR-214ENST00000560628 GPR34Q9UPC5 381 aa10.27□□□□□ -0.77
LDLR-214ENST00000560628 DSPP15924 2871 aaKnown RBP10.27□□□□□ -0.77
LDLR-214ENST00000560628 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP10.26□□□□□ -0.77
LDLR-214ENST00000560628 A0A1W2PNU3 283 aaPredicted RBP10.26□□□□□ -0.77
LDLR-214ENST00000560628 CFAP69A5D8W1 941 aa10.26□□□□□ -0.77
LDLR-214ENST00000560628 MYO1FO00160 1098 aa10.26□□□□□ -0.77
LDLR-214ENST00000560628 PEX11BO96011 259 aa10.26□□□□□ -0.77
LDLR-214ENST00000560628 CYP1A2P05177 515 aa10.26□□□□□ -0.77
LDLR-214ENST00000560628 CD48P09326 243 aa10.26□□□□□ -0.77
LDLR-214ENST00000560628 ALPIP09923 528 aa10.26□□□□□ -0.77
LDLR-214ENST00000560628 GM2AP17900 193 aa10.26□□□□□ -0.77
LDLR-214ENST00000560628 GJC1P36383 396 aa10.26□□□□□ -0.77
LDLR-214ENST00000560628 LSSP48449 732 aa10.26□□□□□ -0.77
LDLR-214ENST00000560628 CDH6P55285 790 aa10.26□□□□□ -0.77
LDLR-214ENST00000560628 AP1S1P61966 158 aa10.26□□□□□ -0.77
LDLR-214ENST00000560628 KRT81Q14533 505 aa10.26□□□□□ -0.77
LDLR-214ENST00000560628 AGERQ15109 404 aa10.26□□□□□ -0.77
LDLR-214ENST00000560628 ATP13A4Q4VNC1 1196 aa10.26□□□□□ -0.77
LDLR-214ENST00000560628 C3orf38Q5JPI3 329 aa10.26□□□□□ -0.77
LDLR-214ENST00000560628 ALKBH5Q6P6C2 394 aaKnown RBP10.26□□□□□ -0.77
LDLR-214ENST00000560628 FOXR1Q6PIV2 292 aa10.26□□□□□ -0.77
LDLR-214ENST00000560628 RBM44Q6ZP01 1051 aaKnown RBP10.26□□□□□ -0.77
LDLR-214ENST00000560628 DPPA4Q7L190 304 aa10.26□□□□□ -0.77
LDLR-214ENST00000560628 CPNE8Q86YQ8 564 aa10.26□□□□□ -0.77
LDLR-214ENST00000560628 PELI3Q8N2H9 469 aa10.26□□□□□ -0.77
LDLR-214ENST00000560628 FSTL5Q8N475 847 aaPredicted RBP10.26□□□□□ -0.77
LDLR-214ENST00000560628 ATPAF2Q8N5M1 289 aa10.26□□□□□ -0.77
LDLR-214ENST00000560628 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP10.26□□□□□ -0.77
LDLR-214ENST00000560628 KYQ8NBH2 561 aa10.26□□□□□ -0.77
LDLR-214ENST00000560628 ATL2Q8NHH9 583 aa10.26□□□□□ -0.77
LDLR-214ENST00000560628 TPCN2Q8NHX9 752 aa10.26□□□□□ -0.77
LDLR-214ENST00000560628 PCDH19Q8TAB3 1148 aa10.26□□□□□ -0.77
LDLR-214ENST00000560628 OR1E3Q8WZA6 343 aa10.26□□□□□ -0.77
LDLR-214ENST00000560628 FUBP1Q96AE4 644 aaKnown RBP10.26□□□□□ -0.77
LDLR-214ENST00000560628 PDXPQ96GD0 296 aa10.26□□□□□ -0.77
LDLR-214ENST00000560628 NUDCD1Q96RS6 583 aa10.26□□□□□ -0.77
LDLR-214ENST00000560628 CCDC3Q9BQI4 270 aa10.26□□□□□ -0.77
LDLR-214ENST00000560628 LGR4Q9BXB1 951 aa10.26□□□□□ -0.77
LDLR-214ENST00000560628 SUDS3Q9H7L9 328 aaPredicted RBP10.26□□□□□ -0.77
LDLR-214ENST00000560628 POLR1BQ9H9Y6 1135 aa10.26□□□□□ -0.77
LDLR-214ENST00000560628 MOSPD1Q9UJG1 213 aa10.26□□□□□ -0.77
LDLR-214ENST00000560628 SATB2Q9UPW6 733 aa10.26□□□□□ -0.77
LDLR-214ENST00000560628 LUC7L2Q9Y383 392 aaKnown RBP10.26□□□□□ -0.77
LDLR-214ENST00000560628 ENTPD2Q9Y5L3 495 aa10.26□□□□□ -0.77
LDLR-214ENST00000560628 CELSR3Q9NYQ7 3312 aa10.25□□□□□ -0.77
LDLR-214ENST00000560628 A0A0U1RQS6 177 aa10.25□□□□□ -0.77
LDLR-214ENST00000560628 PMS2P1A4D2B8 440 aa10.25□□□□□ -0.77
LDLR-214ENST00000560628 CACNB4O00305 520 aaPredicted RBP10.25□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms