RNA–Protein interactions for RNA: ENST00000560467.1

LDLR-212, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 928 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-212ENST00000560467 FOXP3Q9BZS1 431 aa11.92□□□□□ -0.5
LDLR-212ENST00000560467 BTBD1Q9H0C5 482 aa11.92□□□□□ -0.5
LDLR-212ENST00000560467 USP29Q9HBJ7 922 aa11.92□□□□□ -0.5
LDLR-212ENST00000560467 PRSS16Q9NQE7 514 aa11.92□□□□□ -0.5
LDLR-212ENST00000560467 UBA2Q9UBT2 640 aaPredicted RBP11.92□□□□□ -0.5
LDLR-212ENST00000560467 RSPH14Q9UHP6 348 aa11.92□□□□□ -0.5
LDLR-212ENST00000560467 GGA2Q9UJY4 613 aa11.92□□□□□ -0.5
LDLR-212ENST00000560467 AAR2Q9Y312 384 aaKnown RBP11.92□□□□□ -0.5
LDLR-212ENST00000560467 MFHAS1Q9Y4C4 1052 aa11.92□□□□□ -0.5
LDLR-212ENST00000560467 SETXQ7Z333 2677 aaKnown RBP11.91□□□□□ -0.5
LDLR-212ENST00000560467 A0A087WV48 116 aa11.91□□□□□ -0.5
LDLR-212ENST00000560467 KCNK1O00180 336 aa11.91□□□□□ -0.5
LDLR-212ENST00000560467 AP3B1O00203 1094 aa11.91□□□□□ -0.5
LDLR-212ENST00000560467 PCDHGA12O60330 932 aa11.91□□□□□ -0.5
LDLR-212ENST00000560467 MAFKO60675 156 aa11.91□□□□□ -0.5
LDLR-212ENST00000560467 ANXA9O76027 345 aa11.91□□□□□ -0.5
LDLR-212ENST00000560467 ATP5BP06576 529 aaKnown RBP11.91□□□□□ -0.5
LDLR-212ENST00000560467 C7P10643 843 aa11.91□□□□□ -0.5
LDLR-212ENST00000560467 PABPC1P11940 636 aaKnown RBP11.91□□□□□ -0.5
LDLR-212ENST00000560467 CD27P26842 260 aa11.91□□□□□ -0.5
LDLR-212ENST00000560467 RPL22P35268 128 aaKnown RBP11.91□□□□□ -0.5
LDLR-212ENST00000560467 HSPA9P38646 679 aaKnown RBP11.91□□□□□ -0.5
LDLR-212ENST00000560467 CTSKP43235 329 aa11.91□□□□□ -0.5
LDLR-212ENST00000560467 CLCN6P51797 869 aa11.91□□□□□ -0.5
LDLR-212ENST00000560467 PLTPP55058 493 aa11.91□□□□□ -0.5
LDLR-212ENST00000560467 IFI35P80217 286 aaPredicted RBP11.91□□□□□ -0.5
LDLR-212ENST00000560467 BASP1P80723 227 aaKnown RBP11.91□□□□□ -0.5
LDLR-212ENST00000560467 MRPS25P82663 173 aaKnown RBP11.91□□□□□ -0.5
LDLR-212ENST00000560467 TEX44Q53QW1 395 aa11.91□□□□□ -0.5
LDLR-212ENST00000560467 ANKRD20A2Q5SQ80 823 aa11.91□□□□□ -0.5
LDLR-212ENST00000560467 PRAMEF14Q5SWL7 426 aa11.91□□□□□ -0.5
LDLR-212ENST00000560467 ANKRD20A1Q5TYW2 823 aa11.91□□□□□ -0.5
LDLR-212ENST00000560467 ANKRD20A3Q5VUR7 823 aa11.91□□□□□ -0.5
LDLR-212ENST00000560467 IZUMO3Q5VZ72 239 aa11.91□□□□□ -0.5
LDLR-212ENST00000560467 MBLAC2Q68D91 279 aa11.91□□□□□ -0.5
LDLR-212ENST00000560467 ARHGAP12Q8IWW6 846 aa11.91□□□□□ -0.5
LDLR-212ENST00000560467 PPIL6Q8IXY8 311 aa11.91□□□□□ -0.5
LDLR-212ENST00000560467 DDX51Q8N8A6 666 aaKnown RBP eCLIP11.91□□□□□ -0.5
LDLR-212ENST00000560467 ARHGEF2Q92974 986 aaKnown RBP11.91□□□□□ -0.5
LDLR-212ENST00000560467 SLC6A18Q96N87 628 aa11.91□□□□□ -0.5
LDLR-212ENST00000560467 AGAP3Q96P47 875 aa11.91□□□□□ -0.5
LDLR-212ENST00000560467 DCBLD2Q96PD2 775 aa11.91□□□□□ -0.5
LDLR-212ENST00000560467 TRIM51Q9BSJ1 452 aa11.91□□□□□ -0.5
LDLR-212ENST00000560467 FEM1AQ9BSK4 669 aa11.91□□□□□ -0.5
LDLR-212ENST00000560467 CINPQ9BW66 212 aaPredicted RBP11.91□□□□□ -0.5
LDLR-212ENST00000560467 ANKZF1Q9H8Y5 726 aa11.91□□□□□ -0.5
LDLR-212ENST00000560467 GDF3Q9NR23 364 aa11.91□□□□□ -0.5
LDLR-212ENST00000560467 RAB6BQ9NRW1 208 aa11.91□□□□□ -0.5
LDLR-212ENST00000560467 RBM22Q9NW64 420 aaKnown RBP eCLIP11.91□□□□□ -0.54e-7■■■■■ 32.5
LDLR-212ENST00000560467 FTSJ1Q9UET6 329 aa11.91□□□□□ -0.5
LDLR-212ENST00000560467 SERGEFQ9UGK8 458 aa11.91□□□□□ -0.5
LDLR-212ENST00000560467 SEPT3Q9UH03 358 aa11.91□□□□□ -0.5
LDLR-212ENST00000560467 PLA2G4CQ9UP65 541 aa11.91□□□□□ -0.5
LDLR-212ENST00000560467 NEU3Q9UQ49 428 aa11.91□□□□□ -0.5
LDLR-212ENST00000560467 TTLL3Q9Y4R7 772 aa11.91□□□□□ -0.5
LDLR-212ENST00000560467 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP11.9□□□□□ -0.5
LDLR-212ENST00000560467 CXorf51AA0A1B0GTR3 108 aa11.9□□□□□ -0.5
LDLR-212ENST00000560467 EIF4E1BA6NMX2 242 aaKnown RBP11.9□□□□□ -0.5
LDLR-212ENST00000560467 ERI2A8K979 691 aaKnown RBP11.9□□□□□ -0.5
LDLR-212ENST00000560467 PLK4O00444 970 aa11.9□□□□□ -0.5
LDLR-212ENST00000560467 DYNC1I1O14576 645 aa11.9□□□□□ -0.5
LDLR-212ENST00000560467 PRAMEF11O60813 436 aa11.9□□□□□ -0.5
LDLR-212ENST00000560467 DNTTP04053 509 aa11.9□□□□□ -0.5
LDLR-212ENST00000560467 PRB1P04280 392 aa11.9□□□□□ -0.5
LDLR-212ENST00000560467 IGHV4-34P06331 123 aa11.9□□□□□ -0.5
LDLR-212ENST00000560467 DLDP09622 509 aaKnown RBP11.9□□□□□ -0.5
LDLR-212ENST00000560467 POLR2EP19388 210 aaKnown RBP11.9□□□□□ -0.5
LDLR-212ENST00000560467 TNFRSF8P28908 595 aa11.9□□□□□ -0.5
LDLR-212ENST00000560467 CD70P32970 193 aa11.9□□□□□ -0.5
LDLR-212ENST00000560467 MMP13P45452 471 aa11.9□□□□□ -0.5
LDLR-212ENST00000560467 CKAP5Q14008 2032 aa11.9□□□□□ -0.5
LDLR-212ENST00000560467 MORF4L2Q15014 288 aa11.9□□□□□ -0.5
LDLR-212ENST00000560467 TTC31Q49AM3 519 aaPredicted RBP11.9□□□□□ -0.5
LDLR-212ENST00000560467 ZNF776Q68DI1 518 aaPredicted RBP11.9□□□□□ -0.5
LDLR-212ENST00000560467 DUPD1Q68J44 220 aa11.9□□□□□ -0.5
LDLR-212ENST00000560467 B4GALNT4Q76KP1 1039 aa11.9□□□□□ -0.5
LDLR-212ENST00000560467 HOOK3Q86VS8 718 aa11.9□□□□□ -0.5
LDLR-212ENST00000560467 GATAD2AQ86YP4 633 aa11.9□□□□□ -0.5
LDLR-212ENST00000560467 AHI1Q8N157 1196 aa11.9□□□□□ -0.5
LDLR-212ENST00000560467 PDCD7Q8N8D1 485 aaKnown RBP11.9□□□□□ -0.5
LDLR-212ENST00000560467 CCDC110Q8TBZ0 833 aa11.9□□□□□ -0.5
LDLR-212ENST00000560467 GANCQ8TET4 914 aa11.9□□□□□ -0.5
LDLR-212ENST00000560467 TEKT5Q96M29 485 aa11.9□□□□□ -0.5
LDLR-212ENST00000560467 C10orf88Q9H8K7 445 aa11.9□□□□□ -0.5
LDLR-212ENST00000560467 NDFIP2Q9NV92 336 aa11.9□□□□□ -0.5
LDLR-212ENST00000560467 DMGDHQ9UI17 866 aaKnown RBP11.9□□□□□ -0.5
LDLR-212ENST00000560467 SLC25A13Q9UJS0 675 aa11.9□□□□□ -0.5
LDLR-212ENST00000560467 A0A0D9SEW6 157 aa11.89□□□□□ -0.51
LDLR-212ENST00000560467 CCDC151A5D8V7 595 aa11.89□□□□□ -0.51
LDLR-212ENST00000560467 FAM47DPA6NHR8 397 aa11.89□□□□□ -0.51
LDLR-212ENST00000560467 ZSCAN5DPP0CG00 497 aa11.89□□□□□ -0.51
LDLR-212ENST00000560467 CA4P22748 312 aa11.89□□□□□ -0.51
LDLR-212ENST00000560467 PTPN3P26045 913 aa11.89□□□□□ -0.51
LDLR-212ENST00000560467 ITPKBP27987 946 aa11.89□□□□□ -0.51
LDLR-212ENST00000560467 ACVRL1P37023 503 aa11.89□□□□□ -0.51
LDLR-212ENST00000560467 CSKP41240 450 aa11.89□□□□□ -0.51
LDLR-212ENST00000560467 IRAK1P51617 712 aa11.89□□□□□ -0.51
LDLR-212ENST00000560467 PLK1P53350 603 aa11.89□□□□□ -0.51
LDLR-212ENST00000560467 C21orf59P57076 290 aa11.89□□□□□ -0.51
LDLR-212ENST00000560467 ST8SIA6P61647 398 aa11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms