RNA–Protein interactions for RNA: ENST00000559898.5

HDDC3-205, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,024 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-205ENST00000559898 ASTE1Q2TB18 679 aaPredicted RBP17.82■□□□□ 0.44
HDDC3-205ENST00000559898 CFAP58Q5T655 872 aa17.82■□□□□ 0.44
HDDC3-205ENST00000559898 TMCO4Q5TGY1 634 aa17.82■□□□□ 0.44
HDDC3-205ENST00000559898 ZCCHC8Q6NZY4 707 aaKnown RBP17.82■□□□□ 0.44
HDDC3-205ENST00000559898 ENPP7Q6UWV6 458 aa17.82■□□□□ 0.44
HDDC3-205ENST00000559898 RFLNAQ6ZTI6 216 aa17.82■□□□□ 0.44
HDDC3-205ENST00000559898 DPPA4Q7L190 304 aa17.82■□□□□ 0.44
HDDC3-205ENST00000559898 ZNF564Q8TBZ8 553 aaPredicted RBP17.82■□□□□ 0.44
HDDC3-205ENST00000559898 PTCD2Q8WV60 388 aaKnown RBP17.82■□□□□ 0.44
HDDC3-205ENST00000559898 TEKT4Q8WW24 435 aa17.82■□□□□ 0.44
HDDC3-205ENST00000559898 OR1E3Q8WZA6 343 aa17.82■□□□□ 0.44
HDDC3-205ENST00000559898 NXPE2Q96DL1 559 aa17.82■□□□□ 0.44
HDDC3-205ENST00000559898 PDXPQ96GD0 296 aa17.82■□□□□ 0.44
HDDC3-205ENST00000559898 SIRPGQ9P1W8 387 aa17.82■□□□□ 0.44
HDDC3-205ENST00000559898 SPASTQ9UBP0 616 aa17.82■□□□□ 0.44
HDDC3-205ENST00000559898 SEPT3Q9UH03 358 aa17.82■□□□□ 0.44
HDDC3-205ENST00000559898 IP6K2Q9UHH9 426 aa17.82■□□□□ 0.44
HDDC3-205ENST00000559898 RABGEF1Q9UJ41 708 aa17.82■□□□□ 0.44
HDDC3-205ENST00000559898 BZW2Q9Y6E2 419 aaKnown RBP17.82■□□□□ 0.44
HDDC3-205ENST00000559898 CSO75390 466 aaKnown RBP17.81■□□□□ 0.44
HDDC3-205ENST00000559898 MPOP05164 745 aa17.81■□□□□ 0.44
HDDC3-205ENST00000559898 CDK4P11802 303 aa17.81■□□□□ 0.44
HDDC3-205ENST00000559898 LHCGRP22888 699 aa17.81■□□□□ 0.44
HDDC3-205ENST00000559898 E2F1Q01094 437 aa17.81■□□□□ 0.44
HDDC3-205ENST00000559898 PPARDQ03181 441 aa17.81■□□□□ 0.44
HDDC3-205ENST00000559898 DPYSL3Q14195 570 aa17.81■□□□□ 0.44
HDDC3-205ENST00000559898 PTK2BQ14289 1009 aa17.81■□□□□ 0.44
HDDC3-205ENST00000559898 RFTN1Q14699 578 aaPredicted RBP17.81■□□□□ 0.44
HDDC3-205ENST00000559898 GRM3Q14832 879 aa17.81■□□□□ 0.44
HDDC3-205ENST00000559898 NFATC4Q14934 902 aa17.81■□□□□ 0.44
HDDC3-205ENST00000559898 AGERQ15109 404 aa17.81■□□□□ 0.44
HDDC3-205ENST00000559898 HS1BP3Q53T59 392 aa17.81■□□□□ 0.44
HDDC3-205ENST00000559898 NCBP2-AS2Q69YL0 99 aa17.81■□□□□ 0.44
HDDC3-205ENST00000559898 ERAP2Q6P179 960 aa17.81■□□□□ 0.44
HDDC3-205ENST00000559898 TSPAN33Q86UF1 283 aa17.81■□□□□ 0.44
HDDC3-205ENST00000559898 PDZD3Q86UT5 571 aa17.81■□□□□ 0.44
HDDC3-205ENST00000559898 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP17.81■□□□□ 0.44
HDDC3-205ENST00000559898 LZTR1Q8N653 840 aa17.81■□□□□ 0.44
HDDC3-205ENST00000559898 KYQ8NBH2 561 aa17.81■□□□□ 0.44
HDDC3-205ENST00000559898 PCDH19Q8TAB3 1148 aa17.81■□□□□ 0.44
HDDC3-205ENST00000559898 FAM71BQ8TC56 605 aa17.81■□□□□ 0.44
HDDC3-205ENST00000559898 PDCD6IPQ8WUM4 868 aaKnown RBP17.81■□□□□ 0.44
HDDC3-205ENST00000559898 CHP1Q99653 195 aa17.81■□□□□ 0.44
HDDC3-205ENST00000559898 IL12RB2Q99665 862 aa17.81■□□□□ 0.44
HDDC3-205ENST00000559898 MGME1Q9BQP7 344 aa17.81■□□□□ 0.44
HDDC3-205ENST00000559898 DUSP23Q9BVJ7 150 aa17.81■□□□□ 0.44
HDDC3-205ENST00000559898 NRSN2Q9GZP1 204 aa17.81■□□□□ 0.44
HDDC3-205ENST00000559898 FGF22Q9HCT0 170 aa17.81■□□□□ 0.44
HDDC3-205ENST00000559898 DONSONQ9NYP3 566 aa17.81■□□□□ 0.44
HDDC3-205ENST00000559898 EME2A4GXA9 379 aaPredicted RBP17.8■□□□□ 0.44
HDDC3-205ENST00000559898 LMO7DNF2Z398 122 aa17.8■□□□□ 0.44
HDDC3-205ENST00000559898 HTRA2O43464 458 aaPredicted RBP17.8■□□□□ 0.44
HDDC3-205ENST00000559898 PDHA1P08559 390 aa17.8■□□□□ 0.44
HDDC3-205ENST00000559898 ELFN1P0C7U0 828 aa17.8■□□□□ 0.44
HDDC3-205ENST00000559898 CTPS1P17812 591 aa17.8■□□□□ 0.44
HDDC3-205ENST00000559898 HNRNPH3P31942 346 aaKnown RBP17.8■□□□□ 0.44
HDDC3-205ENST00000559898 EIF2S3P41091 472 aaKnown RBP17.8■□□□□ 0.44
HDDC3-205ENST00000559898 SUOXP51687 545 aa17.8■□□□□ 0.44
HDDC3-205ENST00000559898 HK3P52790 923 aa17.8■□□□□ 0.44
HDDC3-205ENST00000559898 SRP54P61011 504 aaKnown RBP17.8■□□□□ 0.44
HDDC3-205ENST00000559898 KRT81Q14533 505 aa17.8■□□□□ 0.44
HDDC3-205ENST00000559898 ZNF235Q14590 738 aa17.8■□□□□ 0.44
HDDC3-205ENST00000559898 CNGA3Q16281 694 aa17.8■□□□□ 0.44
HDDC3-205ENST00000559898 C6orf132Q5T0Z8 1188 aa17.8■□□□□ 0.44
HDDC3-205ENST00000559898 DENND2CQ68D51 928 aa17.8■□□□□ 0.44
HDDC3-205ENST00000559898 HSD11B1LQ7Z5J1 315 aa17.8■□□□□ 0.44
HDDC3-205ENST00000559898 ATPAF2Q8N5M1 289 aa17.8■□□□□ 0.44
HDDC3-205ENST00000559898 CCL4L1Q8NHW4 92 aa17.8■□□□□ 0.44
HDDC3-205ENST00000559898 MAPK15Q8TD08 544 aa17.8■□□□□ 0.44
HDDC3-205ENST00000559898 COQ10AQ96MF6 247 aa17.8■□□□□ 0.44
HDDC3-205ENST00000559898 ZNF599Q96NL3 588 aa17.8■□□□□ 0.44
HDDC3-205ENST00000559898 BBC3Q96PG8 261 aaPredicted RBP17.8■□□□□ 0.44
HDDC3-205ENST00000559898 NUDCD1Q96RS6 583 aa17.8■□□□□ 0.44
HDDC3-205ENST00000559898 C1QTNF7Q9BXJ2 289 aa17.8■□□□□ 0.44
HDDC3-205ENST00000559898 SLC13A1Q9BZW2 595 aa17.8■□□□□ 0.44
HDDC3-205ENST00000559898 NT5MQ9NPB1 228 aa17.8■□□□□ 0.44
HDDC3-205ENST00000559898 SCUBE2Q9NQ36 999 aa17.8■□□□□ 0.44
HDDC3-205ENST00000559898 SALL4Q9UJQ4 1053 aa17.8■□□□□ 0.44
HDDC3-205ENST00000559898 RAI2Q9Y5P3 530 aa17.8■□□□□ 0.44
HDDC3-205ENST00000559898 A0A087WV48 116 aa17.79■□□□□ 0.44
HDDC3-205ENST00000559898 NPIPB15A6NHN6 443 aaPredicted RBP17.79■□□□□ 0.44
HDDC3-205ENST00000559898 TMEM110-MUSTN1A8MSY1 372 aa17.79■□□□□ 0.44
HDDC3-205ENST00000559898 MYO1FO00160 1098 aa17.79■□□□□ 0.44
HDDC3-205ENST00000559898 TPP1O14773 563 aa17.79■□□□□ 0.44
HDDC3-205ENST00000559898 FUCA1P04066 466 aa17.79■□□□□ 0.44
HDDC3-205ENST00000559898 ANXA6P08133 673 aa17.79■□□□□ 0.44
HDDC3-205ENST00000559898 ALPIP09923 528 aa17.79■□□□□ 0.44
HDDC3-205ENST00000559898 ZNF135P52742 658 aaPredicted RBP17.79■□□□□ 0.44
HDDC3-205ENST00000559898 PDX1P52945 283 aa17.79■□□□□ 0.44
HDDC3-205ENST00000559898 AP1S1P61966 158 aa17.79■□□□□ 0.44
HDDC3-205ENST00000559898 SLC10A2Q12908 348 aaPredicted RBP17.79■□□□□ 0.44
HDDC3-205ENST00000559898 NR0B2Q15466 257 aa17.79■□□□□ 0.44
HDDC3-205ENST00000559898 PQLC3Q8N755 202 aa17.79■□□□□ 0.44
HDDC3-205ENST00000559898 RNF214Q8ND24 703 aa17.79■□□□□ 0.44
HDDC3-205ENST00000559898 BTN2A2Q8WVV5 523 aa17.79■□□□□ 0.44
HDDC3-205ENST00000559898 CTTNBP2NLQ9P2B4 639 aa17.79■□□□□ 0.44
HDDC3-205ENST00000559898 GULP1Q9UBP9 304 aa17.79■□□□□ 0.44
HDDC3-205ENST00000559898 CACNA1GO43497 2377 aa17.78■□□□□ 0.44
HDDC3-205ENST00000559898 USP12O75317 370 aa17.78■□□□□ 0.44
HDDC3-205ENST00000559898 PROSCO94903 275 aa17.78■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms