RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 NKX1-2Q9UD57 310 aaPredicted RBP12.73□□□□□ -0.37
SHMT2-229ENST00000557348 ZFP69BQ9UJL9 534 aa12.73□□□□□ -0.37
SHMT2-229ENST00000557348 MTO1Q9Y2Z2 717 aaKnown RBP12.73□□□□□ -0.37
SHMT2-229ENST00000557348 A8MUI8 341 aa12.72□□□□□ -0.37
SHMT2-229ENST00000557348 C5orf67F2Z3F1 127 aa12.72□□□□□ -0.37
SHMT2-229ENST00000557348 CBX4O00257 560 aa12.72□□□□□ -0.37
SHMT2-229ENST00000557348 INSIG1O15503 277 aa12.72□□□□□ -0.37
SHMT2-229ENST00000557348 PLIN3O60664 434 aa12.72□□□□□ -0.37
SHMT2-229ENST00000557348 TBL1XO60907 577 aa12.72□□□□□ -0.37
SHMT2-229ENST00000557348 ATXN1LP0C7T5 689 aaKnown RBP12.72□□□□□ -0.37
SHMT2-229ENST00000557348 CLCN5P51795 746 aa12.72□□□□□ -0.37
SHMT2-229ENST00000557348 RAP1GDS1P52306 607 aa12.72□□□□□ -0.37
SHMT2-229ENST00000557348 EPHA5P54756 1037 aa12.72□□□□□ -0.37
SHMT2-229ENST00000557348 PRAMEP78395 509 aa12.72□□□□□ -0.37
SHMT2-229ENST00000557348 TMPRSS15P98073 1019 aa12.72□□□□□ -0.37
SHMT2-229ENST00000557348 POU4F1Q01851 419 aa12.72□□□□□ -0.37
SHMT2-229ENST00000557348 ACVR1Q04771 509 aa12.72□□□□□ -0.37
SHMT2-229ENST00000557348 CNGA3Q16281 694 aa12.72□□□□□ -0.37
SHMT2-229ENST00000557348 SIRPB2Q5JXA9 342 aa12.72□□□□□ -0.37
SHMT2-229ENST00000557348 N4BP2L1Q5TBK1 243 aaPredicted RBP12.72□□□□□ -0.37
SHMT2-229ENST00000557348 C6orf163Q5TEZ5 329 aa12.72□□□□□ -0.37
SHMT2-229ENST00000557348 TXNDC8Q6A555 127 aa12.72□□□□□ -0.37
SHMT2-229ENST00000557348 RETSATQ6NUM9 610 aa12.72□□□□□ -0.37
SHMT2-229ENST00000557348 ESRP1Q6NXG1 681 aaKnown RBP12.72□□□□□ -0.37
SHMT2-229ENST00000557348 CDHR3Q6ZTQ4 885 aa12.72□□□□□ -0.37
SHMT2-229ENST00000557348 GAREM2Q75VX8 874 aa12.72□□□□□ -0.37
SHMT2-229ENST00000557348 OTOAQ7RTW8 1153 aa12.72□□□□□ -0.37
SHMT2-229ENST00000557348 PPP1R14CQ8TAE6 165 aa12.72□□□□□ -0.37
SHMT2-229ENST00000557348 STYXQ8WUJ0 223 aa12.72□□□□□ -0.37
SHMT2-229ENST00000557348 STMN2Q93045 179 aa12.72□□□□□ -0.37
SHMT2-229ENST00000557348 AGAP2Q99490 1192 aa12.72□□□□□ -0.37
SHMT2-229ENST00000557348 LRRC3Q9BY71 257 aa12.72□□□□□ -0.37
SHMT2-229ENST00000557348 ATXN3LQ9H3M9 355 aa12.72□□□□□ -0.37
SHMT2-229ENST00000557348 MFSD1Q9H3U5 465 aa12.72□□□□□ -0.37
SHMT2-229ENST00000557348 NMRK1Q9NWW6 199 aa12.72□□□□□ -0.37
SHMT2-229ENST00000557348 CHCHD3Q9NX63 227 aaKnown RBP12.72□□□□□ -0.37
SHMT2-229ENST00000557348 DLGAP2Q9P1A6 1054 aa12.72□□□□□ -0.37
SHMT2-229ENST00000557348 CAMSAP3Q9P1Y5 1249 aaPredicted RBP12.72□□□□□ -0.37
SHMT2-229ENST00000557348 ARHGAP26Q9UNA1 814 aa12.72□□□□□ -0.37
SHMT2-229ENST00000557348 A0A087X1B8 175 aa12.71□□□□□ -0.37
SHMT2-229ENST00000557348 A0A096LPK6 155 aa12.71□□□□□ -0.37
SHMT2-229ENST00000557348 E2F8A0AVK6 867 aa12.71□□□□□ -0.37
SHMT2-229ENST00000557348 WDR91A4D1P6 747 aa12.71□□□□□ -0.37
SHMT2-229ENST00000557348 C2orf71A6NGG8 1288 aa12.71□□□□□ -0.37
SHMT2-229ENST00000557348 GREM1O60565 184 aa12.71□□□□□ -0.37
SHMT2-229ENST00000557348 TSPAN3O60637 253 aa12.71□□□□□ -0.37
SHMT2-229ENST00000557348 XYLBO75191 536 aa12.71□□□□□ -0.37
SHMT2-229ENST00000557348 T-ENOLP0DO92 83 aa12.71□□□□□ -0.37
SHMT2-229ENST00000557348 CR2P20023 1033 aa12.71□□□□□ -0.37
SHMT2-229ENST00000557348 SLC12A2P55011 1212 aa12.71□□□□□ -0.37
SHMT2-229ENST00000557348 ASPHQ12797 758 aa12.71□□□□□ -0.37
SHMT2-229ENST00000557348 ITGA9Q13797 1035 aa12.71□□□□□ -0.37
SHMT2-229ENST00000557348 ZNF470Q6ECI4 717 aa12.71□□□□□ -0.37
SHMT2-229ENST00000557348 CARNMT1Q8N4J0 409 aa12.71□□□□□ -0.37
SHMT2-229ENST00000557348 GFM2Q969S9 779 aaKnown RBP12.71□□□□□ -0.37
SHMT2-229ENST00000557348 ZNF184Q99676 751 aaPredicted RBP12.71□□□□□ -0.37
SHMT2-229ENST00000557348 C19orf43Q9BQ61 176 aa12.71□□□□□ -0.37
SHMT2-229ENST00000557348 DENND2DQ9H6A0 471 aaPredicted RBP12.71□□□□□ -0.37
SHMT2-229ENST00000557348 GPAMQ9HCL2 828 aa12.71□□□□□ -0.37
SHMT2-229ENST00000557348 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP12.71□□□□□ -0.375e-12■■□□□ 11.4
SHMT2-229ENST00000557348 HACD3Q9P035 362 aa12.71□□□□□ -0.37
SHMT2-229ENST00000557348 VPS28Q9UK41 221 aa12.71□□□□□ -0.37
SHMT2-229ENST00000557348 FBXO5Q9UKT4 447 aa12.71□□□□□ -0.37
SHMT2-229ENST00000557348 KIAA1671Q9BY89 1806 aa12.71□□□□□ -0.37
SHMT2-229ENST00000557348 PFDN6O15212 129 aa12.7□□□□□ -0.38
SHMT2-229ENST00000557348 PROCP04070 461 aa12.7□□□□□ -0.38
SHMT2-229ENST00000557348 IMPDH2P12268 514 aa12.7□□□□□ -0.38
SHMT2-229ENST00000557348 STMN1P16949 149 aa12.7□□□□□ -0.38
SHMT2-229ENST00000557348 PTPN2P17706 415 aa12.7□□□□□ -0.38
SHMT2-229ENST00000557348 BGNP21810 368 aa12.7□□□□□ -0.38
SHMT2-229ENST00000557348 CHRNA4P43681 627 aa12.7□□□□□ -0.38
SHMT2-229ENST00000557348 CLCN4P51793 760 aa12.7□□□□□ -0.38
SHMT2-229ENST00000557348 AP1S1P61966 158 aa12.7□□□□□ -0.38
SHMT2-229ENST00000557348 IRX4P78413 519 aa12.7□□□□□ -0.38
SHMT2-229ENST00000557348 MSLNQ13421 630 aaPredicted RBP12.7□□□□□ -0.38
SHMT2-229ENST00000557348 USP10Q14694 798 aaKnown RBP12.7□□□□□ -0.38
SHMT2-229ENST00000557348 MRNIPQ6NTE8 343 aa12.7□□□□□ -0.38
SHMT2-229ENST00000557348 LRRC74BQ6ZQY2 392 aa12.7□□□□□ -0.38
SHMT2-229ENST00000557348 CLEC14AQ86T13 490 aa12.7□□□□□ -0.38
SHMT2-229ENST00000557348 CRLF3Q8IUI8 442 aa12.7□□□□□ -0.38
SHMT2-229ENST00000557348 KIAA1958Q8N8K9 716 aa12.7□□□□□ -0.38
SHMT2-229ENST00000557348 TDRD5Q8NAT2 981 aaKnown RBP12.7□□□□□ -0.38
SHMT2-229ENST00000557348 GPR150Q8NGU9 434 aa12.7□□□□□ -0.38
SHMT2-229ENST00000557348 NSL1Q96IY1 281 aa12.7□□□□□ -0.38
SHMT2-229ENST00000557348 ZNF778Q96MU6 729 aa12.7□□□□□ -0.38
SHMT2-229ENST00000557348 TRIB3Q96RU7 358 aa12.7□□□□□ -0.38
SHMT2-229ENST00000557348 FEM1AQ9BSK4 669 aa12.7□□□□□ -0.38
SHMT2-229ENST00000557348 STN1Q9H668 368 aaKnown RBP12.7□□□□□ -0.38
SHMT2-229ENST00000557348 SLCO1B3Q9NPD5 702 aa12.7□□□□□ -0.38
SHMT2-229ENST00000557348 THAP1Q9NVV9 213 aa12.7□□□□□ -0.38
SHMT2-229ENST00000557348 SLC17A6Q9P2U8 582 aa12.7□□□□□ -0.38
SHMT2-229ENST00000557348 ATXN10Q9UBB4 475 aa12.7□□□□□ -0.38
SHMT2-229ENST00000557348 HAO1Q9UJM8 370 aa12.7□□□□□ -0.38
SHMT2-229ENST00000557348 VPS9D1Q9Y2B5 631 aa12.7□□□□□ -0.38
SHMT2-229ENST00000557348 DNAH12Q6ZR08 3092 aa12.7□□□□□ -0.38
SHMT2-229ENST00000557348 CENPFP49454 3210 aa12.7□□□□□ -0.38
SHMT2-229ENST00000557348 PDE4DIPQ5VU43 2346 aa12.7□□□□□ -0.38
SHMT2-229ENST00000557348 SMIM31A0A1B0GVY4 71 aa12.7□□□□□ -0.38
SHMT2-229ENST00000557348 C2orf81A6NN90 581 aa12.7□□□□□ -0.38
SHMT2-229ENST00000557348 SERPINE1P05121 402 aa12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms