RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 MTM1Q13496 603 aa13.88□□□□□ -0.19
SHMT2-226ENST00000556825 SKIV2LQ15477 1246 aaKnown RBP13.88□□□□□ -0.19
SHMT2-226ENST00000556825 GEN1Q17RS7 908 aa13.88□□□□□ -0.19
SHMT2-226ENST00000556825 ADPRMQ3LIE5 342 aa13.88□□□□□ -0.19
SHMT2-226ENST00000556825 EPGNQ6UW88 154 aa13.88□□□□□ -0.19
SHMT2-226ENST00000556825 PRSS48Q7RTY5 328 aa13.88□□□□□ -0.19
SHMT2-226ENST00000556825 KRT25Q7Z3Z0 450 aa13.88□□□□□ -0.19
SHMT2-226ENST00000556825 LIMS2Q7Z4I7 341 aa13.88□□□□□ -0.19
SHMT2-226ENST00000556825 KIF18BQ86Y91 864 aa13.88□□□□□ -0.19
SHMT2-226ENST00000556825 EPHX4Q8IUS5 362 aa13.88□□□□□ -0.19
SHMT2-226ENST00000556825 KCT2Q8NC54 265 aa13.88□□□□□ -0.19
SHMT2-226ENST00000556825 GLB1L3Q8NCI6 653 aaPredicted RBP13.88□□□□□ -0.19
SHMT2-226ENST00000556825 OR52H1Q8NGJ2 320 aa13.88□□□□□ -0.19
SHMT2-226ENST00000556825 WDR48Q8TAF3 677 aa13.88□□□□□ -0.19
SHMT2-226ENST00000556825 TEX47Q8TBZ9 253 aa13.88□□□□□ -0.19
SHMT2-226ENST00000556825 PPP1R13LQ8WUF5 828 aa13.88□□□□□ -0.19
SHMT2-226ENST00000556825 RSAD2Q8WXG1 361 aa13.88□□□□□ -0.19
SHMT2-226ENST00000556825 FOXJ1Q92949 421 aa13.88□□□□□ -0.19
SHMT2-226ENST00000556825 EYA3Q99504 573 aa13.88□□□□□ -0.19
SHMT2-226ENST00000556825 SORT1Q99523 831 aa13.88□□□□□ -0.19
SHMT2-226ENST00000556825 INTS2Q9H0H0 1204 aaKnown RBP13.88□□□□□ -0.19
SHMT2-226ENST00000556825 MIR1-1HGQ9H1L0 117 aa13.88□□□□□ -0.19
SHMT2-226ENST00000556825 TUFT1Q9NNX1 390 aa13.88□□□□□ -0.19
SHMT2-226ENST00000556825 SDHAF3Q9NRP4 125 aa13.88□□□□□ -0.19
SHMT2-226ENST00000556825 SRP68Q9UHB9 627 aaKnown RBP13.88□□□□□ -0.19
SHMT2-226ENST00000556825 AP4E1Q9UPM8 1137 aa13.88□□□□□ -0.19
SHMT2-226ENST00000556825 RNF103-CHMP3A0A140T963 221 aa13.87□□□□□ -0.19
SHMT2-226ENST00000556825 APOL1O14791 398 aa13.87□□□□□ -0.19
SHMT2-226ENST00000556825 SLC22A2O15244 555 aa13.87□□□□□ -0.19
SHMT2-226ENST00000556825 ECDO95905 644 aaPredicted RBP13.87□□□□□ -0.19
SHMT2-226ENST00000556825 ALBP02768 609 aa13.87□□□□□ -0.19
SHMT2-226ENST00000556825 CASP4P49662 377 aa13.87□□□□□ -0.19
SHMT2-226ENST00000556825 MFAP3P55082 362 aa13.87□□□□□ -0.19
SHMT2-226ENST00000556825 ATP6AP1Q15904 470 aa13.87□□□□□ -0.19
SHMT2-226ENST00000556825 CYBRD1Q53TN4 286 aa13.87□□□□□ -0.19
SHMT2-226ENST00000556825 LGSNQ5TDP6 509 aa13.87□□□□□ -0.19
SHMT2-226ENST00000556825 FAXCQ5TGI0 409 aa13.87□□□□□ -0.19
SHMT2-226ENST00000556825 TATDN1Q6P1N9 297 aa13.87□□□□□ -0.19
SHMT2-226ENST00000556825 PNCKQ6P2M8 343 aa13.87□□□□□ -0.19
SHMT2-226ENST00000556825 CATSPER4Q7RTX7 472 aa13.87□□□□□ -0.19
SHMT2-226ENST00000556825 SLC9A6Q92581 669 aa13.87□□□□□ -0.19
SHMT2-226ENST00000556825 NCLNQ969V3 563 aa13.87□□□□□ -0.19
SHMT2-226ENST00000556825 ITM2CQ9NQX7 267 aa13.87□□□□□ -0.19
SHMT2-226ENST00000556825 PAK1IP1Q9NWT1 392 aaPredicted RBP13.87□□□□□ -0.19
SHMT2-226ENST00000556825 TAS2R9Q9NYW1 312 aa13.87□□□□□ -0.19
SHMT2-226ENST00000556825 GMPR2Q9P2T1 348 aaKnown RBP13.87□□□□□ -0.19
SHMT2-226ENST00000556825 DNPEPQ9ULA0 475 aa13.87□□□□□ -0.19
SHMT2-226ENST00000556825 PRELID3BQ9Y3B1 194 aa13.87□□□□□ -0.19
SHMT2-226ENST00000556825 AP3D1O14617 1153 aa13.87□□□□□ -0.19
SHMT2-226ENST00000556825 B4GAT1O43505 415 aa13.87□□□□□ -0.19
SHMT2-226ENST00000556825 SLITRK3O94933 977 aa13.87□□□□□ -0.19
SHMT2-226ENST00000556825 RASAL1O95294 804 aa13.87□□□□□ -0.19
SHMT2-226ENST00000556825 TOP3BO95985 862 aaKnown RBP13.87□□□□□ -0.19
SHMT2-226ENST00000556825 NR3C1P04150 777 aa13.87□□□□□ -0.19
SHMT2-226ENST00000556825 SERPINE1P05121 402 aa13.87□□□□□ -0.19
SHMT2-226ENST00000556825 P4HBP07237 508 aaKnown RBP13.87□□□□□ -0.19
SHMT2-226ENST00000556825 CYP19A1P11511 503 aaPredicted RBP13.87□□□□□ -0.19
SHMT2-226ENST00000556825 ZNF30P17039 623 aa13.87□□□□□ -0.19
SHMT2-226ENST00000556825 POU3F3P20264 500 aaPredicted RBP13.87□□□□□ -0.19
SHMT2-226ENST00000556825 RFX1P22670 979 aa13.87□□□□□ -0.19
SHMT2-226ENST00000556825 F8A1P23610 371 aa13.87□□□□□ -0.19
SHMT2-226ENST00000556825 FMO5P49326 533 aa13.87□□□□□ -0.19
SHMT2-226ENST00000556825 NKX3-2P78367 333 aa13.87□□□□□ -0.19
SHMT2-226ENST00000556825 GAD2Q05329 585 aa13.87□□□□□ -0.19
SHMT2-226ENST00000556825 FAPQ12884 760 aa13.87□□□□□ -0.19
SHMT2-226ENST00000556825 GPR50Q13585 617 aa13.87□□□□□ -0.19
SHMT2-226ENST00000556825 ELOAQ14241 798 aaKnown RBP13.87□□□□□ -0.19
SHMT2-226ENST00000556825 PLCL1Q15111 1095 aa13.87□□□□□ -0.19
SHMT2-226ENST00000556825 TMEM81Q6P7N7 255 aa13.87□□□□□ -0.19
SHMT2-226ENST00000556825 SPRED1Q7Z699 444 aa13.87□□□□□ -0.19
SHMT2-226ENST00000556825 PHC2Q8IXK0 858 aa13.87□□□□□ -0.19
SHMT2-226ENST00000556825 PPIL6Q8IXY8 311 aa13.87□□□□□ -0.19
SHMT2-226ENST00000556825 SYNE4Q8N205 404 aa13.87□□□□□ -0.19
SHMT2-226ENST00000556825 ATAD1Q8NBU5 361 aa13.87□□□□□ -0.19
SHMT2-226ENST00000556825 MCUQ8NE86 351 aa13.87□□□□□ -0.19
SHMT2-226ENST00000556825 ST8SIA2Q92186 375 aa13.87□□□□□ -0.19
SHMT2-226ENST00000556825 ZHX1-C8orf76Q96EF9 292 aa13.87□□□□□ -0.19
SHMT2-226ENST00000556825 SLC47A1Q96FL8 570 aa13.87□□□□□ -0.19
SHMT2-226ENST00000556825 PHOX2BQ99453 314 aa13.87□□□□□ -0.19
SHMT2-226ENST00000556825 C12orf57Q99622 126 aa13.87□□□□□ -0.19
SHMT2-226ENST00000556825 RAB34Q9BZG1 259 aa13.87□□□□□ -0.19
SHMT2-226ENST00000556825 SLIRPQ9GZT3 109 aaKnown RBP13.87□□□□□ -0.19
SHMT2-226ENST00000556825 PDZD7Q9H5P4 517 aa13.87□□□□□ -0.19
SHMT2-226ENST00000556825 CAMSAP3Q9P1Y5 1249 aaPredicted RBP13.87□□□□□ -0.19
SHMT2-226ENST00000556825 DOT1LQ8TEK3 1739 aa13.87□□□□□ -0.19
SHMT2-226ENST00000556825 AKAP11Q9UKA4 1901 aa13.86□□□□□ -0.19
SHMT2-226ENST00000556825 ROBO3Q96MS0 1386 aa13.86□□□□□ -0.19
SHMT2-226ENST00000556825 SPATA31A5Q5VU36 1347 aa13.86□□□□□ -0.19
SHMT2-226ENST00000556825 SPATA31A7Q8IWB4 1347 aa13.86□□□□□ -0.19
SHMT2-226ENST00000556825 TCRBV9S1A1TA0A576 114 aa13.86□□□□□ -0.19
SHMT2-226ENST00000556825 PIGNO95427 931 aa13.86□□□□□ -0.19
SHMT2-226ENST00000556825 RPS17P08708 135 aaKnown RBP13.86□□□□□ -0.19
SHMT2-226ENST00000556825 SLC2A3P11169 496 aa13.86□□□□□ -0.19
SHMT2-226ENST00000556825 MAOBP27338 520 aa13.86□□□□□ -0.19
SHMT2-226ENST00000556825 MAPK4P31152 587 aa13.86□□□□□ -0.19
SHMT2-226ENST00000556825 HMGCLP35914 325 aa13.86□□□□□ -0.19
SHMT2-226ENST00000556825 HOXA1P49639 335 aaPredicted RBP13.86□□□□□ -0.19
SHMT2-226ENST00000556825 TPMTP51580 245 aa13.86□□□□□ -0.19
SHMT2-226ENST00000556825 TRIM28Q13263 835 aaKnown RBP13.86□□□□□ -0.19
SHMT2-226ENST00000556825 MFSD10Q14728 455 aa13.86□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms