RNA–Protein interactions for RNA: ENST00000554975.5

SHMT2-216, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 780 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-216ENST00000554975 CD48P09326 243 aa11.27□□□□□ -0.61
SHMT2-216ENST00000554975 TROVE2P10155 538 aaKnown RBP eCLIP11.27□□□□□ -0.61
SHMT2-216ENST00000554975 ETS1P14921 441 aa11.27□□□□□ -0.61
SHMT2-216ENST00000554975 CNTFP26441 200 aa11.27□□□□□ -0.61
SHMT2-216ENST00000554975 CSNK1EP49674 416 aaKnown RBP11.27□□□□□ -0.61
SHMT2-216ENST00000554975 SERPINB9P50453 376 aa11.27□□□□□ -0.61
SHMT2-216ENST00000554975 GDF10P55107 478 aa11.27□□□□□ -0.61
SHMT2-216ENST00000554975 HDAC4P56524 1084 aa11.27□□□□□ -0.61
SHMT2-216ENST00000554975 ATP11AP98196 1134 aa11.27□□□□□ -0.61
SHMT2-216ENST00000554975 SETDB1Q15047 1291 aa11.27□□□□□ -0.61
SHMT2-216ENST00000554975 DBN1Q16643 649 aa11.27□□□□□ -0.61
SHMT2-216ENST00000554975 C15orf59Q2T9L4 293 aaPredicted RBP11.27□□□□□ -0.61
SHMT2-216ENST00000554975 KIF19Q2TAC6 998 aa11.27□□□□□ -0.61
SHMT2-216ENST00000554975 FUT11Q495W5 492 aa11.27□□□□□ -0.61
SHMT2-216ENST00000554975 HECTD3Q5T447 861 aa11.27□□□□□ -0.61
SHMT2-216ENST00000554975 BTBD8Q5XKL5 378 aa11.27□□□□□ -0.61
SHMT2-216ENST00000554975 GRAMD4Q6IC98 578 aa11.27□□□□□ -0.61
SHMT2-216ENST00000554975 PMF1Q6P1K2 205 aa11.27□□□□□ -0.61
SHMT2-216ENST00000554975 UNC45BQ8IWX7 931 aa11.27□□□□□ -0.61
SHMT2-216ENST00000554975 PLD5Q8N7P1 536 aa11.27□□□□□ -0.61
SHMT2-216ENST00000554975 OVCA2Q8WZ82 227 aa11.27□□□□□ -0.61
SHMT2-216ENST00000554975 APOPT1Q96IL0 206 aa11.27□□□□□ -0.61
SHMT2-216ENST00000554975 NAT9Q9BTE0 207 aa11.27□□□□□ -0.61
SHMT2-216ENST00000554975 DUSP16Q9BY84 665 aa11.27□□□□□ -0.61
SHMT2-216ENST00000554975 SEMA4CQ9C0C4 833 aa11.27□□□□□ -0.61
SHMT2-216ENST00000554975 MKRN2Q9H000 416 aaKnown RBP11.27□□□□□ -0.61
SHMT2-216ENST00000554975 IQCGQ9H095 443 aaKnown RBP11.27□□□□□ -0.61
SHMT2-216ENST00000554975 FBXO44Q9H4M3 255 aa11.27□□□□□ -0.61
SHMT2-216ENST00000554975 CCSER2Q9H7U1 834 aa11.27□□□□□ -0.61
SHMT2-216ENST00000554975 LRRC4Q9HBW1 653 aa11.27□□□□□ -0.61
SHMT2-216ENST00000554975 RAB6BQ9NRW1 208 aa11.27□□□□□ -0.61
SHMT2-216ENST00000554975 TXLNGQ9NUQ3 528 aa11.27□□□□□ -0.61
SHMT2-216ENST00000554975 COMMD8Q9NX08 183 aa11.27□□□□□ -0.61
SHMT2-216ENST00000554975 MKS1Q9NXB0 559 aa11.27□□□□□ -0.61
SHMT2-216ENST00000554975 TBC1D14Q9P2M4 693 aa11.27□□□□□ -0.61
SHMT2-216ENST00000554975 RABGEF1Q9UJ41 708 aa11.27□□□□□ -0.61
SHMT2-216ENST00000554975 SLC12A4Q9UP95 1085 aa11.27□□□□□ -0.61
SHMT2-216ENST00000554975 SNX11Q9Y5W9 270 aa11.27□□□□□ -0.61
SHMT2-216ENST00000554975 METTL12A8MUP2 240 aa11.26□□□□□ -0.61
SHMT2-216ENST00000554975 NEDD8-MDP1E9PL57 170 aa11.26□□□□□ -0.61
SHMT2-216ENST00000554975 MTSS1O43312 755 aa11.26□□□□□ -0.61
SHMT2-216ENST00000554975 TNFSF14O43557 240 aa11.26□□□□□ -0.61
SHMT2-216ENST00000554975 GCATO75600 419 aa11.26□□□□□ -0.61
SHMT2-216ENST00000554975 KRT38O76015 456 aa11.26□□□□□ -0.61
SHMT2-216ENST00000554975 IRF1P10914 325 aa11.26□□□□□ -0.61
SHMT2-216ENST00000554975 MLNP12872 115 aa11.26□□□□□ -0.61
SHMT2-216ENST00000554975 NOS2P35228 1153 aa11.26□□□□□ -0.61
SHMT2-216ENST00000554975 SCTRP47872 440 aa11.26□□□□□ -0.61
SHMT2-216ENST00000554975 PGFP49763 221 aa11.26□□□□□ -0.61
SHMT2-216ENST00000554975 SULT1E1P49888 294 aa11.26□□□□□ -0.61
SHMT2-216ENST00000554975 YWHAGP61981 247 aaKnown RBP eCLIP11.26□□□□□ -0.61
SHMT2-216ENST00000554975 FASTKD3Q14CZ7 662 aaKnown RBP11.26□□□□□ -0.61
SHMT2-216ENST00000554975 LRRC14Q15048 493 aa11.26□□□□□ -0.61
SHMT2-216ENST00000554975 SLC25A52Q3SY17 297 aa11.26□□□□□ -0.61
SHMT2-216ENST00000554975 ANKRD22Q5VYY1 191 aa11.26□□□□□ -0.61
SHMT2-216ENST00000554975 TRNP1Q6NT89 227 aa11.26□□□□□ -0.61
SHMT2-216ENST00000554975 ZNF449Q6P9G9 518 aa11.26□□□□□ -0.61
SHMT2-216ENST00000554975 C3orf62Q6ZUJ4 267 aa11.26□□□□□ -0.61
SHMT2-216ENST00000554975 GPRIN1Q7Z2K8 1008 aa11.26□□□□□ -0.61
SHMT2-216ENST00000554975 GPR155Q7Z3F1 870 aa11.26□□□□□ -0.61
SHMT2-216ENST00000554975 CHSY1Q86X52 802 aa11.26□□□□□ -0.61
SHMT2-216ENST00000554975 CACUL1Q86Y37 369 aa11.26□□□□□ -0.61
SHMT2-216ENST00000554975 GDAP1Q8TB36 358 aa11.26□□□□□ -0.61
SHMT2-216ENST00000554975 SLC44A1Q8WWI5 657 aa11.26□□□□□ -0.61
SHMT2-216ENST00000554975 NTAN1Q96AB6 310 aa11.26□□□□□ -0.61
SHMT2-216ENST00000554975 OTUB2Q96DC9 234 aa11.26□□□□□ -0.61
SHMT2-216ENST00000554975 PWWP2AQ96N64 755 aa11.26□□□□□ -0.61
SHMT2-216ENST00000554975 BRD8Q9H0E9 1235 aa11.26□□□□□ -0.61
SHMT2-216ENST00000554975 DHX35Q9H5Z1 703 aaKnown RBP11.26□□□□□ -0.61
SHMT2-216ENST00000554975 CSNK1G1Q9HCP0 422 aa11.26□□□□□ -0.61
SHMT2-216ENST00000554975 ITM2CQ9NQX7 267 aa11.26□□□□□ -0.61
SHMT2-216ENST00000554975 TLR8Q9NR97 1041 aaKnown RBP11.26□□□□□ -0.61
SHMT2-216ENST00000554975 ETNK2Q9NVF9 386 aa11.26□□□□□ -0.61
SHMT2-216ENST00000554975 CHMP2BQ9UQN3 213 aa11.26□□□□□ -0.61
SHMT2-216ENST00000554975 TEX264Q9Y6I9 313 aa11.26□□□□□ -0.61
SHMT2-216ENST00000554975 USH1CQ9Y6N9 552 aa11.26□□□□□ -0.61
SHMT2-216ENST00000554975 DOCK9Q9BZ29 2069 aa11.25□□□□□ -0.61
SHMT2-216ENST00000554975 E9PAM4 449 aa11.25□□□□□ -0.61
SHMT2-216ENST00000554975 GOLGA8MH3BSY2 632 aa11.25□□□□□ -0.61
SHMT2-216ENST00000554975 ZBTB24O43167 697 aaPredicted RBP11.25□□□□□ -0.61
SHMT2-216ENST00000554975 TYROBPO43914 113 aa11.25□□□□□ -0.61
SHMT2-216ENST00000554975 CACNG3O60359 315 aa11.25□□□□□ -0.61
SHMT2-216ENST00000554975 GREM1O60565 184 aa11.25□□□□□ -0.61
SHMT2-216ENST00000554975 GRAP2O75791 330 aa11.25□□□□□ -0.61
SHMT2-216ENST00000554975 IL1BP01584 269 aa11.25□□□□□ -0.61
SHMT2-216ENST00000554975 MT-ND3P03897 115 aa11.25□□□□□ -0.61
SHMT2-216ENST00000554975 CISD3P0C7P0 127 aa11.25□□□□□ -0.61
SHMT2-216ENST00000554975 TAC1P20366 129 aa11.25□□□□□ -0.61
SHMT2-216ENST00000554975 GCAP28676 217 aa11.25□□□□□ -0.61
SHMT2-216ENST00000554975 TPMTP51580 245 aa11.25□□□□□ -0.61
SHMT2-216ENST00000554975 GPX6P59796 221 aa11.25□□□□□ -0.61
SHMT2-216ENST00000554975 YWHAZP63104 245 aaKnown RBP11.25□□□□□ -0.61
SHMT2-216ENST00000554975 MMRN1Q13201 1228 aa11.25□□□□□ -0.61
SHMT2-216ENST00000554975 SEMA5AQ13591 1074 aa11.25□□□□□ -0.61
SHMT2-216ENST00000554975 PDK1Q15118 436 aa11.25□□□□□ -0.61
SHMT2-216ENST00000554975 ZKSCAN8Q15776 578 aaPredicted RBP11.25□□□□□ -0.61
SHMT2-216ENST00000554975 ARL13BQ3SXY8 428 aa11.25□□□□□ -0.61
SHMT2-216ENST00000554975 PPP6R3Q5H9R7 873 aaPredicted RBP11.25□□□□□ -0.61
SHMT2-216ENST00000554975 TTC39BQ5VTQ0 682 aaPredicted RBP11.25□□□□□ -0.61
SHMT2-216ENST00000554975 SDE2Q6IQ49 451 aa11.25□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms