RNA–Protein interactions for RNA: ENST00000553923.1

SRP54-204, Transcript of signal recognition particle 54, humanhuman

TSL 2

Gene SRP54, Length 573 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-204ENST00000553923 AGXT2Q9BYV1 514 aa2.42□□□□□ -2.02
SRP54-204ENST00000553923 CCDC134Q9H6E4 229 aa2.42□□□□□ -2.02
SRP54-204ENST00000553923 ACTR5Q9H9F9 607 aaPredicted RBP2.42□□□□□ -2.02
SRP54-204ENST00000553923 TMEM248Q9NWD8 314 aa2.42□□□□□ -2.02
SRP54-204ENST00000553923 CWC25Q9NXE8 425 aaPredicted RBP2.42□□□□□ -2.02
SRP54-204ENST00000553923 FRMD4AQ9P2Q2 1039 aaPredicted RBP2.42□□□□□ -2.02
SRP54-204ENST00000553923 GIMAP2Q9UG22 337 aa2.42□□□□□ -2.02
SRP54-204ENST00000553923 ZNF215Q9UL58 517 aaPredicted RBP2.42□□□□□ -2.02
SRP54-204ENST00000553923 TRPC5Q9UL62 973 aaPredicted RBP2.42□□□□□ -2.02
SRP54-204ENST00000553923 HSF4Q9ULV5 492 aa2.42□□□□□ -2.02
SRP54-204ENST00000553923 TBX20Q9UMR3 447 aa2.42□□□□□ -2.02
SRP54-204ENST00000553923 NFU1Q9UMS0 254 aa2.42□□□□□ -2.02
SRP54-204ENST00000553923 PCDHAC2Q9Y5I4 1007 aa2.42□□□□□ -2.02
SRP54-204ENST00000553923 TBC1D3DA0A087WVF3 549 aa2.41□□□□□ -2.02
SRP54-204ENST00000553923 TBC1D3IA0A087WXS9 549 aa2.41□□□□□ -2.02
SRP54-204ENST00000553923 TBC1D3EA0A087X179 549 aa2.41□□□□□ -2.02
SRP54-204ENST00000553923 TBC1D3KA0A087X1G2 549 aa2.41□□□□□ -2.02
SRP54-204ENST00000553923 A0A0U1RQJ8 604 aa2.41□□□□□ -2.02
SRP54-204ENST00000553923 TBC1D3BA6NDS4 549 aa2.41□□□□□ -2.02
SRP54-204ENST00000553923 TBC1D3FA6NER0 549 aaPredicted RBP2.41□□□□□ -2.02
SRP54-204ENST00000553923 TBC1D3LB9A6J9 549 aa2.41□□□□□ -2.02
SRP54-204ENST00000553923 E7EVH7 732 aa2.41□□□□□ -2.02
SRP54-204ENST00000553923 F5H0A9 414 aaPredicted RBP2.41□□□□□ -2.02
SRP54-204ENST00000553923 STX16-NPEPL1H3BU86 382 aa2.41□□□□□ -2.02
SRP54-204ENST00000553923 STX16O14662 325 aa2.41□□□□□ -2.02
SRP54-204ENST00000553923 GJB3O75712 270 aa2.41□□□□□ -2.02
SRP54-204ENST00000553923 RPP40O75818 363 aaKnown RBP2.41□□□□□ -2.02
SRP54-204ENST00000553923 SERPINI2O75830 405 aa2.41□□□□□ -2.02
SRP54-204ENST00000553923 MTA2O94776 668 aa2.41□□□□□ -2.02
SRP54-204ENST00000553923 TK1P04183 234 aa2.41□□□□□ -2.02
SRP54-204ENST00000553923 TBC1D3HP0C7X1 549 aa2.41□□□□□ -2.02
SRP54-204ENST00000553923 MYZAPP0CAP1 466 aa2.41□□□□□ -2.02
SRP54-204ENST00000553923 HSPA1AP0DMV8 641 aaKnown RBP2.41□□□□□ -2.02
SRP54-204ENST00000553923 HSPA1BP0DMV9 641 aaKnown RBP2.41□□□□□ -2.02
SRP54-204ENST00000553923 MUTP22033 750 aa2.41□□□□□ -2.02
SRP54-204ENST00000553923 KLRK1P26718 216 aa2.41□□□□□ -2.02
SRP54-204ENST00000553923 PGM1P36871 562 aa2.41□□□□□ -2.02
SRP54-204ENST00000553923 TNNT3P45378 269 aaPredicted RBP2.41□□□□□ -2.02
SRP54-204ENST00000553923 NOVP48745 357 aa2.41□□□□□ -2.02
SRP54-204ENST00000553923 HARS2P49590 506 aaKnown RBP2.41□□□□□ -2.02
SRP54-204ENST00000553923 MXI1P50539 228 aa2.41□□□□□ -2.02
SRP54-204ENST00000553923 PNLIPRP1P54315 467 aa2.41□□□□□ -2.02
SRP54-204ENST00000553923 ATP12AP54707 1039 aa2.41□□□□□ -2.02
SRP54-204ENST00000553923 VAMP2P63027 116 aa2.41□□□□□ -2.02
SRP54-204ENST00000553923 RBM6P78332 1123 aaKnown RBP2.41□□□□□ -2.02
SRP54-204ENST00000553923 RPP30P78346 268 aaKnown RBP2.41□□□□□ -2.02
SRP54-204ENST00000553923 MC1RQ01726 317 aa2.41□□□□□ -2.02
SRP54-204ENST00000553923 RNASELQ05823 741 aaKnown RBP2.41□□□□□ -2.02
SRP54-204ENST00000553923 CHRNDQ07001 517 aa2.41□□□□□ -2.02
SRP54-204ENST00000553923 TROAPQ12815 778 aa2.41□□□□□ -2.02
SRP54-204ENST00000553923 CHAF1BQ13112 559 aa2.41□□□□□ -2.02
SRP54-204ENST00000553923 MYBPHQ13203 477 aa2.41□□□□□ -2.02
SRP54-204ENST00000553923 PDCLQ13371 301 aa2.41□□□□□ -2.02
SRP54-204ENST00000553923 PRPF4BQ13523 1007 aaKnown RBP2.41□□□□□ -2.02
SRP54-204ENST00000553923 RASA2Q15283 850 aa2.41□□□□□ -2.02
SRP54-204ENST00000553923 ANKRD1Q15327 319 aa2.41□□□□□ -2.02
SRP54-204ENST00000553923 TMEM266Q2M3C6 531 aa2.41□□□□□ -2.02
SRP54-204ENST00000553923 SETMARQ53H47 684 aaPredicted RBP2.41□□□□□ -2.02
SRP54-204ENST00000553923 ZNF569Q5MCW4 686 aa2.41□□□□□ -2.02
SRP54-204ENST00000553923 LCE3EQ5T5B0 92 aa2.41□□□□□ -2.02
SRP54-204ENST00000553923 FAM69AQ5T7M9 428 aa2.41□□□□□ -2.02
SRP54-204ENST00000553923 TBC1D3GQ6DHY5 549 aa2.41□□□□□ -2.02
SRP54-204ENST00000553923 TANGO2Q6ICL3 276 aa2.41□□□□□ -2.02
SRP54-204ENST00000553923 TBC1D3CQ6IPX1 549 aa2.41□□□□□ -2.02
SRP54-204ENST00000553923 RINT1Q6NUQ1 792 aa2.41□□□□□ -2.02
SRP54-204ENST00000553923 NFRKBQ6P4R8 1299 aa2.41□□□□□ -2.02
SRP54-204ENST00000553923 SHQ1Q6PI26 577 aaKnown RBP2.41□□□□□ -2.02
SRP54-204ENST00000553923 RAB11FIP2Q7L804 512 aa2.41□□□□□ -2.02
SRP54-204ENST00000553923 GALNTL5Q7Z4T8 443 aa2.41□□□□□ -2.02
SRP54-204ENST00000553923 ARMC8Q8IUR7 673 aa2.41□□□□□ -2.02
SRP54-204ENST00000553923 SLC44A2Q8IWA5 706 aaPredicted RBP2.41□□□□□ -2.02
SRP54-204ENST00000553923 TBC1D3Q8IZP1 549 aaPredicted RBP2.41□□□□□ -2.02
SRP54-204ENST00000553923 TAGAPQ8N103 731 aa2.41□□□□□ -2.02
SRP54-204ENST00000553923 NDUFAF2Q8N183 169 aa2.41□□□□□ -2.02
SRP54-204ENST00000553923 SRBD1Q8N5C6 995 aaKnown RBP2.41□□□□□ -2.02
SRP54-204ENST00000553923 HORMAD2Q8N7B1 307 aa2.41□□□□□ -2.02
SRP54-204ENST00000553923 GOLGA6L2Q8N9W4 650 aaPredicted RBP2.41□□□□□ -2.02
SRP54-204ENST00000553923 OR6Y1Q8NGX8 325 aa2.41□□□□□ -2.02
SRP54-204ENST00000553923 MGARPQ8TDB4 240 aa2.41□□□□□ -2.02
SRP54-204ENST00000553923 EID2BQ96D98 161 aa2.41□□□□□ -2.02
SRP54-204ENST00000553923 KIF1BPQ96EK5 621 aa2.41□□□□□ -2.02
SRP54-204ENST00000553923 CCDC34Q96HJ3 373 aa2.41□□□□□ -2.02
SRP54-204ENST00000553923 ZNF333Q96JL9 665 aa2.41□□□□□ -2.02
SRP54-204ENST00000553923 DUX3Q96PT4 197 aa2.41□□□□□ -2.02
SRP54-204ENST00000553923 EPYCQ99645 322 aa2.41□□□□□ -2.02
SRP54-204ENST00000553923 TXLNGYQ9BZA5 131 aa2.41□□□□□ -2.02
SRP54-204ENST00000553923 SLC25A18Q9H1K4 315 aa2.41□□□□□ -2.02
SRP54-204ENST00000553923 PABPC3Q9H361 631 aaKnown RBP2.41□□□□□ -2.02
SRP54-204ENST00000553923 HIPK3Q9H422 1215 aa2.41□□□□□ -2.02
SRP54-204ENST00000553923 SYNCQ9H7C4 482 aa2.41□□□□□ -2.02
SRP54-204ENST00000553923 EVA1AQ9H8M9 152 aa2.41□□□□□ -2.02
SRP54-204ENST00000553923 ZWILCHQ9H900 591 aa2.41□□□□□ -2.02
SRP54-204ENST00000553923 NOD2Q9HC29 1040 aa2.41□□□□□ -2.02
SRP54-204ENST00000553923 PRDM8Q9NQV8 689 aa2.41□□□□□ -2.02
SRP54-204ENST00000553923 SEPT11Q9NVA2 429 aaKnown RBP2.41□□□□□ -2.02
SRP54-204ENST00000553923 TMEM160Q9NX00 188 aa2.41□□□□□ -2.02
SRP54-204ENST00000553923 KCND3Q9UK17 655 aa2.41□□□□□ -2.02
SRP54-204ENST00000553923 TMEM5Q9Y2B1 443 aa2.41□□□□□ -2.02
SRP54-204ENST00000553923 ZBTB1Q9Y2K1 713 aa2.41□□□□□ -2.02
SRP54-204ENST00000553923 PKP3Q9Y446 797 aa2.41□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms