RNA–Protein interactions for RNA: ENST00000549970.5

VPS29-207, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 818 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-207ENST00000549970 ENPP7Q6UWV6 458 aa16.42■□□□□ 0.22
VPS29-207ENST00000549970 NYAP1Q6ZVC0 841 aa16.42■□□□□ 0.22
VPS29-207ENST00000549970 RD3Q7Z3Z2 195 aa16.42■□□□□ 0.22
VPS29-207ENST00000549970 PLA2G15Q8NCC3 412 aa16.42■□□□□ 0.22
VPS29-207ENST00000549970 PDCD6IPQ8WUM4 868 aaKnown RBP16.42■□□□□ 0.22
VPS29-207ENST00000549970 TSACCQ96A04 125 aaPredicted RBP16.42■□□□□ 0.22
VPS29-207ENST00000549970 CLPBQ9H078 707 aa16.42■□□□□ 0.22
VPS29-207ENST00000549970 SCUBE2Q9NQ36 999 aa16.42■□□□□ 0.22
VPS29-207ENST00000549970 NCKIPSDQ9NZQ3 722 aa16.42■□□□□ 0.22
VPS29-207ENST00000549970 PCDHGC4Q9Y5F7 938 aa16.42■□□□□ 0.22
VPS29-207ENST00000549970 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP16.42■□□□□ 0.22
VPS29-207ENST00000549970 CACNA1GO43497 2377 aa16.42■□□□□ 0.22
VPS29-207ENST00000549970 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP16.41■□□□□ 0.22
VPS29-207ENST00000549970 TMEM110-MUSTN1A8MSY1 372 aa16.41■□□□□ 0.22
VPS29-207ENST00000549970 YY2O15391 372 aa16.41■□□□□ 0.22
VPS29-207ENST00000549970 TLX3O43711 291 aaPredicted RBP16.41■□□□□ 0.22
VPS29-207ENST00000549970 BRINP1O60477 761 aa16.41■□□□□ 0.22
VPS29-207ENST00000549970 MAFKO60675 156 aa16.41■□□□□ 0.22
VPS29-207ENST00000549970 CD48P09326 243 aa16.41■□□□□ 0.22
VPS29-207ENST00000549970 HSPA9P38646 679 aaKnown RBP16.41■□□□□ 0.22
VPS29-207ENST00000549970 BLKP51451 505 aa16.41■□□□□ 0.22
VPS29-207ENST00000549970 HK3P52790 923 aa16.41■□□□□ 0.22
VPS29-207ENST00000549970 MAXP61244 160 aa16.41■□□□□ 0.22
VPS29-207ENST00000549970 MTM1Q13496 603 aa16.41■□□□□ 0.22
VPS29-207ENST00000549970 HADHQ16836 314 aaKnown RBP16.41■□□□□ 0.22
VPS29-207ENST00000549970 ALG11Q2TAA5 492 aa16.41■□□□□ 0.22
VPS29-207ENST00000549970 C6orf132Q5T0Z8 1188 aa16.41■□□□□ 0.22
VPS29-207ENST00000549970 CRTC1Q6UUV9 634 aa16.41■□□□□ 0.22
VPS29-207ENST00000549970 LIPIQ6XZB0 460 aa16.41■□□□□ 0.22
VPS29-207ENST00000549970 DPPA4Q7L190 304 aa16.41■□□□□ 0.22
VPS29-207ENST00000549970 CPNE8Q86YQ8 564 aa16.41■□□□□ 0.22
VPS29-207ENST00000549970 SLC35F3Q8IY50 421 aa16.41■□□□□ 0.22
VPS29-207ENST00000549970 BBS5Q8N3I7 341 aa16.41■□□□□ 0.22
VPS29-207ENST00000549970 PGBD5Q8N414 524 aa16.41■□□□□ 0.22
VPS29-207ENST00000549970 NSMCE1Q8WV22 266 aa16.41■□□□□ 0.22
VPS29-207ENST00000549970 GLMNQ92990 594 aa16.41■□□□□ 0.22
VPS29-207ENST00000549970 TBATAQ96M53 351 aa16.41■□□□□ 0.22
VPS29-207ENST00000549970 DEPDC7Q96QD5 511 aa16.41■□□□□ 0.22
VPS29-207ENST00000549970 BOCQ9BWV1 1114 aa16.41■□□□□ 0.22
VPS29-207ENST00000549970 CTTNBP2NLQ9P2B4 639 aa16.41■□□□□ 0.22
VPS29-207ENST00000549970 B4GALT6Q9UBX8 382 aa16.41■□□□□ 0.22
VPS29-207ENST00000549970 KLQ9UEF7 1012 aa16.41■□□□□ 0.22
VPS29-207ENST00000549970 NENFQ9UMX5 172 aa16.41■□□□□ 0.22
VPS29-207ENST00000549970 DOLKQ9UPQ8 538 aa16.41■□□□□ 0.22
VPS29-207ENST00000549970 ITPR1Q14643 2758 aa16.4■□□□□ 0.22
VPS29-207ENST00000549970 RP1P56715 2156 aa16.4■□□□□ 0.22
VPS29-207ENST00000549970 A0A087WV48 116 aa16.4■□□□□ 0.22
VPS29-207ENST00000549970 EME2A4GXA9 379 aaPredicted RBP16.4■□□□□ 0.22
VPS29-207ENST00000549970 CFAP69A5D8W1 941 aa16.4■□□□□ 0.22
VPS29-207ENST00000549970 CSO75390 466 aaKnown RBP16.4■□□□□ 0.22
VPS29-207ENST00000549970 RASGRP1O95267 797 aa16.4■□□□□ 0.22
VPS29-207ENST00000549970 CTSEP14091 401 aa16.4■□□□□ 0.22
VPS29-207ENST00000549970 CR2P20023 1033 aa16.4■□□□□ 0.22
VPS29-207ENST00000549970 TGM2P21980 687 aa16.4■□□□□ 0.22
VPS29-207ENST00000549970 MMP13P45452 471 aa16.4■□□□□ 0.22
VPS29-207ENST00000549970 SRP54P61011 504 aaKnown RBP16.4■□□□□ 0.22
VPS29-207ENST00000549970 ACOX1Q15067 660 aa16.4■□□□□ 0.22
VPS29-207ENST00000549970 ELOCQ15369 112 aa16.4■□□□□ 0.22
VPS29-207ENST00000549970 PDZD3Q86UT5 571 aa16.4■□□□□ 0.22
VPS29-207ENST00000549970 FSTL5Q8N475 847 aaPredicted RBP16.4■□□□□ 0.22
VPS29-207ENST00000549970 WDR92Q96MX6 357 aa16.4■□□□□ 0.22
VPS29-207ENST00000549970 NUDCD1Q96RS6 583 aa16.4■□□□□ 0.22
VPS29-207ENST00000549970 MGME1Q9BQP7 344 aa16.4■□□□□ 0.22
VPS29-207ENST00000549970 NOD2Q9HC29 1040 aa16.4■□□□□ 0.22
VPS29-207ENST00000549970 LRP4O75096 1905 aa16.4■□□□□ 0.22
VPS29-207ENST00000549970 HTRA2O43464 458 aaPredicted RBP16.39■□□□□ 0.21
VPS29-207ENST00000549970 MFSD11O43934 449 aa16.39■□□□□ 0.21
VPS29-207ENST00000549970 SOCS5O75159 536 aa16.39■□□□□ 0.21
VPS29-207ENST00000549970 CPP00450 1065 aa16.39■□□□□ 0.21
VPS29-207ENST00000549970 ALPIP09923 528 aa16.39■□□□□ 0.21
VPS29-207ENST00000549970 GM2AP17900 193 aa16.39■□□□□ 0.21
VPS29-207ENST00000549970 IL4RP24394 825 aa16.39■□□□□ 0.21
VPS29-207ENST00000549970 RPIAP49247 311 aa16.39■□□□□ 0.21
VPS29-207ENST00000549970 TRAF2Q12933 501 aa16.39■□□□□ 0.21
VPS29-207ENST00000549970 ATP13A4Q4VNC1 1196 aa16.39■□□□□ 0.21
VPS29-207ENST00000549970 PERM1Q5SV97 790 aa16.39■□□□□ 0.21
VPS29-207ENST00000549970 MARC1Q5VT66 337 aa16.39■□□□□ 0.21
VPS29-207ENST00000549970 KCTD16Q68DU8 428 aa16.39■□□□□ 0.21
VPS29-207ENST00000549970 ESRP1Q6NXG1 681 aaKnown RBP16.39■□□□□ 0.21
VPS29-207ENST00000549970 ATL2Q8NHH9 583 aa16.39■□□□□ 0.21
VPS29-207ENST00000549970 PCDH19Q8TAB3 1148 aa16.39■□□□□ 0.21
VPS29-207ENST00000549970 CTNNBL1Q8WYA6 563 aaPredicted RBP16.39■□□□□ 0.21
VPS29-207ENST00000549970 FUBP1Q96AE4 644 aaKnown RBP16.39■□□□□ 0.21
VPS29-207ENST00000549970 PDXPQ96GD0 296 aa16.39■□□□□ 0.21
VPS29-207ENST00000549970 PACSIN1Q9BY11 444 aa16.39■□□□□ 0.21
VPS29-207ENST00000549970 NT5MQ9NPB1 228 aa16.39■□□□□ 0.21
VPS29-207ENST00000549970 SIRPGQ9P1W8 387 aa16.39■□□□□ 0.21
VPS29-207ENST00000549970 RCOR3Q9P2K3 495 aaPredicted RBP16.39■□□□□ 0.21
VPS29-207ENST00000549970 GULP1Q9UBP9 304 aa16.39■□□□□ 0.21
VPS29-207ENST00000549970 A0A1W2PQ67 120 aa16.38■□□□□ 0.21
VPS29-207ENST00000549970 CACNB4O00305 520 aaPredicted RBP16.38■□□□□ 0.21
VPS29-207ENST00000549970 USP12O75317 370 aa16.38■□□□□ 0.21
VPS29-207ENST00000549970 MAP3K6O95382 1288 aa16.38■□□□□ 0.21
VPS29-207ENST00000549970 TNFP01375 233 aa16.38■□□□□ 0.21
VPS29-207ENST00000549970 MPOP05164 745 aa16.38■□□□□ 0.21
VPS29-207ENST00000549970 H2AFZP0C0S5 128 aa16.38■□□□□ 0.21
VPS29-207ENST00000549970 HNRNPH3P31942 346 aaKnown RBP16.38■□□□□ 0.21
VPS29-207ENST00000549970 EIF2S3P41091 472 aaKnown RBP16.38■□□□□ 0.21
VPS29-207ENST00000549970 ABCG1P45844 678 aa16.38■□□□□ 0.21
VPS29-207ENST00000549970 ARSEP51690 589 aa16.38■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms