RNA–Protein interactions for RNA: ENST00000543123.1

RTN3-212, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 712 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-212ENST00000543123 CCDC173Q0VFZ6 552 aa13.2□□□□□ -0.3
RTN3-212ENST00000543123 DPYSQ14117 519 aa13.2□□□□□ -0.3
RTN3-212ENST00000543123 SPIDRQ14159 915 aa13.2□□□□□ -0.3
RTN3-212ENST00000543123 LBRQ14739 615 aaKnown RBP13.2□□□□□ -0.3
RTN3-212ENST00000543123 DPYSL2Q16555 572 aa13.2□□□□□ -0.3
RTN3-212ENST00000543123 ALG11Q2TAA5 492 aa13.2□□□□□ -0.3
RTN3-212ENST00000543123 TMCO3Q6UWJ1 677 aa13.2□□□□□ -0.3
RTN3-212ENST00000543123 ENPP7Q6UWV6 458 aa13.2□□□□□ -0.3
RTN3-212ENST00000543123 ARHGAP12Q8IWW6 846 aa13.2□□□□□ -0.3
RTN3-212ENST00000543123 ARFGAP1Q8N6T3 406 aa13.2□□□□□ -0.3
RTN3-212ENST00000543123 NPWQ8N729 165 aa13.2□□□□□ -0.3
RTN3-212ENST00000543123 ECHDC3Q96DC8 303 aa13.2□□□□□ -0.3
RTN3-212ENST00000543123 FCRL3Q96P31 734 aaPredicted RBP13.2□□□□□ -0.3
RTN3-212ENST00000543123 TCEAL2Q9H3H9 227 aaPredicted RBP13.2□□□□□ -0.3
RTN3-212ENST00000543123 PRORYQ9H606 182 aa13.2□□□□□ -0.3
RTN3-212ENST00000543123 CWC15Q9P013 229 aaKnown RBP13.2□□□□□ -0.3
RTN3-212ENST00000543123 MYO1AQ9UBC5 1043 aa13.2□□□□□ -0.3
RTN3-212ENST00000543123 KALRNO60229 2985 aa13.19□□□□□ -0.3
RTN3-212ENST00000543123 TEX51A0A1B0GUA7 166 aa13.19□□□□□ -0.3
RTN3-212ENST00000543123 A0A1W2PQJ5 194 aa13.19□□□□□ -0.3
RTN3-212ENST00000543123 TMX2-CTNND1H3BSU7 103 aa13.19□□□□□ -0.3
RTN3-212ENST00000543123 TK2O00142 265 aa13.19□□□□□ -0.3
RTN3-212ENST00000543123 PDE2AO00408 941 aaPredicted RBP13.19□□□□□ -0.3
RTN3-212ENST00000543123 TNFP01375 233 aa13.19□□□□□ -0.3
RTN3-212ENST00000543123 SCNN1BP51168 640 aa13.19□□□□□ -0.3
RTN3-212ENST00000543123 KIAA1024LP59773 190 aa13.19□□□□□ -0.3
RTN3-212ENST00000543123 TLE3Q04726 772 aa13.19□□□□□ -0.3
RTN3-212ENST00000543123 PIGHQ14442 188 aaPredicted RBP13.19□□□□□ -0.3
RTN3-212ENST00000543123 TSR1Q2NL82 804 aaKnown RBP13.19□□□□□ -0.3
RTN3-212ENST00000543123 DPPA4Q7L190 304 aa13.19□□□□□ -0.3
RTN3-212ENST00000543123 GPR155Q7Z3F1 870 aa13.19□□□□□ -0.3
RTN3-212ENST00000543123 RD3Q7Z3Z2 195 aa13.19□□□□□ -0.3
RTN3-212ENST00000543123 SPACA3Q8IXA5 215 aa13.19□□□□□ -0.3
RTN3-212ENST00000543123 ARL14Q8N4G2 192 aa13.19□□□□□ -0.3
RTN3-212ENST00000543123 ATPAF2Q8N5M1 289 aa13.19□□□□□ -0.3
RTN3-212ENST00000543123 LSM14AQ8ND56 463 aaKnown RBP13.19□□□□□ -0.3
RTN3-212ENST00000543123 PCDH19Q8TAB3 1148 aa13.19□□□□□ -0.3
RTN3-212ENST00000543123 KCNE4Q8WWG9 221 aa13.19□□□□□ -0.3
RTN3-212ENST00000543123 SPOCK2Q92563 424 aa13.19□□□□□ -0.3
RTN3-212ENST00000543123 SYN2Q92777 582 aaPredicted RBP13.19□□□□□ -0.3
RTN3-212ENST00000543123 TSACCQ96A04 125 aaPredicted RBP13.19□□□□□ -0.3
RTN3-212ENST00000543123 CCDC97Q96F63 343 aaPredicted RBP13.19□□□□□ -0.3
RTN3-212ENST00000543123 HIC2Q96JB3 615 aa13.19□□□□□ -0.3
RTN3-212ENST00000543123 CCDC3Q9BQI4 270 aa13.19□□□□□ -0.3
RTN3-212ENST00000543123 DPH1Q9BZG8 443 aa13.19□□□□□ -0.3
RTN3-212ENST00000543123 TRIM7Q9C029 511 aa13.19□□□□□ -0.3
RTN3-212ENST00000543123 CLPBQ9H078 707 aa13.19□□□□□ -0.3
RTN3-212ENST00000543123 ISCUQ9H1K1 167 aa13.19□□□□□ -0.3
RTN3-212ENST00000543123 SYNDIG1Q9H7V2 258 aa13.19□□□□□ -0.3
RTN3-212ENST00000543123 CAAP1Q9H8G2 361 aa13.19□□□□□ -0.3
RTN3-212ENST00000543123 STAU2Q9NUL3 570 aaKnown RBP eCLIP13.19□□□□□ -0.3
RTN3-212ENST00000543123 HAUS2Q9NVX0 235 aa13.19□□□□□ -0.3
RTN3-212ENST00000543123 GULP1Q9UBP9 304 aa13.19□□□□□ -0.3
RTN3-212ENST00000543123 GPR34Q9UPC5 381 aa13.19□□□□□ -0.3
RTN3-212ENST00000543123 OR1A2Q9Y585 309 aa13.19□□□□□ -0.3
RTN3-212ENST00000543123 PCDHGA8Q9Y5G5 932 aa13.19□□□□□ -0.3
RTN3-212ENST00000543123 DGKBQ9Y6T7 804 aa13.19□□□□□ -0.3
RTN3-212ENST00000543123 PTPRQQ9UMZ3 2332 aa13.18□□□□□ -0.3
RTN3-212ENST00000543123 TNFRSF10CO14798 259 aa13.18□□□□□ -0.3
RTN3-212ENST00000543123 RECQL5O94762 991 aaPredicted RBP13.18□□□□□ -0.3
RTN3-212ENST00000543123 HOXC4P09017 264 aaPredicted RBP13.18□□□□□ -0.3
RTN3-212ENST00000543123 KRT10P13645 584 aa13.18□□□□□ -0.3
RTN3-212ENST00000543123 RGRP47804 291 aa13.18□□□□□ -0.3
RTN3-212ENST00000543123 CDH6P55285 790 aa13.18□□□□□ -0.3
RTN3-212ENST00000543123 TMPRSS3P57727 454 aa13.18□□□□□ -0.3
RTN3-212ENST00000543123 NR1I3Q14994 352 aa13.18□□□□□ -0.3
RTN3-212ENST00000543123 C3orf38Q5JPI3 329 aa13.18□□□□□ -0.3
RTN3-212ENST00000543123 RALGPS1Q5JS13 557 aa13.18□□□□□ -0.3
RTN3-212ENST00000543123 E4F1Q66K89 784 aaPredicted RBP13.18□□□□□ -0.3
RTN3-212ENST00000543123 LIPIQ6XZB0 460 aa13.18□□□□□ -0.3
RTN3-212ENST00000543123 CYP4V2Q6ZWL3 525 aaPredicted RBP13.18□□□□□ -0.3
RTN3-212ENST00000543123 ZSWIM9Q86XI8 627 aa13.18□□□□□ -0.3
RTN3-212ENST00000543123 OR56A4Q8NGH8 313 aa13.18□□□□□ -0.3
RTN3-212ENST00000543123 WDR36Q8NI36 951 aaKnown RBP13.18□□□□□ -0.3
RTN3-212ENST00000543123 TEKT4Q8WW24 435 aa13.18□□□□□ -0.3
RTN3-212ENST00000543123 HSPH1Q92598 858 aa13.18□□□□□ -0.3
RTN3-212ENST00000543123 ATXN7L3BQ96GX2 97 aa13.18□□□□□ -0.3
RTN3-212ENST00000543123 CRELD1Q96HD1 420 aa13.18□□□□□ -0.3
RTN3-212ENST00000543123 NAP1L5Q96NT1 182 aaPredicted RBP13.18□□□□□ -0.3
RTN3-212ENST00000543123 RBM15Q96T37 977 aaKnown RBP eCLIP13.18□□□□□ -0.34e-7■■■□□ 16.7
RTN3-212ENST00000543123 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP13.18□□□□□ -0.3
RTN3-212ENST00000543123 WDR26Q9H7D7 661 aa13.18□□□□□ -0.3
RTN3-212ENST00000543123 SIRPGQ9P1W8 387 aa13.18□□□□□ -0.3
RTN3-212ENST00000543123 IP6K2Q9UHH9 426 aa13.18□□□□□ -0.3
RTN3-212ENST00000543123 PNMA8BQ9ULN7 279 aaPredicted RBP13.18□□□□□ -0.3
RTN3-212ENST00000543123 SATB2Q9UPW6 733 aa13.18□□□□□ -0.3
RTN3-212ENST00000543123 CCDC187A0A096LP49 1063 aa13.17□□□□□ -0.3
RTN3-212ENST00000543123 GOLGA6L19H0YKK7 550 aa13.17□□□□□ -0.3
RTN3-212ENST00000543123 TRAFD1O14545 582 aaPredicted RBP13.17□□□□□ -0.3
RTN3-212ENST00000543123 CPP00450 1065 aa13.17□□□□□ -0.3
RTN3-212ENST00000543123 PRKCGP05129 697 aa13.17□□□□□ -0.3
RTN3-212ENST00000543123 SERPING1P05155 500 aa13.17□□□□□ -0.3
RTN3-212ENST00000543123 SKILP12757 684 aa13.17□□□□□ -0.3
RTN3-212ENST00000543123 RALGDSQ12967 914 aa13.17□□□□□ -0.3
RTN3-212ENST00000543123 EIF3IQ13347 325 aaKnown RBP13.17□□□□□ -0.3
RTN3-212ENST00000543123 ACOX1Q15067 660 aa13.17□□□□□ -0.3
RTN3-212ENST00000543123 SMTNL2Q2TAL5 461 aa13.17□□□□□ -0.3
RTN3-212ENST00000543123 PERM1Q5SV97 790 aa13.17□□□□□ -0.3
RTN3-212ENST00000543123 CRTC1Q6UUV9 634 aa13.17□□□□□ -0.3
RTN3-212ENST00000543123 ARHGAP36Q6ZRI8 547 aa13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 65.5 ms