RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 PRAMEP78395 509 aa9.91□□□□□ -0.82
SS18-205ENST00000542420 CAP1Q01518 475 aa9.91□□□□□ -0.82
SS18-205ENST00000542420 CTBP1Q13363 440 aa9.91□□□□□ -0.82
SS18-205ENST00000542420 MGAT5BQ3V5L5 792 aa9.91□□□□□ -0.82
SS18-205ENST00000542420 HECTD2Q5U5R9 776 aa9.91□□□□□ -0.82
SS18-205ENST00000542420 RIPOR1Q6ZS17 1223 aa9.91□□□□□ -0.82
SS18-205ENST00000542420 MFSD6LQ8IWD5 586 aa9.91□□□□□ -0.82
SS18-205ENST00000542420 LSMEM2Q8N112 164 aa9.91□□□□□ -0.82
SS18-205ENST00000542420 ACVR1CQ8NER5 493 aa9.91□□□□□ -0.82
SS18-205ENST00000542420 WDR60Q8WVS4 1066 aa9.91□□□□□ -0.82
SS18-205ENST00000542420 NXNL1Q96CM4 212 aa9.91□□□□□ -0.82
SS18-205ENST00000542420 PABPC5Q96DU9 382 aaKnown RBP9.91□□□□□ -0.82
SS18-205ENST00000542420 IFT43Q96FT9 208 aa9.91□□□□□ -0.82
SS18-205ENST00000542420 THTPAQ9BU02 230 aa9.91□□□□□ -0.82
SS18-205ENST00000542420 UTP6Q9NYH9 597 aaKnown RBP9.91□□□□□ -0.82
SS18-205ENST00000542420 UXTQ9UBK9 157 aaPredicted RBP9.91□□□□□ -0.82
SS18-205ENST00000542420 SLC2A6Q9UGQ3 507 aa9.91□□□□□ -0.82
SS18-205ENST00000542420 STOML2Q9UJZ1 356 aa9.91□□□□□ -0.82
SS18-205ENST00000542420 LRCH1Q9Y2L9 728 aa9.91□□□□□ -0.82
SS18-205ENST00000542420 COMMD10Q9Y6G5 202 aa9.91□□□□□ -0.82
SS18-205ENST00000542420 IPO13O94829 963 aaKnown RBP9.91□□□□□ -0.82
SS18-205ENST00000542420 CLCN2P51788 898 aa9.91□□□□□ -0.82
SS18-205ENST00000542420 MTTPP55157 894 aa9.91□□□□□ -0.82
SS18-205ENST00000542420 DSC2Q02487 901 aa9.91□□□□□ -0.82
SS18-205ENST00000542420 GNA12Q03113 381 aa9.91□□□□□ -0.82
SS18-205ENST00000542420 DLG1Q12959 904 aa9.91□□□□□ -0.82
SS18-205ENST00000542420 CDC16Q13042 620 aa9.91□□□□□ -0.82
SS18-205ENST00000542420 GPNMBQ14956 572 aa9.91□□□□□ -0.82
SS18-205ENST00000542420 GSTA3Q16772 222 aa9.91□□□□□ -0.82
SS18-205ENST00000542420 USP41Q3LFD5 358 aa9.91□□□□□ -0.82
SS18-205ENST00000542420 SLC9B1Q4ZJI4 515 aa9.91□□□□□ -0.82
SS18-205ENST00000542420 NADSYN1Q6IA69 706 aa9.91□□□□□ -0.82
SS18-205ENST00000542420 RNF19BQ6ZMZ0 732 aa9.91□□□□□ -0.82
SS18-205ENST00000542420 CHSY3Q70JA7 882 aa9.91□□□□□ -0.82
SS18-205ENST00000542420 SDCCAG8Q86SQ7 713 aaPredicted RBP9.91□□□□□ -0.82
SS18-205ENST00000542420 RBM12BQ8IXT5 1001 aaKnown RBP9.91□□□□□ -0.82
SS18-205ENST00000542420 PGBD5Q8N414 524 aa9.91□□□□□ -0.82
SS18-205ENST00000542420 KDM1BQ8NB78 822 aa9.91□□□□□ -0.82
SS18-205ENST00000542420 DBF4BQ8NFT6 615 aa9.91□□□□□ -0.82
SS18-205ENST00000542420 CEP70Q8NHQ1 597 aa9.91□□□□□ -0.82
SS18-205ENST00000542420 CD99L2Q8TCZ2 262 aa9.91□□□□□ -0.82
SS18-205ENST00000542420 HEXDCQ8WVB3 486 aa9.91□□□□□ -0.82
SS18-205ENST00000542420 PANX3Q96QZ0 392 aa9.91□□□□□ -0.82
SS18-205ENST00000542420 TRIB3Q96RU7 358 aa9.91□□□□□ -0.82
SS18-205ENST00000542420 STK39Q9UEW8 545 aa9.91□□□□□ -0.82
SS18-205ENST00000542420 SCN5AQ14524 2016 aa9.91□□□□□ -0.82
SS18-205ENST00000542420 A0A1B0GVG6 124 aa9.9□□□□□ -0.82
SS18-205ENST00000542420 PFDN6O15212 129 aa9.9□□□□□ -0.82
SS18-205ENST00000542420 GLP2RO95838 553 aa9.9□□□□□ -0.82
SS18-205ENST00000542420 NCF2P19878 526 aaPredicted RBP9.9□□□□□ -0.82
SS18-205ENST00000542420 ITGAXP20702 1163 aa9.9□□□□□ -0.82
SS18-205ENST00000542420 IMPDH1P20839 514 aa9.9□□□□□ -0.82
SS18-205ENST00000542420 MPSTP25325 297 aa9.9□□□□□ -0.82
SS18-205ENST00000542420 PIK3R1P27986 724 aa9.9□□□□□ -0.82
SS18-205ENST00000542420 HOXD9P28356 352 aaPredicted RBP9.9□□□□□ -0.82
SS18-205ENST00000542420 CHRNA4P43681 627 aa9.9□□□□□ -0.82
SS18-205ENST00000542420 PSMD8P48556 350 aa9.9□□□□□ -0.82
SS18-205ENST00000542420 NAGLUP54802 743 aa9.9□□□□□ -0.82
SS18-205ENST00000542420 MRPS35P82673 323 aaKnown RBP9.9□□□□□ -0.82
SS18-205ENST00000542420 ITKQ08881 620 aa9.9□□□□□ -0.82
SS18-205ENST00000542420 USP4Q13107 963 aa9.9□□□□□ -0.82
SS18-205ENST00000542420 HECTD3Q5T447 861 aa9.9□□□□□ -0.82
SS18-205ENST00000542420 SDHAF4Q5VUM1 108 aa9.9□□□□□ -0.82
SS18-205ENST00000542420 C1orf146Q5VVC0 180 aa9.9□□□□□ -0.82
SS18-205ENST00000542420 IRGCQ6NXR0 463 aa9.9□□□□□ -0.82
SS18-205ENST00000542420 TFAP2DQ7Z6R9 452 aa9.9□□□□□ -0.82
SS18-205ENST00000542420 FBXW8Q8N3Y1 598 aa9.9□□□□□ -0.82
SS18-205ENST00000542420 FBXO22Q8NEZ5 403 aa9.9□□□□□ -0.82
SS18-205ENST00000542420 CYP2S1Q96SQ9 504 aa9.9□□□□□ -0.82
SS18-205ENST00000542420 SEPT5Q99719 369 aaPredicted RBP9.9□□□□□ -0.82
SS18-205ENST00000542420 TFB2MQ9H5Q4 396 aaKnown RBP9.9□□□□□ -0.82
SS18-205ENST00000542420 MEAF6Q9HAF1 191 aa9.9□□□□□ -0.82
SS18-205ENST00000542420 SYTL2Q9HCH5 934 aa9.9□□□□□ -0.82
SS18-205ENST00000542420 NLE1Q9NVX2 485 aaPredicted RBP9.9□□□□□ -0.82
SS18-205ENST00000542420 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP9.9□□□□□ -0.823e-6■■□□□ 11.9
SS18-205ENST00000542420 CDH22Q9UJ99 828 aa9.9□□□□□ -0.82
SS18-205ENST00000542420 NUDT5Q9UKK9 219 aa9.9□□□□□ -0.82
SS18-205ENST00000542420 TBC1D30Q9Y2I9 924 aa9.9□□□□□ -0.82
SS18-205ENST00000542420 ASB3Q9Y575 518 aa9.9□□□□□ -0.82
SS18-205ENST00000542420 A0A1B0GVM2 712 aa9.9□□□□□ -0.82
SS18-205ENST00000542420 TCAF2A6NFQ2 919 aa9.9□□□□□ -0.82
SS18-205ENST00000542420 MAP3K7O43318 606 aa9.9□□□□□ -0.82
SS18-205ENST00000542420 TBX10O75333 385 aa9.9□□□□□ -0.82
SS18-205ENST00000542420 KRT36O76013 467 aa9.9□□□□□ -0.82
SS18-205ENST00000542420 UPP2O95045 317 aa9.9□□□□□ -0.82
SS18-205ENST00000542420 ANPEPP15144 967 aa9.9□□□□□ -0.82
SS18-205ENST00000542420 CR2P20023 1033 aa9.9□□□□□ -0.82
SS18-205ENST00000542420 CPA2P48052 419 aa9.9□□□□□ -0.82
SS18-205ENST00000542420 TAF1AQ15573 450 aaPredicted RBP9.9□□□□□ -0.82
SS18-205ENST00000542420 PCSK7Q16549 785 aa9.9□□□□□ -0.82
SS18-205ENST00000542420 MUM1Q2TAK8 710 aa9.9□□□□□ -0.82
SS18-205ENST00000542420 LSM12Q3MHD2 195 aaKnown RBP9.9□□□□□ -0.82
SS18-205ENST00000542420 RTP2Q5QGT7 225 aa9.9□□□□□ -0.82
SS18-205ENST00000542420 CNSTQ6PJW8 725 aa9.9□□□□□ -0.82
SS18-205ENST00000542420 AFTPHQ6ULP2 937 aa9.9□□□□□ -0.82
SS18-205ENST00000542420 TRIM67Q6ZTA4 783 aa9.9□□□□□ -0.82
SS18-205ENST00000542420 FRMD7Q6ZUT3 714 aa9.9□□□□□ -0.82
SS18-205ENST00000542420 CHCHD4Q8N4Q1 142 aa9.9□□□□□ -0.82
SS18-205ENST00000542420 SLC25A41Q8N5S1 370 aa9.9□□□□□ -0.82
SS18-205ENST00000542420 MAPK15Q8TD08 544 aa9.9□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms