RNA–Protein interactions for RNA: ENST00000540475.5

SEMA4D-223, Transcript of semaphorin 4D, human

TSL 3

Gene SEMA4D, Length 826 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SEMA4D-223	ENST00000540475	TGM2	P21980	687 aa		13.18	□□□□□ -0.3
SEMA4D-223	ENST00000540475	AMPD1	P23109	780 aa		13.18	□□□□□ -0.3
SEMA4D-223	ENST00000540475	ARL4A	P40617	200 aa		13.18	□□□□□ -0.3
SEMA4D-223	ENST00000540475	LSS	P48449	732 aa		13.18	□□□□□ -0.3
SEMA4D-223	ENST00000540475	NR0B2	Q15466	257 aa		13.18	□□□□□ -0.3
SEMA4D-223	ENST00000540475	ALG11	Q2TAA5	492 aa		13.18	□□□□□ -0.3
SEMA4D-223	ENST00000540475	DEFB133	Q30KQ1	61 aa		13.18	□□□□□ -0.3
SEMA4D-223	ENST00000540475	FAXC	Q5TGI0	409 aa		13.18	□□□□□ -0.3
SEMA4D-223	ENST00000540475	GUSBP11	Q6P575	273 aa		13.18	□□□□□ -0.3
SEMA4D-223	ENST00000540475	LRRC49	Q8IUZ0	686 aa		13.18	□□□□□ -0.3
SEMA4D-223	ENST00000540475	SLC35F3	Q8IY50	421 aa		13.18	□□□□□ -0.3
SEMA4D-223	ENST00000540475	PGBD5	Q8N414	524 aa		13.18	□□□□□ -0.3
SEMA4D-223	ENST00000540475	TEX26	Q8N6G2	289 aa		13.18	□□□□□ -0.3
SEMA4D-223	ENST00000540475	FGF11	Q92914	225 aa		13.18	□□□□□ -0.3
SEMA4D-223	ENST00000540475	GLMN	Q92990	594 aa		13.18	□□□□□ -0.3
SEMA4D-223	ENST00000540475	NUDCD1	Q96RS6	583 aa		13.18	□□□□□ -0.3
SEMA4D-223	ENST00000540475	MGME1	Q9BQP7	344 aa		13.18	□□□□□ -0.3
SEMA4D-223	ENST00000540475	PCDH18	Q9HCL0	1135 aa		13.18	□□□□□ -0.3
SEMA4D-223	ENST00000540475	STAU2	Q9NUL3	570 aa	Known RBP eCLIP	13.18	□□□□□ -0.3
SEMA4D-223	ENST00000540475	PPIL1	Q9Y3C6	166 aa		13.18	□□□□□ -0.3
SEMA4D-223	ENST00000540475	PCDHB1	Q9Y5F3	818 aa		13.18	□□□□□ -0.3
SEMA4D-223	ENST00000540475	PTPRQ	Q9UMZ3	2332 aa		13.18	□□□□□ -0.3
SEMA4D-223	ENST00000540475	TCEA3	O75764	348 aa		13.17	□□□□□ -0.3
SEMA4D-223	ENST00000540475	RECQL5	O94762	991 aa	Predicted RBP	13.17	□□□□□ -0.3
SEMA4D-223	ENST00000540475	RASGRP1	O95267	797 aa		13.17	□□□□□ -0.3
SEMA4D-223	ENST00000540475	HOXB3	P14651	431 aa	Predicted RBP	13.17	□□□□□ -0.3
SEMA4D-223	ENST00000540475	HTR1B	P28222	390 aa		13.17	□□□□□ -0.3
SEMA4D-223	ENST00000540475	ACTN2	P35609	894 aa		13.17	□□□□□ -0.3
SEMA4D-223	ENST00000540475	RPIA	P49247	311 aa		13.17	□□□□□ -0.3
SEMA4D-223	ENST00000540475	SCNN1B	P51168	640 aa		13.17	□□□□□ -0.3
SEMA4D-223	ENST00000540475	CDH6	P55285	790 aa		13.17	□□□□□ -0.3
SEMA4D-223	ENST00000540475	KIAA1024L	P59773	190 aa		13.17	□□□□□ -0.3
SEMA4D-223	ENST00000540475	SEMG2	Q02383	582 aa		13.17	□□□□□ -0.3
SEMA4D-223	ENST00000540475	C1orf61	Q13536	156 aa		13.17	□□□□□ -0.3
SEMA4D-223	ENST00000540475	ELOC	Q15369	112 aa		13.17	□□□□□ -0.3
SEMA4D-223	ENST00000540475	CDKN3	Q16667	212 aa		13.17	□□□□□ -0.3
SEMA4D-223	ENST00000540475	ISX	Q2M1V0	245 aa		13.17	□□□□□ -0.3
SEMA4D-223	ENST00000540475	SMTNL2	Q2TAL5	461 aa		13.17	□□□□□ -0.3
SEMA4D-223	ENST00000540475	TBC1D25	Q3MII6	688 aa		13.17	□□□□□ -0.3
SEMA4D-223	ENST00000540475	TDRD12	Q587J7	1177 aa	Known RBP	13.17	□□□□□ -0.3
SEMA4D-223	ENST00000540475	CFAP58	Q5T655	872 aa		13.17	□□□□□ -0.3
SEMA4D-223	ENST00000540475	ESRP1	Q6NXG1	681 aa	Known RBP	13.17	□□□□□ -0.3
SEMA4D-223	ENST00000540475	ALKBH5	Q6P6C2	394 aa	Known RBP	13.17	□□□□□ -0.3
SEMA4D-223	ENST00000540475	TMCO3	Q6UWJ1	677 aa		13.17	□□□□□ -0.3
SEMA4D-223	ENST00000540475	EFL1	Q7Z2Z2	1120 aa	Known RBP	13.17	□□□□□ -0.3
SEMA4D-223	ENST00000540475	LSMEM2	Q8N112	164 aa		13.17	□□□□□ -0.3
SEMA4D-223	ENST00000540475	PLA2G15	Q8NCC3	412 aa		13.17	□□□□□ -0.3
SEMA4D-223	ENST00000540475	ATL2	Q8NHH9	583 aa		13.17	□□□□□ -0.3
SEMA4D-223	ENST00000540475	WDR48	Q8TAF3	677 aa		13.17	□□□□□ -0.3
SEMA4D-223	ENST00000540475	MAPK15	Q8TD08	544 aa		13.17	□□□□□ -0.3
SEMA4D-223	ENST00000540475	NAT6	Q93015	286 aa		13.17	□□□□□ -0.3
SEMA4D-223	ENST00000540475	FATE1	Q969F0	183 aa		13.17	□□□□□ -0.3
SEMA4D-223	ENST00000540475	FUBP1	Q96AE4	644 aa	Known RBP	13.17	□□□□□ -0.3
SEMA4D-223	ENST00000540475	HIC2	Q96JB3	615 aa		13.17	□□□□□ -0.3
SEMA4D-223	ENST00000540475	COQ10A	Q96MF6	247 aa		13.17	□□□□□ -0.3
SEMA4D-223	ENST00000540475	ZNF578	Q96N58	590 aa	Predicted RBP	13.17	□□□□□ -0.3
SEMA4D-223	ENST00000540475	RBM15	Q96T37	977 aa	Known RBP eCLIP	13.17	□□□□□ -0.3
SEMA4D-223	ENST00000540475	HNRNPUL1	Q9BUJ2	856 aa	Known RBP eCLIP	13.17	□□□□□ -0.3
SEMA4D-223	ENST00000540475	KCTD5	Q9NXV2	234 aa		13.17	□□□□□ -0.3
SEMA4D-223	ENST00000540475	LUC7L2	Q9Y383	392 aa	Known RBP	13.17	□□□□□ -0.3
SEMA4D-223	ENST00000540475	SCN8A	Q9UQD0	1980 aa		13.16	□□□□□ -0.3
SEMA4D-223	ENST00000540475	UNC13C	Q8NB66	2214 aa		13.16	□□□□□ -0.3
SEMA4D-223	ENST00000540475	MYO1F	O00160	1098 aa		13.16	□□□□□ -0.3
SEMA4D-223	ENST00000540475	TNFRSF10C	O14798	259 aa		13.16	□□□□□ -0.3
SEMA4D-223	ENST00000540475	CS	O75390	466 aa	Known RBP	13.16	□□□□□ -0.3
SEMA4D-223	ENST00000540475	PRKCG	P05129	697 aa		13.16	□□□□□ -0.3
SEMA4D-223	ENST00000540475	ANXA6	P08133	673 aa		13.16	□□□□□ -0.3
SEMA4D-223	ENST00000540475	ALPI	P09923	528 aa		13.16	□□□□□ -0.3
SEMA4D-223	ENST00000540475	SERPINB6	P35237	376 aa		13.16	□□□□□ -0.3
SEMA4D-223	ENST00000540475	ERVPABLB-1	P60509	514 aa		13.16	□□□□□ -0.3
SEMA4D-223	ENST00000540475	SRP54	P61011	504 aa	Known RBP	13.16	□□□□□ -0.3
SEMA4D-223	ENST00000540475	ASTE1	Q2TB18	679 aa	Predicted RBP	13.16	□□□□□ -0.3
SEMA4D-223	ENST00000540475	SOWAHC	Q53LP3	525 aa	Predicted RBP	13.16	□□□□□ -0.3
SEMA4D-223	ENST00000540475	PERM1	Q5SV97	790 aa		13.16	□□□□□ -0.3
SEMA4D-223	ENST00000540475	OGFOD3	Q6PK18	319 aa		13.16	□□□□□ -0.3
SEMA4D-223	ENST00000540475	ENPP7	Q6UWV6	458 aa		13.16	□□□□□ -0.3
SEMA4D-223	ENST00000540475	HSPH1	Q92598	858 aa		13.16	□□□□□ -0.3
SEMA4D-223	ENST00000540475	TSACC	Q96A04	125 aa	Predicted RBP	13.16	□□□□□ -0.3
SEMA4D-223	ENST00000540475	BTBD6	Q96KE9	485 aa		13.16	□□□□□ -0.3
SEMA4D-223	ENST00000540475	WDR92	Q96MX6	357 aa		13.16	□□□□□ -0.3
SEMA4D-223	ENST00000540475	NUP85	Q9BW27	656 aa		13.16	□□□□□ -0.3
SEMA4D-223	ENST00000540475	ABCG4	Q9H172	646 aa		13.16	□□□□□ -0.3
SEMA4D-223	ENST00000540475	PRORY	Q9H606	182 aa		13.16	□□□□□ -0.3
SEMA4D-223	ENST00000540475	NOD2	Q9HC29	1040 aa		13.16	□□□□□ -0.3
SEMA4D-223	ENST00000540475	ANAPC7	Q9UJX3	599 aa		13.16	□□□□□ -0.3
SEMA4D-223	ENST00000540475	PHTF1	Q9UMS5	762 aa		13.16	□□□□□ -0.3
SEMA4D-223	ENST00000540475	SSUH2	Q9Y2M2	353 aa		13.16	□□□□□ -0.3
SEMA4D-223	ENST00000540475	OR1A2	Q9Y585	309 aa		13.16	□□□□□ -0.3
SEMA4D-223	ENST00000540475	KALRN	O60229	2985 aa		13.16	□□□□□ -0.3
SEMA4D-223	ENST00000540475	ATRX	P46100	2492 aa		13.15	□□□□□ -0.3
SEMA4D-223	ENST00000540475	ZFC3H1	O60293	1989 aa	Known RBP	13.15	□□□□□ -0.3
SEMA4D-223	ENST00000540475		A0A1W2PNU3	283 aa	Predicted RBP	13.15	□□□□□ -0.3
SEMA4D-223	ENST00000540475	CPED1	A4D0V7	1026 aa		13.15	□□□□□ -0.3
SEMA4D-223	ENST00000540475	TMEM202	A6NGA9	273 aa		13.15	□□□□□ -0.3
SEMA4D-223	ENST00000540475	GOLGA6L19	H0YKK7	550 aa		13.15	□□□□□ -0.3
SEMA4D-223	ENST00000540475	NTN3	O00634	580 aa	Predicted RBP	13.15	□□□□□ -0.3
SEMA4D-223	ENST00000540475	FZD6	O60353	706 aa		13.15	□□□□□ -0.3
SEMA4D-223	ENST00000540475	CELA2B	P08218	269 aa	Predicted RBP	13.15	□□□□□ -0.3
SEMA4D-223	ENST00000540475	ELFN1	P0C7U0	828 aa		13.15	□□□□□ -0.3
SEMA4D-223	ENST00000540475	PTMS	P20962	102 aa		13.15	□□□□□ -0.3

Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms