RNA–Protein interactions for RNA: ENST00000539982.5

CLSTN3-209, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-209ENST00000539982 GBP6Q6ZN66 633 aa11.7□□□□□ -0.54
CLSTN3-209ENST00000539982 ARCQ7LC44 396 aa11.7□□□□□ -0.54
CLSTN3-209ENST00000539982 C17orf82Q86X59 251 aaPredicted RBP11.7□□□□□ -0.54
CLSTN3-209ENST00000539982 CACNA2D3Q8IZS8 1091 aa11.7□□□□□ -0.54
CLSTN3-209ENST00000539982 PLA2G15Q8NCC3 412 aa11.7□□□□□ -0.54
CLSTN3-209ENST00000539982 RCBTB1Q8NDN9 531 aa11.7□□□□□ -0.54
CLSTN3-209ENST00000539982 C9orf43Q8TAL5 461 aaPredicted RBP11.7□□□□□ -0.54
CLSTN3-209ENST00000539982 KIAA1524Q8TCG1 905 aa11.7□□□□□ -0.54
CLSTN3-209ENST00000539982 FUBP1Q96AE4 644 aaKnown RBP11.7□□□□□ -0.54
CLSTN3-209ENST00000539982 DDA1Q9BW61 102 aa11.7□□□□□ -0.54
CLSTN3-209ENST00000539982 TMEM168Q9H0V1 697 aa11.7□□□□□ -0.54
CLSTN3-209ENST00000539982 PDCL3Q9H2J4 239 aa11.7□□□□□ -0.54
CLSTN3-209ENST00000539982 PCDH12Q9NPG4 1184 aa11.7□□□□□ -0.54
CLSTN3-209ENST00000539982 MRPL40Q9NQ50 206 aaKnown RBP11.7□□□□□ -0.54
CLSTN3-209ENST00000539982 TMEM59LQ9UK28 342 aa11.7□□□□□ -0.54
CLSTN3-209ENST00000539982 CTNND2Q9UQB3 1225 aa11.7□□□□□ -0.54
CLSTN3-209ENST00000539982 DAAM1Q9Y4D1 1078 aa11.7□□□□□ -0.54
CLSTN3-209ENST00000539982 CFAP69A5D8W1 941 aa11.69□□□□□ -0.54
CLSTN3-209ENST00000539982 GOLGA6L4A6NEF3 574 aa11.69□□□□□ -0.54
CLSTN3-209ENST00000539982 RHPN2P1A8MT19 583 aa11.69□□□□□ -0.54
CLSTN3-209ENST00000539982 INSIG1O15503 277 aa11.69□□□□□ -0.54
CLSTN3-209ENST00000539982 NKX2-8O15522 239 aa11.69□□□□□ -0.54
CLSTN3-209ENST00000539982 FGFR1OPO95684 399 aaKnown RBP11.69□□□□□ -0.54
CLSTN3-209ENST00000539982 HOXC4P09017 264 aaPredicted RBP11.69□□□□□ -0.54
CLSTN3-209ENST00000539982 PON1P27169 355 aa11.69□□□□□ -0.54
CLSTN3-209ENST00000539982 CD1CP29017 333 aa11.69□□□□□ -0.54
CLSTN3-209ENST00000539982 LIMK2P53671 638 aa11.69□□□□□ -0.54
CLSTN3-209ENST00000539982 BPIFB4P59827 614 aa11.69□□□□□ -0.54
CLSTN3-209ENST00000539982 TRA2AQ13595 282 aaKnown RBP eCLIP11.69□□□□□ -0.54
CLSTN3-209ENST00000539982 NR1D2Q14995 579 aa11.69□□□□□ -0.54
CLSTN3-209ENST00000539982 EXOC3L4Q17RC7 722 aa11.69□□□□□ -0.54
CLSTN3-209ENST00000539982 ZNF438Q7Z4V0 828 aa11.69□□□□□ -0.54
CLSTN3-209ENST00000539982 ELOA2Q8IYF1 753 aaPredicted RBP11.69□□□□□ -0.54
CLSTN3-209ENST00000539982 AGBL5Q8NDL9 886 aa11.69□□□□□ -0.54
CLSTN3-209ENST00000539982 CCDC112Q8NEF3 446 aa11.69□□□□□ -0.54
CLSTN3-209ENST00000539982 CCL4L1Q8NHW4 92 aa11.69□□□□□ -0.54
CLSTN3-209ENST00000539982 PMEPA1Q969W9 287 aa11.69□□□□□ -0.54
CLSTN3-209ENST00000539982 SLC45A3Q96JT2 553 aa11.69□□□□□ -0.54
CLSTN3-209ENST00000539982 CCDC74BQ96LY2 380 aa11.69□□□□□ -0.54
CLSTN3-209ENST00000539982 NUDT22Q9BRQ3 303 aa11.69□□□□□ -0.54
CLSTN3-209ENST00000539982 ASPSCR1Q9BZE9 553 aa11.69□□□□□ -0.54
CLSTN3-209ENST00000539982 SUV39H2Q9H5I1 410 aa11.69□□□□□ -0.54
CLSTN3-209ENST00000539982 CYP4F12Q9HCS2 524 aa11.69□□□□□ -0.54
CLSTN3-209ENST00000539982 FGF22Q9HCT0 170 aa11.69□□□□□ -0.54
CLSTN3-209ENST00000539982 PLAAQ9Y263 795 aa11.69□□□□□ -0.54
CLSTN3-209ENST00000539982 B3GALT1Q9Y5Z6 326 aa11.69□□□□□ -0.54
CLSTN3-209ENST00000539982 NBPF19A0A087WUL8 3843 aa11.68□□□□□ -0.54
CLSTN3-209ENST00000539982 TSPAN11A1L157 253 aa11.68□□□□□ -0.54
CLSTN3-209ENST00000539982 GTPBP10A4D1E9 387 aaKnown RBP11.68□□□□□ -0.54
CLSTN3-209ENST00000539982 FAM72CH0Y354 149 aa11.68□□□□□ -0.54
CLSTN3-209ENST00000539982 GOLGA8SH3BPF8 625 aa11.68□□□□□ -0.54
CLSTN3-209ENST00000539982 LRIG2O94898 1065 aa11.68□□□□□ -0.54
CLSTN3-209ENST00000539982 PIGNO95427 931 aa11.68□□□□□ -0.54
CLSTN3-209ENST00000539982 FGF1P05230 155 aa11.68□□□□□ -0.54
CLSTN3-209ENST00000539982 TRIM23P36406 574 aa11.68□□□□□ -0.54
CLSTN3-209ENST00000539982 STAT1P42224 750 aa11.68□□□□□ -0.54
CLSTN3-209ENST00000539982 GPR3P46089 330 aa11.68□□□□□ -0.54
CLSTN3-209ENST00000539982 CD97P48960 835 aa11.68□□□□□ -0.54
CLSTN3-209ENST00000539982 ATP11AP98196 1134 aa11.68□□□□□ -0.54
CLSTN3-209ENST00000539982 SQSTM1Q13501 440 aa11.68□□□□□ -0.54
CLSTN3-209ENST00000539982 GRM3Q14832 879 aa11.68□□□□□ -0.54
CLSTN3-209ENST00000539982 TSR1Q2NL82 804 aaKnown RBP11.68□□□□□ -0.54
CLSTN3-209ENST00000539982 FAM72AQ5TYM5 149 aa11.68□□□□□ -0.54
CLSTN3-209ENST00000539982 FAM72DQ6L9T8 149 aa11.68□□□□□ -0.54
CLSTN3-209ENST00000539982 FAM72BQ86X60 149 aa11.68□□□□□ -0.54
CLSTN3-209ENST00000539982 ZNF354CQ86Y25 554 aa11.68□□□□□ -0.54
CLSTN3-209ENST00000539982 FAM71AQ8IYT1 594 aa11.68□□□□□ -0.54
CLSTN3-209ENST00000539982 NETO2Q8NC67 525 aa11.68□□□□□ -0.54
CLSTN3-209ENST00000539982 OR4D9Q8NGE8 314 aa11.68□□□□□ -0.54
CLSTN3-209ENST00000539982 ART4Q93070 314 aa11.68□□□□□ -0.54
CLSTN3-209ENST00000539982 MIB2Q96AX9 1013 aa11.68□□□□□ -0.54
CLSTN3-209ENST00000539982 TBC1D31Q96DN5 1066 aa11.68□□□□□ -0.54
CLSTN3-209ENST00000539982 ABHD17AQ96GS6 310 aa11.68□□□□□ -0.54
CLSTN3-209ENST00000539982 ZNF641Q96N77 438 aaPredicted RBP11.68□□□□□ -0.54
CLSTN3-209ENST00000539982 NCAPGQ9BPX3 1015 aa11.68□□□□□ -0.54
CLSTN3-209ENST00000539982 MAGEB5Q9BZ81 275 aa11.68□□□□□ -0.54
CLSTN3-209ENST00000539982 SPATS2LQ9NUQ6 558 aaKnown RBP11.68□□□□□ -0.54
CLSTN3-209ENST00000539982 SLC39A1Q9NY26 324 aa11.68□□□□□ -0.54
CLSTN3-209ENST00000539982 DNAJC12Q9UKB3 198 aa11.68□□□□□ -0.54
CLSTN3-209ENST00000539982 UNC79Q9P2D8 2635 aa11.68□□□□□ -0.54
CLSTN3-209ENST00000539982 PDE2AO00408 941 aaPredicted RBP11.67□□□□□ -0.54
CLSTN3-209ENST00000539982 RAD1O60671 282 aa11.67□□□□□ -0.54
CLSTN3-209ENST00000539982 RECQL5O94762 991 aaPredicted RBP11.67□□□□□ -0.54
CLSTN3-209ENST00000539982 PLEKP08567 350 aaPredicted RBP11.67□□□□□ -0.54
CLSTN3-209ENST00000539982 CCNB1P14635 433 aa11.67□□□□□ -0.54
CLSTN3-209ENST00000539982 CSTF2P33240 577 aaKnown RBP eCLIP11.67□□□□□ -0.54
CLSTN3-209ENST00000539982 MMP12P39900 470 aa11.67□□□□□ -0.54
CLSTN3-209ENST00000539982 MAZP56270 477 aaKnown RBP11.67□□□□□ -0.54
CLSTN3-209ENST00000539982 KLRB1Q12918 225 aa11.67□□□□□ -0.54
CLSTN3-209ENST00000539982 PAK1Q13153 545 aa11.67□□□□□ -0.54
CLSTN3-209ENST00000539982 CYTH1Q15438 398 aa11.67□□□□□ -0.54
CLSTN3-209ENST00000539982 RAB6CQ53S08 254 aa11.67□□□□□ -0.54
CLSTN3-209ENST00000539982 C2CD6Q53TS8 623 aa11.67□□□□□ -0.54
CLSTN3-209ENST00000539982 DCAF12Q5T6F0 453 aa11.67□□□□□ -0.54
CLSTN3-209ENST00000539982 BRAT1Q6PJG6 821 aa11.67□□□□□ -0.54
CLSTN3-209ENST00000539982 ATCAYQ86WG3 371 aa11.67□□□□□ -0.54
CLSTN3-209ENST00000539982 DNAAF5Q86Y56 855 aa11.67□□□□□ -0.54
CLSTN3-209ENST00000539982 CREBRFQ8IUR6 639 aa11.67□□□□□ -0.54
CLSTN3-209ENST00000539982 ZDHHC1Q8WTX9 485 aa11.67□□□□□ -0.54
CLSTN3-209ENST00000539982 APOBEC4Q8WW27 367 aaKnown RBP11.67□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms