RNA–Protein interactions for RNA: ENST00000537706.5

USP28-205, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 1,900 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-205ENST00000537706 PANK2Q9BZ23 570 aa9.21□□□□□ -0.93
USP28-205ENST00000537706 CUEDC2Q9H467 287 aa9.21□□□□□ -0.93
USP28-205ENST00000537706 ZSCAN16Q9H4T2 348 aaPredicted RBP9.21□□□□□ -0.93
USP28-205ENST00000537706 STN1Q9H668 368 aaKnown RBP9.21□□□□□ -0.93
USP28-205ENST00000537706 GPR83Q9NYM4 423 aa9.21□□□□□ -0.93
USP28-205ENST00000537706 TMEM9Q9P0T7 183 aa9.21□□□□□ -0.93
USP28-205ENST00000537706 USP25Q9UHP3 1055 aa9.21□□□□□ -0.93
USP28-205ENST00000537706 RP1L1Q8IWN7 2480 aaPredicted RBP9.21□□□□□ -0.93
USP28-205ENST00000537706 BHMG1C9JSJ3 638 aaPredicted RBP9.21□□□□□ -0.94
USP28-205ENST00000537706 NDUFA10O95299 355 aa9.21□□□□□ -0.94
USP28-205ENST00000537706 FGF1P05230 155 aa9.21□□□□□ -0.94
USP28-205ENST00000537706 C8BP07358 591 aa9.21□□□□□ -0.94
USP28-205ENST00000537706 HTR1EP28566 365 aa9.21□□□□□ -0.94
USP28-205ENST00000537706 GLRBP48167 497 aa9.21□□□□□ -0.94
USP28-205ENST00000537706 GCLMP48507 274 aa9.21□□□□□ -0.94
USP28-205ENST00000537706 GEMIN4P57678 1058 aaKnown RBP9.21□□□□□ -0.94
USP28-205ENST00000537706 SNRPD1P62314 119 aaKnown RBP9.21□□□□□ -0.94
USP28-205ENST00000537706 CDK17Q00537 523 aa9.21□□□□□ -0.94
USP28-205ENST00000537706 WSCD2Q2TBF2 565 aa9.21□□□□□ -0.94
USP28-205ENST00000537706 WDR74Q6RFH5 385 aaPredicted RBP9.21□□□□□ -0.94
USP28-205ENST00000537706 BNC2Q6ZN30 1099 aaPredicted RBP9.21□□□□□ -0.94
USP28-205ENST00000537706 ARHGAP22Q7Z5H3 698 aa9.21□□□□□ -0.94
USP28-205ENST00000537706 SYVN1Q86TM6 617 aa9.21□□□□□ -0.94
USP28-205ENST00000537706 SFTPA2Q8IWL1 248 aa9.21□□□□□ -0.94
USP28-205ENST00000537706 CHDHQ8NE62 594 aaPredicted RBP9.21□□□□□ -0.94
USP28-205ENST00000537706 CLEC4CQ8WTT0 213 aa9.21□□□□□ -0.94
USP28-205ENST00000537706 UBE2Q2Q8WVN8 375 aa9.21□□□□□ -0.94
USP28-205ENST00000537706 TM9SF4Q92544 642 aa9.21□□□□□ -0.94
USP28-205ENST00000537706 KLHL32Q96NJ5 620 aa9.21□□□□□ -0.94
USP28-205ENST00000537706 SPON2Q9BUD6 331 aa9.21□□□□□ -0.94
USP28-205ENST00000537706 GPR87Q9BY21 358 aa9.21□□□□□ -0.94
USP28-205ENST00000537706 MMRN2Q9H8L6 949 aa9.21□□□□□ -0.94
USP28-205ENST00000537706 SPATS2LQ9NUQ6 558 aaKnown RBP9.21□□□□□ -0.94
USP28-205ENST00000537706 TAAR2Q9P1P5 351 aa9.21□□□□□ -0.94
USP28-205ENST00000537706 B3GNT3Q9Y2A9 372 aa9.21□□□□□ -0.94
USP28-205ENST00000537706 CELSR2Q9HCU4 2923 aa9.2□□□□□ -0.94
USP28-205ENST00000537706 FAM221AA4D161 298 aa9.2□□□□□ -0.94
USP28-205ENST00000537706 TMEM200CA6NKL6 621 aa9.2□□□□□ -0.94
USP28-205ENST00000537706 RASA4BC9J798 803 aa9.2□□□□□ -0.94
USP28-205ENST00000537706 GOLGA6L22H0YM25 854 aa9.2□□□□□ -0.94
USP28-205ENST00000537706 M0QYV0 167 aa9.2□□□□□ -0.94
USP28-205ENST00000537706 KRIT1O00522 736 aa9.2□□□□□ -0.94
USP28-205ENST00000537706 RASA4O43374 803 aa9.2□□□□□ -0.94
USP28-205ENST00000537706 GRID2O43424 1007 aa9.2□□□□□ -0.94
USP28-205ENST00000537706 KIAA0754O94854 1291 aa9.2□□□□□ -0.94
USP28-205ENST00000537706 POP4O95707 220 aaKnown RBP9.2□□□□□ -0.94
USP28-205ENST00000537706 UGT2B4P06133 528 aa9.2□□□□□ -0.94
USP28-205ENST00000537706 BMP6P22004 513 aa9.2□□□□□ -0.94
USP28-205ENST00000537706 ACADSBP45954 432 aa9.2□□□□□ -0.94
USP28-205ENST00000537706 RRADP55042 308 aa9.2□□□□□ -0.94
USP28-205ENST00000537706 PPP2R2AP63151 447 aa9.2□□□□□ -0.94
USP28-205ENST00000537706 ADAM9Q13443 819 aa9.2□□□□□ -0.94
USP28-205ENST00000537706 PLEKHN1Q494U1 663 aaPredicted RBP9.2□□□□□ -0.94
USP28-205ENST00000537706 TMEM52BQ4KMG9 183 aa9.2□□□□□ -0.94
USP28-205ENST00000537706 ANKRD40Q6AI12 368 aa9.2□□□□□ -0.94
USP28-205ENST00000537706 PMF1Q6P1K2 205 aa9.2□□□□□ -0.94
USP28-205ENST00000537706 FOXR2Q6PJQ5 311 aa9.2□□□□□ -0.94
USP28-205ENST00000537706 LCLAT1Q6UWP7 414 aa9.2□□□□□ -0.94
USP28-205ENST00000537706 LRRC31Q6UY01 552 aa9.2□□□□□ -0.94
USP28-205ENST00000537706 UNC13DQ70J99 1090 aa9.2□□□□□ -0.94
USP28-205ENST00000537706 INTS8Q75QN2 995 aaKnown RBP9.2□□□□□ -0.94
USP28-205ENST00000537706 PARP9Q8IXQ6 854 aa9.2□□□□□ -0.94
USP28-205ENST00000537706 FAM186BQ8IYM0 893 aa9.2□□□□□ -0.94
USP28-205ENST00000537706 ISG20Q96AZ6 181 aaKnown RBP9.2□□□□□ -0.94
USP28-205ENST00000537706 TRIM8Q9BZR9 551 aa9.2□□□□□ -0.94
USP28-205ENST00000537706 ACTL8Q9H568 366 aa9.2□□□□□ -0.94
USP28-205ENST00000537706 POPDC2Q9HBU9 364 aa9.2□□□□□ -0.94
USP28-205ENST00000537706 TMEM8AQ9HCN3 771 aa9.2□□□□□ -0.94
USP28-205ENST00000537706 DMAC2Q9NW81 257 aa9.2□□□□□ -0.94
USP28-205ENST00000537706 LNPEPQ9UIQ6 1025 aa9.2□□□□□ -0.94
USP28-205ENST00000537706 SRPRBQ9Y5M8 271 aaKnown RBP9.2□□□□□ -0.94
USP28-205ENST00000537706 CENPEQ02224 2701 aa9.2□□□□□ -0.94
USP28-205ENST00000537706 O00370 1275 aa9.19□□□□□ -0.94
USP28-205ENST00000537706 MAPK13O15264 365 aa9.19□□□□□ -0.94
USP28-205ENST00000537706 CEACAM4O75871 244 aa9.19□□□□□ -0.94
USP28-205ENST00000537706 GSRP00390 522 aa9.19□□□□□ -0.94
USP28-205ENST00000537706 ALPPP05187 535 aa9.19□□□□□ -0.94
USP28-205ENST00000537706 HOXC4P09017 264 aaPredicted RBP9.19□□□□□ -0.94
USP28-205ENST00000537706 ART1P52961 327 aa9.19□□□□□ -0.94
USP28-205ENST00000537706 PDE1BQ01064 536 aa9.19□□□□□ -0.94
USP28-205ENST00000537706 SRSF11Q05519 484 aaKnown RBP9.19□□□□□ -0.94
USP28-205ENST00000537706 ZNF630Q2M218 657 aaPredicted RBP9.19□□□□□ -0.94
USP28-205ENST00000537706 KRT39Q6A163 491 aa9.19□□□□□ -0.94
USP28-205ENST00000537706 MTFR2Q6P444 385 aa9.19□□□□□ -0.94
USP28-205ENST00000537706 GDPD4Q6W3E5 623 aa9.19□□□□□ -0.94
USP28-205ENST00000537706 ZNF783Q6ZMS7 281 aa9.19□□□□□ -0.94
USP28-205ENST00000537706 FJX1Q86VR8 437 aa9.19□□□□□ -0.94
USP28-205ENST00000537706 CCL4L1Q8NHW4 92 aa9.19□□□□□ -0.94
USP28-205ENST00000537706 SPATA3Q8NHX4 192 aa9.19□□□□□ -0.94
USP28-205ENST00000537706 CT55Q8WUE5 264 aa9.19□□□□□ -0.94
USP28-205ENST00000537706 SLC35F5Q8WV83 523 aa9.19□□□□□ -0.94
USP28-205ENST00000537706 NCSTNQ92542 709 aa9.19□□□□□ -0.94
USP28-205ENST00000537706 TMUB1Q9BVT8 246 aa9.19□□□□□ -0.94
USP28-205ENST00000537706 TM6SF2Q9BZW4 377 aa9.19□□□□□ -0.94
USP28-205ENST00000537706 CARS2Q9HA77 564 aaKnown RBP9.19□□□□□ -0.94
USP28-205ENST00000537706 FGF22Q9HCT0 170 aa9.19□□□□□ -0.94
USP28-205ENST00000537706 ATP13A1Q9HD20 1204 aa9.19□□□□□ -0.94
USP28-205ENST00000537706 SLC39A2Q9NP94 309 aa9.19□□□□□ -0.94
USP28-205ENST00000537706 ZFHX3Q15911 3703 aa9.19□□□□□ -0.94
USP28-205ENST00000537706 SYNJ2BP-COX16A0A087WUM0 186 aa9.19□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms