RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 CCDC162PA2VCL2 907 aa20.79■□□□□ 0.92
VPS28-209ENST00000528142 K7ERQ8 282 aa20.79■□□□□ 0.92
VPS28-209ENST00000528142 CRTAMO95727 393 aa20.79■□□□□ 0.92
VPS28-209ENST00000528142 GOT2P00505 430 aaKnown RBP20.79■□□□□ 0.92
VPS28-209ENST00000528142 SERPINE1P05121 402 aa20.79■□□□□ 0.92
VPS28-209ENST00000528142 CLCN5P51795 746 aa20.79■□□□□ 0.92
VPS28-209ENST00000528142 ZNF140P52738 457 aaPredicted RBP20.79■□□□□ 0.92
VPS28-209ENST00000528142 BNIP1Q12981 228 aa20.79■□□□□ 0.92
VPS28-209ENST00000528142 TAF1AQ15573 450 aaPredicted RBP20.79■□□□□ 0.92
VPS28-209ENST00000528142 RBM20Q5T481 1227 aaKnown RBP20.79■□□□□ 0.92
VPS28-209ENST00000528142 RETSATQ6NUM9 610 aa20.79■□□□□ 0.92
VPS28-209ENST00000528142 PNPLA1Q8N8W4 532 aa20.79■□□□□ 0.92
VPS28-209ENST00000528142 GPATCH11Q8N954 259 aa20.79■□□□□ 0.92
VPS28-209ENST00000528142 LPCAT1Q8NF37 534 aa20.79■□□□□ 0.92
VPS28-209ENST00000528142 MDGA1Q8NFP4 955 aa20.79■□□□□ 0.92
VPS28-209ENST00000528142 USP13Q92995 863 aaPredicted RBP20.79■□□□□ 0.92
VPS28-209ENST00000528142 ACDQ96AP0 544 aa20.79■□□□□ 0.92
VPS28-209ENST00000528142 NLE1Q9NVX2 485 aaPredicted RBP20.79■□□□□ 0.92
VPS28-209ENST00000528142 SOBPA7XYQ1 873 aa20.78■□□□□ 0.92
VPS28-209ENST00000528142 CA3P07451 260 aa20.78■□□□□ 0.92
VPS28-209ENST00000528142 HNRNPA1P09651 372 aaKnown RBP eCLIP20.78■□□□□ 0.92
VPS28-209ENST00000528142 CD70P32970 193 aa20.78■□□□□ 0.92
VPS28-209ENST00000528142 PBX2P40425 430 aa20.78■□□□□ 0.92
VPS28-209ENST00000528142 PLK1P53350 603 aa20.78■□□□□ 0.92
VPS28-209ENST00000528142 LDB1Q86U70 411 aaPredicted RBP20.78■□□□□ 0.92
VPS28-209ENST00000528142 KCTD4Q8WVF5 259 aa20.78■□□□□ 0.92
VPS28-209ENST00000528142 GPR78Q96P69 363 aa20.78■□□□□ 0.92
VPS28-209ENST00000528142 SMIM14Q96QK8 99 aa20.78■□□□□ 0.92
VPS28-209ENST00000528142 ADGRE3Q9BY15 652 aa20.78■□□□□ 0.92
VPS28-209ENST00000528142 INTS6Q9UL03 887 aaKnown RBP20.78■□□□□ 0.92
VPS28-209ENST00000528142 ANKRD66B4E2M5 251 aa20.78■□□□□ 0.92
VPS28-209ENST00000528142 FZD6O60353 706 aa20.78■□□□□ 0.92
VPS28-209ENST00000528142 DCTN3O75935 186 aa20.78■□□□□ 0.92
VPS28-209ENST00000528142 SBK3P0C264 359 aa20.78■□□□□ 0.92
VPS28-209ENST00000528142 ZNF460Q14592 562 aa20.78■□□□□ 0.92
VPS28-209ENST00000528142 PLEKHG6Q3KR16 790 aa20.78■□□□□ 0.92
VPS28-209ENST00000528142 ARHGAP15Q53QZ3 475 aa20.78■□□□□ 0.92
VPS28-209ENST00000528142 PRSS36Q5K4E3 855 aa20.78■□□□□ 0.92
VPS28-209ENST00000528142 ATXN7L2Q5T6C5 722 aaPredicted RBP20.78■□□□□ 0.92
VPS28-209ENST00000528142 LEMD2Q8NC56 503 aa20.78■□□□□ 0.92
VPS28-209ENST00000528142 PPP1R14CQ8TAE6 165 aa20.78■□□□□ 0.92
VPS28-209ENST00000528142 CDKN2AIPNLQ96HQ2 116 aa20.78■□□□□ 0.92
VPS28-209ENST00000528142 LRRC37BQ96QE4 947 aa20.78■□□□□ 0.92
VPS28-209ENST00000528142 A0A0G2JND7 137 aa20.77■□□□□ 0.92
VPS28-209ENST00000528142 TNRC18O15417 2968 aaPredicted RBP20.77■□□□□ 0.92
VPS28-209ENST00000528142 SMAD6O43541 496 aaKnown RBP20.77■□□□□ 0.92
VPS28-209ENST00000528142 ITM2AO43736 263 aa20.77■□□□□ 0.92
VPS28-209ENST00000528142 GLP2RO95838 553 aa20.77■□□□□ 0.92
VPS28-209ENST00000528142 APOA4P06727 396 aa20.77■□□□□ 0.92
VPS28-209ENST00000528142 RALBP11234 206 aa20.77■□□□□ 0.92
VPS28-209ENST00000528142 GRK2P25098 689 aa20.77■□□□□ 0.92
VPS28-209ENST00000528142 MAGEA9P43362 315 aa20.77■□□□□ 0.92
VPS28-209ENST00000528142 ARFIP2P53365 341 aa20.77■□□□□ 0.92
VPS28-209ENST00000528142 DLG1Q12959 904 aa20.77■□□□□ 0.92
VPS28-209ENST00000528142 NDNQ99608 321 aa20.77■□□□□ 0.92
VPS28-209ENST00000528142 OLFM1Q99784 485 aa20.77■□□□□ 0.92
VPS28-209ENST00000528142 GDF15Q99988 308 aa20.77■□□□□ 0.92
VPS28-209ENST00000528142 MYLK2Q9H1R3 596 aa20.77■□□□□ 0.92
VPS28-209ENST00000528142 RUVBL2Q9Y230 463 aaKnown RBP20.77■□□□□ 0.92
VPS28-209ENST00000528142 A0A087X1B8 175 aa20.76■□□□□ 0.91
VPS28-209ENST00000528142 TARM1B6A8C7 271 aa20.76■□□□□ 0.91
VPS28-209ENST00000528142 HGSO14964 777 aaPredicted RBP20.76■□□□□ 0.91
VPS28-209ENST00000528142 CD3EAPO15446 510 aaKnown RBP20.76■□□□□ 0.91
VPS28-209ENST00000528142 CYBBP04839 570 aa20.76■□□□□ 0.91
VPS28-209ENST00000528142 SLC8A1P32418 973 aa20.76■□□□□ 0.91
VPS28-209ENST00000528142 SLC1A6P48664 564 aa20.76■□□□□ 0.91
VPS28-209ENST00000528142 AP1S1P61966 158 aa20.76■□□□□ 0.91
VPS28-209ENST00000528142 NTHL1P78549 312 aa20.76■□□□□ 0.91
VPS28-209ENST00000528142 SEMA3AQ14563 771 aa20.76■□□□□ 0.91
VPS28-209ENST00000528142 SETDB1Q15047 1291 aa20.76■□□□□ 0.91
VPS28-209ENST00000528142 ATG14Q6ZNE5 492 aa20.76■□□□□ 0.91
VPS28-209ENST00000528142 GLT6D1Q7Z4J2 308 aa20.76■□□□□ 0.91
VPS28-209ENST00000528142 CRLF3Q8IUI8 442 aa20.76■□□□□ 0.91
VPS28-209ENST00000528142 RDH11Q8TC12 318 aa20.76■□□□□ 0.91
VPS28-209ENST00000528142 TMEM120AQ9BXJ8 343 aa20.76■□□□□ 0.91
VPS28-209ENST00000528142 ABCB8Q9NUT2 735 aa20.76■□□□□ 0.91
VPS28-209ENST00000528142 TDP1Q9NUW8 608 aa20.76■□□□□ 0.91
VPS28-209ENST00000528142 MTCL1Q9Y4B5 1905 aaKnown RBP20.76■□□□□ 0.91
VPS28-209ENST00000528142 CXorf51AA0A1B0GTR3 108 aa20.76■□□□□ 0.91
VPS28-209ENST00000528142 PALM2-AKAP2B1ALY0 433 aaPredicted RBP20.76■□□□□ 0.91
VPS28-209ENST00000528142 XYLBO75191 536 aa20.76■□□□□ 0.91
VPS28-209ENST00000528142 KLHL2O95198 593 aa20.76■□□□□ 0.91
VPS28-209ENST00000528142 ITGA9Q13797 1035 aa20.76■□□□□ 0.91
VPS28-209ENST00000528142 HSF5Q4G112 596 aaPredicted RBP20.76■□□□□ 0.91
VPS28-209ENST00000528142 HECTD2Q5U5R9 776 aa20.76■□□□□ 0.91
VPS28-209ENST00000528142 MRNIPQ6NTE8 343 aa20.76■□□□□ 0.91
VPS28-209ENST00000528142 ARID3BQ8IVW6 561 aaPredicted RBP20.76■□□□□ 0.91
VPS28-209ENST00000528142 OR4K2Q8NGD2 314 aa20.76■□□□□ 0.91
VPS28-209ENST00000528142 OR4L1Q8NH43 312 aa20.76■□□□□ 0.91
VPS28-209ENST00000528142 NXNL1Q96CM4 212 aa20.76■□□□□ 0.91
VPS28-209ENST00000528142 ERP27Q96DN0 273 aa20.76■□□□□ 0.91
VPS28-209ENST00000528142 TSNARE1Q96NA8 513 aa20.76■□□□□ 0.91
VPS28-209ENST00000528142 MID2Q9UJV3 735 aa20.76■□□□□ 0.91
VPS28-209ENST00000528142 VWA7Q9Y334 891 aa20.76■□□□□ 0.91
VPS28-209ENST00000528142 NUMBLQ9Y6R0 609 aa20.76■□□□□ 0.91
VPS28-209ENST00000528142 MYO7AQ13402 2215 aa20.75■□□□□ 0.91
VPS28-209ENST00000528142 C2orf81A6NN90 581 aa20.75■□□□□ 0.91
VPS28-209ENST00000528142 DNAJC6O75061 913 aa20.75■□□□□ 0.91
VPS28-209ENST00000528142 LYPLA1O75608 230 aaPredicted RBP20.75■□□□□ 0.91
VPS28-209ENST00000528142 DNAJC8O75937 253 aaPredicted RBP20.75■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms