RNA–Protein interactions for RNA: ENST00000527827.1

CPSF1-202, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 619 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-202ENST00000527827 ATP8A1Q9Y2Q0 1164 aa23.72■■□□□ 1.39
CPSF1-202ENST00000527827 RPL7AP62424 266 aaKnown RBP23.71■■□□□ 1.39
CPSF1-202ENST00000527827 ZFP36L1Q07352 338 aaKnown RBP23.71■■□□□ 1.39
CPSF1-202ENST00000527827 RALGDSQ12967 914 aa23.71■■□□□ 1.39
CPSF1-202ENST00000527827 CDKAL1Q5VV42 579 aa23.71■■□□□ 1.39
CPSF1-202ENST00000527827 Q8N9G6 341 aaPredicted RBP23.71■■□□□ 1.39
CPSF1-202ENST00000527827 FUBP1Q96AE4 644 aaKnown RBP23.71■■□□□ 1.39
CPSF1-202ENST00000527827 TUBGCP5Q96RT8 1024 aa23.71■■□□□ 1.39
CPSF1-202ENST00000527827 CLMPQ9H6B4 373 aa23.71■■□□□ 1.39
CPSF1-202ENST00000527827 FGF22Q9HCT0 170 aa23.71■■□□□ 1.39
CPSF1-202ENST00000527827 LOXL2Q9Y4K0 774 aa23.71■■□□□ 1.39
CPSF1-202ENST00000527827 TMEM202A6NGA9 273 aa23.7■■□□□ 1.38
CPSF1-202ENST00000527827 NVLO15381 856 aaKnown RBP23.7■■□□□ 1.38
CPSF1-202ENST00000527827 FGF10O15520 208 aaPredicted RBP23.7■■□□□ 1.38
CPSF1-202ENST00000527827 PRAMEF11O60813 436 aa23.7■■□□□ 1.38
CPSF1-202ENST00000527827 JMJD7P0C870 316 aa23.7■■□□□ 1.38
CPSF1-202ENST00000527827 GLB1P16278 677 aa23.7■■□□□ 1.38
CPSF1-202ENST00000527827 ITIH1P19827 911 aa23.7■■□□□ 1.38
CPSF1-202ENST00000527827 AIF1P55008 147 aa23.7■■□□□ 1.38
CPSF1-202ENST00000527827 KIAA1024LP59773 190 aa23.7■■□□□ 1.38
CPSF1-202ENST00000527827 PPP1R15BQ5SWA1 713 aa23.7■■□□□ 1.38
CPSF1-202ENST00000527827 CERCAMQ5T4B2 595 aa23.7■■□□□ 1.38
CPSF1-202ENST00000527827 DNAJC24Q6P3W2 148 aa23.7■■□□□ 1.38
CPSF1-202ENST00000527827 OR56A4Q8NGH8 313 aa23.7■■□□□ 1.38
CPSF1-202ENST00000527827 ENOX1Q8TC92 643 aaKnown RBP23.7■■□□□ 1.38
CPSF1-202ENST00000527827 MCEEQ96PE7 176 aa23.7■■□□□ 1.38
CPSF1-202ENST00000527827 NUP62CLQ9H1M0 184 aa23.7■■□□□ 1.38
CPSF1-202ENST00000527827 MRPL40Q9NQ50 206 aaKnown RBP23.7■■□□□ 1.38
CPSF1-202ENST00000527827 GTF3C3Q9Y5Q9 886 aa23.7■■□□□ 1.38
CPSF1-202ENST00000527827 CFAP69A5D8W1 941 aa23.69■■□□□ 1.38
CPSF1-202ENST00000527827 CYSRT1A8MQ03 144 aa23.69■■□□□ 1.38
CPSF1-202ENST00000527827 RECQL5O94762 991 aaPredicted RBP23.69■■□□□ 1.38
CPSF1-202ENST00000527827 LIPCP11150 499 aa23.69■■□□□ 1.38
CPSF1-202ENST00000527827 PNLIPP16233 465 aa23.69■■□□□ 1.38
CPSF1-202ENST00000527827 CSNK1DP48730 415 aa23.69■■□□□ 1.38
CPSF1-202ENST00000527827 NDST2P52849 883 aa23.69■■□□□ 1.38
CPSF1-202ENST00000527827 CFAP58Q5T655 872 aa23.69■■□□□ 1.38
CPSF1-202ENST00000527827 USP53Q70EK8 1073 aa23.69■■□□□ 1.38
CPSF1-202ENST00000527827 TAF8Q7Z7C8 310 aa23.69■■□□□ 1.38
CPSF1-202ENST00000527827 SRLQ86TD4 932 aa23.69■■□□□ 1.38
CPSF1-202ENST00000527827 FAM46DQ8NEK8 389 aa23.69■■□□□ 1.38
CPSF1-202ENST00000527827 SGF29Q96ES7 293 aa23.69■■□□□ 1.38
CPSF1-202ENST00000527827 CELF6Q96J87 481 aaKnown RBP23.69■■□□□ 1.38
CPSF1-202ENST00000527827 CNPY3Q9BT09 278 aa23.69■■□□□ 1.38
CPSF1-202ENST00000527827 SLC39A8Q9C0K1 460 aa23.69■■□□□ 1.38
CPSF1-202ENST00000527827 RNF215Q9Y6U7 377 aa23.69■■□□□ 1.38
CPSF1-202ENST00000527827 BOD1L1Q8NFC6 3051 aa23.68■■□□□ 1.38
CPSF1-202ENST00000527827 AGRPO00253 132 aa23.68■■□□□ 1.38
CPSF1-202ENST00000527827 WISP1O95388 367 aa23.68■■□□□ 1.38
CPSF1-202ENST00000527827 GM2AP17900 193 aa23.68■■□□□ 1.38
CPSF1-202ENST00000527827 ETV5P41161 510 aa23.68■■□□□ 1.38
CPSF1-202ENST00000527827 TPI1P60174 286 aa23.68■■□□□ 1.38
CPSF1-202ENST00000527827 KCNC4Q03721 635 aa23.68■■□□□ 1.38
CPSF1-202ENST00000527827 FKBP15Q5T1M5 1219 aa23.68■■□□□ 1.38
CPSF1-202ENST00000527827 LIPIQ6XZB0 460 aa23.68■■□□□ 1.38
CPSF1-202ENST00000527827 TMPRSS9Q7Z410 1059 aa23.68■■□□□ 1.38
CPSF1-202ENST00000527827 SPRED1Q7Z699 444 aa23.68■■□□□ 1.38
CPSF1-202ENST00000527827 TSEN2Q8NCE0 465 aaKnown RBP23.68■■□□□ 1.38
CPSF1-202ENST00000527827 ECHDC3Q96DC8 303 aa23.68■■□□□ 1.38
CPSF1-202ENST00000527827 TMEM168Q9H0V1 697 aa23.68■■□□□ 1.38
CPSF1-202ENST00000527827 GPATCH2LQ9NWQ4 482 aa23.68■■□□□ 1.38
CPSF1-202ENST00000527827 MAST4O15021 2626 aa23.68■■□□□ 1.38
CPSF1-202ENST00000527827 PRAMEF33A0A0G2JMD5 474 aa23.67■■□□□ 1.38
CPSF1-202ENST00000527827 ANKRD62A6NC57 917 aa23.67■■□□□ 1.38
CPSF1-202ENST00000527827 CACNB4O00305 520 aaPredicted RBP23.67■■□□□ 1.38
CPSF1-202ENST00000527827 PRAMEF10O60809 474 aa23.67■■□□□ 1.38
CPSF1-202ENST00000527827 HOXC4P09017 264 aaPredicted RBP23.67■■□□□ 1.38
CPSF1-202ENST00000527827 HTR7P34969 479 aa23.67■■□□□ 1.38
CPSF1-202ENST00000527827 TRIM23P36406 574 aa23.67■■□□□ 1.38
CPSF1-202ENST00000527827 PAPOLAP51003 745 aaKnown RBP23.67■■□□□ 1.38
CPSF1-202ENST00000527827 OGDHQ02218 1023 aa23.67■■□□□ 1.38
CPSF1-202ENST00000527827 NFATC3Q12968 1075 aa23.67■■□□□ 1.38
CPSF1-202ENST00000527827 HLTFQ14527 1009 aaKnown RBP eCLIP23.67■■□□□ 1.38
CPSF1-202ENST00000527827 C14orf28Q4W4Y0 310 aa23.67■■□□□ 1.38
CPSF1-202ENST00000527827 SLITRK4Q8IW52 837 aa23.67■■□□□ 1.38
CPSF1-202ENST00000527827 CCL4L1Q8NHW4 92 aa23.67■■□□□ 1.38
CPSF1-202ENST00000527827 LGR4Q9BXB1 951 aa23.67■■□□□ 1.38
CPSF1-202ENST00000527827 ATP13A3Q9H7F0 1226 aa23.67■■□□□ 1.38
CPSF1-202ENST00000527827 SEPT11Q9NVA2 429 aaKnown RBP23.67■■□□□ 1.38
CPSF1-202ENST00000527827 LRIT1Q9P2V4 623 aa23.67■■□□□ 1.38
CPSF1-202ENST00000527827 TNFRSF10CO14798 259 aa23.66■■□□□ 1.38
CPSF1-202ENST00000527827 SERPINA4P29622 427 aa23.66■■□□□ 1.38
CPSF1-202ENST00000527827 SYCP1Q15431 976 aa23.66■■□□□ 1.38
CPSF1-202ENST00000527827 AFMIDQ63HM1 303 aa23.66■■□□□ 1.38
CPSF1-202ENST00000527827 XKR5Q6UX68 686 aa23.66■■□□□ 1.38
CPSF1-202ENST00000527827 PRICKLE2Q7Z3G6 844 aa23.66■■□□□ 1.38
CPSF1-202ENST00000527827 ZFAND4Q86XD8 727 aa23.66■■□□□ 1.38
CPSF1-202ENST00000527827 PELI3Q8N2H9 469 aa23.66■■□□□ 1.38
CPSF1-202ENST00000527827 EXTL1Q92935 676 aa23.66■■□□□ 1.38
CPSF1-202ENST00000527827 TMEM159Q96B96 161 aa23.66■■□□□ 1.38
CPSF1-202ENST00000527827 NSMCE3Q96MG7 304 aa23.66■■□□□ 1.38
CPSF1-202ENST00000527827 AGPAT1Q99943 283 aa23.66■■□□□ 1.38
CPSF1-202ENST00000527827 FOXJ2Q9P0K8 574 aa23.66■■□□□ 1.38
CPSF1-202ENST00000527827 HECTD1Q9ULT8 2610 aa23.66■■□□□ 1.38
CPSF1-202ENST00000527827 TLN1Q9Y490 2541 aaKnown RBP23.66■■□□□ 1.38
CPSF1-202ENST00000527827 ARHGAP42A6NI28 874 aa23.65■■□□□ 1.38
CPSF1-202ENST00000527827 B4DGG1 531 aa23.65■■□□□ 1.38
CPSF1-202ENST00000527827 PALMO75781 387 aa23.65■■□□□ 1.38
CPSF1-202ENST00000527827 ITGB2P05107 769 aa23.65■■□□□ 1.38
CPSF1-202ENST00000527827 ELFN1P0C7U0 828 aa23.65■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms