RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 SNRPAP09012 282 aaKnown RBP21.11■□□□□ 0.97
VPS28-208ENST00000527797 CNTFP26441 200 aa21.11■□□□□ 0.97
VPS28-208ENST00000527797 GRIA2P42262 883 aa21.11■□□□□ 0.97
VPS28-208ENST00000527797 FNDC3BQ53EP0 1204 aaKnown RBP21.11■□□□□ 0.97
VPS28-208ENST00000527797 EMC10Q5UCC4 262 aa21.11■□□□□ 0.97
VPS28-208ENST00000527797 PRPF38BQ5VTL8 546 aaKnown RBP21.11■□□□□ 0.97
VPS28-208ENST00000527797 NAIF1Q69YI7 327 aaPredicted RBP21.11■□□□□ 0.97
VPS28-208ENST00000527797 CHST14Q8NCH0 376 aa21.11■□□□□ 0.97
VPS28-208ENST00000527797 GABPB2Q8TAK5 448 aaPredicted RBP21.11■□□□□ 0.97
VPS28-208ENST00000527797 SRPK1Q96SB4 655 aaKnown RBP21.11■□□□□ 0.97
VPS28-208ENST00000527797 AGAP2Q99490 1192 aa21.11■□□□□ 0.97
VPS28-208ENST00000527797 CDX2Q99626 313 aaPredicted RBP21.11■□□□□ 0.97
VPS28-208ENST00000527797 FAM167BQ9BTA0 163 aa21.11■□□□□ 0.97
VPS28-208ENST00000527797 MAGEE1Q9HCI5 957 aa21.11■□□□□ 0.97
VPS28-208ENST00000527797 CDH23Q9H251 3354 aa21.11■□□□□ 0.97
VPS28-208ENST00000527797 A0A1W2PQ67 120 aa21.11■□□□□ 0.97
VPS28-208ENST00000527797 C2CD4DB7Z1M9 353 aa21.11■□□□□ 0.97
VPS28-208ENST00000527797 GOLGA8TH3BQL2 631 aa21.11■□□□□ 0.97
VPS28-208ENST00000527797 MT-ND3P03897 115 aa21.11■□□□□ 0.97
VPS28-208ENST00000527797 APODP05090 189 aa21.11■□□□□ 0.97
VPS28-208ENST00000527797 ARNTP27540 789 aa21.11■□□□□ 0.97
VPS28-208ENST00000527797 GP5P40197 560 aa21.11■□□□□ 0.97
VPS28-208ENST00000527797 PDE1BQ01064 536 aa21.11■□□□□ 0.97
VPS28-208ENST00000527797 ACVR1Q04771 509 aa21.11■□□□□ 0.97
VPS28-208ENST00000527797 AAK1Q2M2I8 961 aa21.11■□□□□ 0.97
VPS28-208ENST00000527797 GRTP1Q5TC63 336 aa21.11■□□□□ 0.97
VPS28-208ENST00000527797 NDUFAF2Q8N183 169 aa21.11■□□□□ 0.97
VPS28-208ENST00000527797 MZB1Q8WU39 189 aa21.11■□□□□ 0.97
VPS28-208ENST00000527797 VOPP1Q96AW1 172 aa21.11■□□□□ 0.97
VPS28-208ENST00000527797 MTBPQ96DY7 904 aa21.11■□□□□ 0.97
VPS28-208ENST00000527797 SMIM14Q96QK8 99 aa21.11■□□□□ 0.97
VPS28-208ENST00000527797 TRABDQ9H4I3 376 aa21.11■□□□□ 0.97
VPS28-208ENST00000527797 PHTF1Q9UMS5 762 aa21.11■□□□□ 0.97
VPS28-208ENST00000527797 PSAT1Q9Y617 370 aa21.11■□□□□ 0.97
VPS28-208ENST00000527797 MIA3Q5JRA6 1907 aa21.1■□□□□ 0.97
VPS28-208ENST00000527797 A0A1W2PPM1 405 aa21.1■□□□□ 0.97
VPS28-208ENST00000527797 AURKAO14965 403 aa21.1■□□□□ 0.97
VPS28-208ENST00000527797 SLC7A4O43246 635 aa21.1■□□□□ 0.97
VPS28-208ENST00000527797 BUD23O43709 281 aaKnown RBP21.1■□□□□ 0.97
VPS28-208ENST00000527797 CTPS1P17812 591 aa21.1■□□□□ 0.97
VPS28-208ENST00000527797 LPOP22079 712 aaPredicted RBP21.1■□□□□ 0.97
VPS28-208ENST00000527797 PRAMEP78395 509 aa21.1■□□□□ 0.97
VPS28-208ENST00000527797 NEPROQ6NW34 567 aa21.1■□□□□ 0.97
VPS28-208ENST00000527797 GDPD4Q6W3E5 623 aa21.1■□□□□ 0.97
VPS28-208ENST00000527797 STRA8Q7Z7C7 330 aa21.1■□□□□ 0.97
VPS28-208ENST00000527797 CNTN4Q8IWV2 1026 aa21.1■□□□□ 0.97
VPS28-208ENST00000527797 PLCD3Q8N3E9 789 aa21.1■□□□□ 0.97
VPS28-208ENST00000527797 CALML6Q8TD86 181 aa21.1■□□□□ 0.97
VPS28-208ENST00000527797 PTPRN2Q92932 1015 aa21.1■□□□□ 0.97
VPS28-208ENST00000527797 HDAC10Q969S8 669 aa21.1■□□□□ 0.97
VPS28-208ENST00000527797 ECHDC3Q96DC8 303 aa21.1■□□□□ 0.97
VPS28-208ENST00000527797 CHFRQ96EP1 664 aa21.1■□□□□ 0.97
VPS28-208ENST00000527797 DNAJC1Q96KC8 554 aaKnown RBP21.1■□□□□ 0.97
VPS28-208ENST00000527797 SELENOSQ9BQE4 189 aa21.1■□□□□ 0.97
VPS28-208ENST00000527797 NLE1Q9NVX2 485 aaPredicted RBP21.1■□□□□ 0.97
VPS28-208ENST00000527797 A0A0J9YYE9 177 aa21.09■□□□□ 0.97
VPS28-208ENST00000527797 TRIM49D1C9J1S8 452 aa21.09■□□□□ 0.97
VPS28-208ENST00000527797 SIN3BO75182 1162 aa21.09■□□□□ 0.97
VPS28-208ENST00000527797 RPP40O75818 363 aaKnown RBP21.09■□□□□ 0.97
VPS28-208ENST00000527797 TRBC1P01850 177 aa21.09■□□□□ 0.97
VPS28-208ENST00000527797 UGT2B4P06133 528 aa21.09■□□□□ 0.97
VPS28-208ENST00000527797 ATP1A2P50993 1020 aa21.09■□□□□ 0.97
VPS28-208ENST00000527797 ZNF140P52738 457 aaPredicted RBP21.09■□□□□ 0.97
VPS28-208ENST00000527797 OR13C4Q8NGS5 318 aa21.09■□□□□ 0.97
VPS28-208ENST00000527797 OR6P1Q8NGX9 317 aa21.09■□□□□ 0.97
VPS28-208ENST00000527797 PPM1EQ8WY54 764 aa21.09■□□□□ 0.97
VPS28-208ENST00000527797 LRIG1Q96JA1 1093 aa21.09■□□□□ 0.97
VPS28-208ENST00000527797 SMC6Q96SB8 1091 aa21.09■□□□□ 0.97
VPS28-208ENST00000527797 MFSD1Q9H3U5 465 aa21.09■□□□□ 0.97
VPS28-208ENST00000527797 MTG2Q9H4K7 406 aa21.09■□□□□ 0.97
VPS28-208ENST00000527797 CNOT10Q9H9A5 744 aaKnown RBP21.09■□□□□ 0.97
VPS28-208ENST00000527797 IL36AQ9UHA7 158 aa21.09■□□□□ 0.97
VPS28-208ENST00000527797 ZNF711Q9Y462 761 aa21.09■□□□□ 0.97
VPS28-208ENST00000527797 ALPIP09923 528 aa21.08■□□□□ 0.97
VPS28-208ENST00000527797 BRAFP15056 766 aa21.08■□□□□ 0.97
VPS28-208ENST00000527797 SPRP35270 261 aaPredicted RBP21.08■□□□□ 0.97
VPS28-208ENST00000527797 ARSDP51689 593 aa21.08■□□□□ 0.97
VPS28-208ENST00000527797 CSE1LP55060 971 aaKnown RBP21.08■□□□□ 0.97
VPS28-208ENST00000527797 TMPRSS15P98073 1019 aa21.08■□□□□ 0.97
VPS28-208ENST00000527797 BMPR2Q13873 1038 aa21.08■□□□□ 0.97
VPS28-208ENST00000527797 ZNF234Q14588 700 aa21.08■□□□□ 0.97
VPS28-208ENST00000527797 Q7L0L9 218 aa21.08■□□□□ 0.97
VPS28-208ENST00000527797 SFTPA1Q8IWL2 248 aa21.08■□□□□ 0.97
VPS28-208ENST00000527797 SUGP1Q8IWZ8 645 aaKnown RBP21.08■□□□□ 0.97
VPS28-208ENST00000527797 LMNTD2Q8IXW0 634 aa21.08■□□□□ 0.97
VPS28-208ENST00000527797 GRIN3AQ8TCU5 1115 aa21.08■□□□□ 0.97
VPS28-208ENST00000527797 SPOCK2Q92563 424 aa21.08■□□□□ 0.97
VPS28-208ENST00000527797 TBATAQ96M53 351 aa21.08■□□□□ 0.97
VPS28-208ENST00000527797 KLHL32Q96NJ5 620 aa21.08■□□□□ 0.97
VPS28-208ENST00000527797 OSBPL1AQ9BXW6 950 aa21.08■□□□□ 0.97
VPS28-208ENST00000527797 GGT7Q9UJ14 662 aa21.08■□□□□ 0.97
VPS28-208ENST00000527797 ADAM21Q9UKJ8 722 aa21.08■□□□□ 0.97
VPS28-208ENST00000527797 WASF2Q9Y6W5 498 aa21.08■□□□□ 0.97
VPS28-208ENST00000527797 TRIOBPQ9H2D6 2365 aa21.08■□□□□ 0.96
VPS28-208ENST00000527797 EDDM13A0A1B0GTR0 161 aa21.07■□□□□ 0.96
VPS28-208ENST00000527797 SLC4A1P02730 911 aa21.07■□□□□ 0.96
VPS28-208ENST00000527797 FOSL2P15408 326 aa21.07■□□□□ 0.96
VPS28-208ENST00000527797 CREB1P16220 341 aa21.07■□□□□ 0.96
VPS28-208ENST00000527797 PSMA3P25788 255 aa21.07■□□□□ 0.96
VPS28-208ENST00000527797 SOX9P48436 509 aa21.07■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms