RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 FZD3Q9NPG1 666 aa10.24□□□□□ -0.77
VPS28-204ENST00000526054 DTLQ9NZJ0 730 aa10.24□□□□□ -0.77
VPS28-204ENST00000526054 LHX3Q9UBR4 397 aa10.24□□□□□ -0.77
VPS28-204ENST00000526054 IL36AQ9UHA7 158 aa10.24□□□□□ -0.77
VPS28-204ENST00000526054 PACSIN2Q9UNF0 486 aaPredicted RBP10.24□□□□□ -0.77
VPS28-204ENST00000526054 HEY1Q9Y5J3 304 aa10.24□□□□□ -0.77
VPS28-204ENST00000526054 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP10.24□□□□□ -0.77
VPS28-204ENST00000526054 GOLGA6L9A6NEM1 432 aa10.23□□□□□ -0.77
VPS28-204ENST00000526054 DDX3YO15523 660 aaKnown RBP10.23□□□□□ -0.77
VPS28-204ENST00000526054 FFAR2O15552 330 aa10.23□□□□□ -0.77
VPS28-204ENST00000526054 SIGLEC6O43699 453 aa10.23□□□□□ -0.77
VPS28-204ENST00000526054 MAFKO60675 156 aa10.23□□□□□ -0.77
VPS28-204ENST00000526054 ZNF821O75541 412 aaPredicted RBP10.23□□□□□ -0.77
VPS28-204ENST00000526054 NEBLO76041 1014 aa10.23□□□□□ -0.77
VPS28-204ENST00000526054 POP4O95707 220 aaKnown RBP10.23□□□□□ -0.77
VPS28-204ENST00000526054 KRT10P13645 584 aa10.23□□□□□ -0.77
VPS28-204ENST00000526054 HNRNPA2B1P22626 353 aaKnown RBP10.23□□□□□ -0.77
VPS28-204ENST00000526054 ACP1P24666 158 aa10.23□□□□□ -0.77
VPS28-204ENST00000526054 CCNCP24863 283 aa10.23□□□□□ -0.77
VPS28-204ENST00000526054 MSNP26038 577 aaKnown RBP10.23□□□□□ -0.77
VPS28-204ENST00000526054 AKT2P31751 481 aa10.23□□□□□ -0.77
VPS28-204ENST00000526054 NR2C2P49116 596 aa10.23□□□□□ -0.77
VPS28-204ENST00000526054 GRM3Q14832 879 aa10.23□□□□□ -0.77
VPS28-204ENST00000526054 LLGL1Q15334 1064 aa10.23□□□□□ -0.77
VPS28-204ENST00000526054 RPS6KA1Q15418 735 aa10.23□□□□□ -0.77
VPS28-204ENST00000526054 CYTH1Q15438 398 aa10.23□□□□□ -0.77
VPS28-204ENST00000526054 ATXN7L2Q5T6C5 722 aaPredicted RBP10.23□□□□□ -0.77
VPS28-204ENST00000526054 SEL1L2Q5TEA6 688 aa10.23□□□□□ -0.77
VPS28-204ENST00000526054 MARC1Q5VT66 337 aa10.23□□□□□ -0.77
VPS28-204ENST00000526054 NEK5Q6P3R8 708 aa10.23□□□□□ -0.77
VPS28-204ENST00000526054 LRRC69Q6ZNQ3 347 aa10.23□□□□□ -0.77
VPS28-204ENST00000526054 BBS12Q6ZW61 710 aa10.23□□□□□ -0.77
VPS28-204ENST00000526054 HORMAD1Q86X24 394 aa10.23□□□□□ -0.77
VPS28-204ENST00000526054 CCDC13Q8IYE1 715 aa10.23□□□□□ -0.77
VPS28-204ENST00000526054 CHST14Q8NCH0 376 aa10.23□□□□□ -0.77
VPS28-204ENST00000526054 CCNYQ8ND76 341 aa10.23□□□□□ -0.77
VPS28-204ENST00000526054 ALG3Q92685 438 aa10.23□□□□□ -0.77
VPS28-204ENST00000526054 P3H4Q92791 437 aa10.23□□□□□ -0.77
VPS28-204ENST00000526054 FATE1Q969F0 183 aa10.23□□□□□ -0.77
VPS28-204ENST00000526054 ARRDC3Q96B67 414 aa10.23□□□□□ -0.77
VPS28-204ENST00000526054 BBC3Q96PG8 261 aaPredicted RBP10.23□□□□□ -0.77
VPS28-204ENST00000526054 TSGA13Q96PP4 275 aa10.23□□□□□ -0.77
VPS28-204ENST00000526054 OSBPL1AQ9BXW6 950 aa10.23□□□□□ -0.77
VPS28-204ENST00000526054 BRD8Q9H0E9 1235 aa10.23□□□□□ -0.77
VPS28-204ENST00000526054 CLCA2Q9UQC9 943 aa10.23□□□□□ -0.77
VPS28-204ENST00000526054 EFR3BQ9Y2G0 817 aa10.23□□□□□ -0.77
VPS28-204ENST00000526054 WASF2Q9Y6W5 498 aa10.23□□□□□ -0.77
VPS28-204ENST00000526054 TDRD6O60522 2096 aaKnown RBP10.22□□□□□ -0.77
VPS28-204ENST00000526054 A6NNZ2 444 aa10.22□□□□□ -0.77
VPS28-204ENST00000526054 APOC4-APOC2K7ER74 178 aa10.22□□□□□ -0.77
VPS28-204ENST00000526054 KRIT1O00522 736 aa10.22□□□□□ -0.77
VPS28-204ENST00000526054 TRIM38O00635 465 aa10.22□□□□□ -0.77
VPS28-204ENST00000526054 MATN3O15232 486 aa10.22□□□□□ -0.77
VPS28-204ENST00000526054 RRP8O43159 456 aaKnown RBP10.22□□□□□ -0.77
VPS28-204ENST00000526054 TLX3O43711 291 aaPredicted RBP10.22□□□□□ -0.77
VPS28-204ENST00000526054 BRINP1O60477 761 aa10.22□□□□□ -0.77
VPS28-204ENST00000526054 LEFTY1O75610 366 aa10.22□□□□□ -0.77
VPS28-204ENST00000526054 TJP3O95049 919 aa10.22□□□□□ -0.77
VPS28-204ENST00000526054 PCDH8O95206 1070 aa10.22□□□□□ -0.77
VPS28-204ENST00000526054 APOC2P02655 101 aa10.22□□□□□ -0.77
VPS28-204ENST00000526054 PYGMP11217 842 aa10.22□□□□□ -0.77
VPS28-204ENST00000526054 DGKAP23743 735 aa10.22□□□□□ -0.77
VPS28-204ENST00000526054 ITPKBP27987 946 aa10.22□□□□□ -0.77
VPS28-204ENST00000526054 EIF2S3P41091 472 aaKnown RBP10.22□□□□□ -0.77
VPS28-204ENST00000526054 MMP13P45452 471 aa10.22□□□□□ -0.77
VPS28-204ENST00000526054 CSNK1DP48730 415 aa10.22□□□□□ -0.77
VPS28-204ENST00000526054 NEK3P51956 506 aa10.22□□□□□ -0.77
VPS28-204ENST00000526054 INSM1Q01101 510 aaPredicted RBP10.22□□□□□ -0.77
VPS28-204ENST00000526054 PPIDQ08752 370 aaKnown RBP10.22□□□□□ -0.77
VPS28-204ENST00000526054 SLC10A7Q0GE19 358 aa10.22□□□□□ -0.77
VPS28-204ENST00000526054 AP1B1Q10567 949 aa10.22□□□□□ -0.77
VPS28-204ENST00000526054 SLC10A2Q12908 348 aaPredicted RBP10.22□□□□□ -0.77
VPS28-204ENST00000526054 ZNF211Q13398 564 aaPredicted RBP10.22□□□□□ -0.77
VPS28-204ENST00000526054 RTP5Q14D33 572 aa10.22□□□□□ -0.77
VPS28-204ENST00000526054 ZNF284Q2VY69 593 aa10.22□□□□□ -0.77
VPS28-204ENST00000526054 MYLK3Q32MK0 819 aa10.22□□□□□ -0.77
VPS28-204ENST00000526054 ARSIQ5FYB1 569 aa10.22□□□□□ -0.77
VPS28-204ENST00000526054 MEI1Q5TIA1 1274 aa10.22□□□□□ -0.77
VPS28-204ENST00000526054 SEL1L3Q68CR1 1132 aa10.22□□□□□ -0.77
VPS28-204ENST00000526054 NPNTQ6UXI9 565 aa10.22□□□□□ -0.77
VPS28-204ENST00000526054 GCNT7Q6ZNI0 430 aa10.22□□□□□ -0.77
VPS28-204ENST00000526054 ERN2Q76MJ5 926 aaKnown RBP10.22□□□□□ -0.77
VPS28-204ENST00000526054 PTAR1Q7Z6K3 402 aaPredicted RBP10.22□□□□□ -0.77
VPS28-204ENST00000526054 OR13H1Q8NG92 308 aa10.22□□□□□ -0.77
VPS28-204ENST00000526054 OR6K2Q8NGY2 324 aa10.22□□□□□ -0.77
VPS28-204ENST00000526054 OR4C6Q8NH72 309 aa10.22□□□□□ -0.77
VPS28-204ENST00000526054 MAML1Q92585 1016 aa10.22□□□□□ -0.77
VPS28-204ENST00000526054 EXOC2Q96KP1 924 aa10.22□□□□□ -0.77
VPS28-204ENST00000526054 OLFM3Q96PB7 478 aa10.22□□□□□ -0.77
VPS28-204ENST00000526054 PSKH2Q96QS6 385 aa10.22□□□□□ -0.77
VPS28-204ENST00000526054 UBL7Q96S82 380 aaPredicted RBP10.22□□□□□ -0.77
VPS28-204ENST00000526054 HEMGNQ9BXL5 484 aa10.22□□□□□ -0.77
VPS28-204ENST00000526054 HDAC8Q9BY41 377 aa10.22□□□□□ -0.77
VPS28-204ENST00000526054 UCKL1Q9NWZ5 548 aa10.22□□□□□ -0.77
VPS28-204ENST00000526054 AMACRQ9UHK6 382 aa10.22□□□□□ -0.77
VPS28-204ENST00000526054 ZKSCAN5Q9Y2L8 839 aa10.22□□□□□ -0.77
VPS28-204ENST00000526054 TRPM6Q9BX84 2022 aa10.22□□□□□ -0.77
VPS28-204ENST00000526054 RNF103O00237 685 aa10.21□□□□□ -0.77
VPS28-204ENST00000526054 KIF5CO60282 957 aa10.21□□□□□ -0.77
VPS28-204ENST00000526054 PIAS2O75928 621 aa10.21□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms