RNA–Protein interactions for RNA: ENST00000515562.1

DDX41-217, Transcript of DEAD-box helicase 41, humanhuman

TSL 1 (best)

Gene DDX41, Length 1,184 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-217ENST00000515562 C1orf61Q13536 156 aa17.58■□□□□ 0.4
DDX41-217ENST00000515562 INPP5AQ14642 412 aa17.58■□□□□ 0.4
DDX41-217ENST00000515562 LRRC69Q6ZNQ3 347 aa17.58■□□□□ 0.4
DDX41-217ENST00000515562 DPPA4Q7L190 304 aa17.58■□□□□ 0.4
DDX41-217ENST00000515562 EFL1Q7Z2Z2 1120 aaKnown RBP17.58■□□□□ 0.4
DDX41-217ENST00000515562 TP53INP2Q8IXH6 220 aa17.58■□□□□ 0.4
DDX41-217ENST00000515562 SDR16C5Q8N3Y7 309 aa17.58■□□□□ 0.4
DDX41-217ENST00000515562 NSMCE1Q8WV22 266 aa17.58■□□□□ 0.4
DDX41-217ENST00000515562 CPLX3Q8WVH0 158 aa17.58■□□□□ 0.4
DDX41-217ENST00000515562 SCG3Q8WXD2 468 aaKnown RBP17.58■□□□□ 0.4
DDX41-217ENST00000515562 APOOQ9BUR5 198 aa17.58■□□□□ 0.4
DDX41-217ENST00000515562 RCOR3Q9P2K3 495 aaPredicted RBP17.58■□□□□ 0.4
DDX41-217ENST00000515562 KLQ9UEF7 1012 aa17.58■□□□□ 0.4
DDX41-217ENST00000515562 DOLKQ9UPQ8 538 aa17.58■□□□□ 0.4
DDX41-217ENST00000515562 PCDHB1Q9Y5F3 818 aa17.58■□□□□ 0.4
DDX41-217ENST00000515562 LRP4O75096 1905 aa17.58■□□□□ 0.4
DDX41-217ENST00000515562 MYO1FO00160 1098 aa17.57■□□□□ 0.4
DDX41-217ENST00000515562 TLX3O43711 291 aaPredicted RBP17.57■□□□□ 0.4
DDX41-217ENST00000515562 GYPCP04921 128 aa17.57■□□□□ 0.4
DDX41-217ENST00000515562 AMPD1P23109 780 aa17.57■□□□□ 0.4
DDX41-217ENST00000515562 CDH6P55285 790 aa17.57■□□□□ 0.4
DDX41-217ENST00000515562 KIAA1024LP59773 190 aa17.57■□□□□ 0.4
DDX41-217ENST00000515562 KRT81Q14533 505 aa17.57■□□□□ 0.4
DDX41-217ENST00000515562 NFKBIBQ15653 356 aa17.57■□□□□ 0.4
DDX41-217ENST00000515562 ALG11Q2TAA5 492 aa17.57■□□□□ 0.4
DDX41-217ENST00000515562 TBC1D25Q3MII6 688 aa17.57■□□□□ 0.4
DDX41-217ENST00000515562 ESRP1Q6NXG1 681 aaKnown RBP17.57■□□□□ 0.4
DDX41-217ENST00000515562 ALKBH5Q6P6C2 394 aaKnown RBP17.57■□□□□ 0.4
DDX41-217ENST00000515562 LVRNQ6Q4G3 990 aa17.57■□□□□ 0.4
DDX41-217ENST00000515562 LIPIQ6XZB0 460 aa17.57■□□□□ 0.4
DDX41-217ENST00000515562 HID1Q8IV36 788 aa17.57■□□□□ 0.4
DDX41-217ENST00000515562 SLC35F3Q8IY50 421 aa17.57■□□□□ 0.4
DDX41-217ENST00000515562 ARL10Q8N8L6 244 aa17.57■□□□□ 0.4
DDX41-217ENST00000515562 WDR48Q8TAF3 677 aa17.57■□□□□ 0.4
DDX41-217ENST00000515562 FGF11Q92914 225 aa17.57■□□□□ 0.4
DDX41-217ENST00000515562 GRAMD1AQ96CP6 724 aa17.57■□□□□ 0.4
DDX41-217ENST00000515562 WDR92Q96MX6 357 aa17.57■□□□□ 0.4
DDX41-217ENST00000515562 NUDCD1Q96RS6 583 aa17.57■□□□□ 0.4
DDX41-217ENST00000515562 MGME1Q9BQP7 344 aa17.57■□□□□ 0.4
DDX41-217ENST00000515562 CLPBQ9H078 707 aa17.57■□□□□ 0.4
DDX41-217ENST00000515562 PCDH18Q9HCL0 1135 aa17.57■□□□□ 0.4
DDX41-217ENST00000515562 ETNK2Q9NVF9 386 aa17.57■□□□□ 0.4
DDX41-217ENST00000515562 IFNKQ9P0W0 207 aa17.57■□□□□ 0.4
DDX41-217ENST00000515562 OR1A2Q9Y585 309 aa17.57■□□□□ 0.4
DDX41-217ENST00000515562 CACNB4O00305 520 aaPredicted RBP17.56■□□□□ 0.4
DDX41-217ENST00000515562 YY2O15391 372 aa17.56■□□□□ 0.4
DDX41-217ENST00000515562 HTRA2O43464 458 aaPredicted RBP17.56■□□□□ 0.4
DDX41-217ENST00000515562 MAFKO60675 156 aa17.56■□□□□ 0.4
DDX41-217ENST00000515562 TCEA3O75764 348 aa17.56■□□□□ 0.4
DDX41-217ENST00000515562 RECQL5O94762 991 aaPredicted RBP17.56■□□□□ 0.4
DDX41-217ENST00000515562 PEX11BO96011 259 aa17.56■□□□□ 0.4
DDX41-217ENST00000515562 CTSEP14091 401 aa17.56■□□□□ 0.4
DDX41-217ENST00000515562 KELP23276 732 aa17.56■□□□□ 0.4
DDX41-217ENST00000515562 SRP54P61011 504 aaKnown RBP17.56■□□□□ 0.4
DDX41-217ENST00000515562 HADHQ16836 314 aaKnown RBP17.56■□□□□ 0.4
DDX41-217ENST00000515562 RALGPS1Q5JS13 557 aa17.56■□□□□ 0.4
DDX41-217ENST00000515562 TXNRD3NBQ6F5E7 133 aa17.56■□□□□ 0.4
DDX41-217ENST00000515562 ENPP7Q6UWV6 458 aa17.56■□□□□ 0.4
DDX41-217ENST00000515562 GKN2Q86XP6 184 aa17.56■□□□□ 0.4
DDX41-217ENST00000515562 LRRC49Q8IUZ0 686 aa17.56■□□□□ 0.4
DDX41-217ENST00000515562 LSMEM2Q8N112 164 aa17.56■□□□□ 0.4
DDX41-217ENST00000515562 BTBD6Q96KE9 485 aa17.56■□□□□ 0.4
DDX41-217ENST00000515562 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP17.56■□□□□ 0.44e-7■■■□□ 16.3
DDX41-217ENST00000515562 DGKBQ9Y6T7 804 aa17.56■□□□□ 0.4
DDX41-217ENST00000515562 NBEAQ8NFP9 2946 aa17.55■□□□□ 0.4
DDX41-217ENST00000515562 USP12O75317 370 aa17.55■□□□□ 0.4
DDX41-217ENST00000515562 DXOO77932 396 aaKnown RBP17.55■□□□□ 0.4
DDX41-217ENST00000515562 CPP00450 1065 aa17.55■□□□□ 0.4
DDX41-217ENST00000515562 CR2P20023 1033 aa17.55■□□□□ 0.4
DDX41-217ENST00000515562 TGM2P21980 687 aa17.55■□□□□ 0.4
DDX41-217ENST00000515562 SSR1P43307 286 aaKnown RBP17.55■□□□□ 0.4
DDX41-217ENST00000515562 MMP13P45452 471 aa17.55■□□□□ 0.4
DDX41-217ENST00000515562 GABREP78334 506 aa17.55■□□□□ 0.4
DDX41-217ENST00000515562 CCDC122Q5T0U0 273 aa17.55■□□□□ 0.4
DDX41-217ENST00000515562 MARC1Q5VT66 337 aa17.55■□□□□ 0.4
DDX41-217ENST00000515562 RBM44Q6ZP01 1051 aaKnown RBP17.55■□□□□ 0.4
DDX41-217ENST00000515562 PCDH19Q8TAB3 1148 aa17.55■□□□□ 0.4
DDX41-217ENST00000515562 ZNF564Q8TBZ8 553 aaPredicted RBP17.55■□□□□ 0.4
DDX41-217ENST00000515562 TSACCQ96A04 125 aaPredicted RBP17.55■□□□□ 0.4
DDX41-217ENST00000515562 PDXPQ96GD0 296 aa17.55■□□□□ 0.4
DDX41-217ENST00000515562 ZNF578Q96N58 590 aaPredicted RBP17.55■□□□□ 0.4
DDX41-217ENST00000515562 POLR1BQ9H9Y6 1135 aa17.55■□□□□ 0.4
DDX41-217ENST00000515562 KCTD5Q9NXV2 234 aa17.55■□□□□ 0.4
DDX41-217ENST00000515562 B4GALT6Q9UBX8 382 aa17.55■□□□□ 0.4
DDX41-217ENST00000515562 LCMT1Q9UIC8 334 aa17.55■□□□□ 0.4
DDX41-217ENST00000515562 COL27A1Q8IZC6 1860 aaPredicted RBP17.54■□□□□ 0.4
DDX41-217ENST00000515562 MPOP05164 745 aa17.54■□□□□ 0.4
DDX41-217ENST00000515562 CELA2BP08218 269 aaPredicted RBP17.54■□□□□ 0.4
DDX41-217ENST00000515562 HOXC4P09017 264 aaPredicted RBP17.54■□□□□ 0.4
DDX41-217ENST00000515562 HNRNPH3P31942 346 aaKnown RBP17.54■□□□□ 0.4
DDX41-217ENST00000515562 CASP14P31944 242 aa17.54■□□□□ 0.4
DDX41-217ENST00000515562 LSSP48449 732 aa17.54■□□□□ 0.4
DDX41-217ENST00000515562 ACOX1Q15067 660 aa17.54■□□□□ 0.4
DDX41-217ENST00000515562 ISXQ2M1V0 245 aa17.54■□□□□ 0.4
DDX41-217ENST00000515562 ZSCAN23Q3MJ62 389 aa17.54■□□□□ 0.4
DDX41-217ENST00000515562 PERM1Q5SV97 790 aa17.54■□□□□ 0.4
DDX41-217ENST00000515562 RD3Q7Z3Z2 195 aa17.54■□□□□ 0.4
DDX41-217ENST00000515562 PGBD5Q8N414 524 aa17.54■□□□□ 0.4
DDX41-217ENST00000515562 PLA2G15Q8NCC3 412 aa17.54■□□□□ 0.4
DDX41-217ENST00000515562 OR56A4Q8NGH8 313 aa17.54■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 49.8 ms