RNA–Protein interactions for RNA: ENST00000513960.5

VCAN-210, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 3,973 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-210ENST00000513960 INSCQ1MX18 579 aa9.7□□□□□ -0.86
VCAN-210ENST00000513960 SAMD4BQ5PRF9 694 aaKnown RBP9.7□□□□□ -0.86
VCAN-210ENST00000513960 TWF2Q6IBS0 349 aaKnown RBP9.7□□□□□ -0.86
VCAN-210ENST00000513960 ABRAXAS1Q6UWZ7 409 aa9.7□□□□□ -0.86
VCAN-210ENST00000513960 PDZD4Q76G19 769 aaPredicted RBP9.7□□□□□ -0.86
VCAN-210ENST00000513960 RNF34Q969K3 372 aa9.7□□□□□ -0.86
VCAN-210ENST00000513960 NXNL1Q96CM4 212 aa9.7□□□□□ -0.86
VCAN-210ENST00000513960 FCRL3Q96P31 734 aaPredicted RBP9.7□□□□□ -0.86
VCAN-210ENST00000513960 C11orf84Q9BUA3 381 aaPredicted RBP9.7□□□□□ -0.86
VCAN-210ENST00000513960 RPF2Q9H7B2 306 aaKnown RBP9.7□□□□□ -0.86
VCAN-210ENST00000513960 GDAP2Q9NXN4 497 aa9.7□□□□□ -0.86
VCAN-210ENST00000513960 RCOR3Q9P2K3 495 aaPredicted RBP9.7□□□□□ -0.86
VCAN-210ENST00000513960 DSEQ9UL01 958 aa9.7□□□□□ -0.86
VCAN-210ENST00000513960 ACOT9Q9Y305 439 aa9.7□□□□□ -0.86
VCAN-210ENST00000513960 GNGT2O14610 69 aa9.7□□□□□ -0.86
VCAN-210ENST00000513960 PARNO95453 639 aaKnown RBP9.7□□□□□ -0.86
VCAN-210ENST00000513960 SLC4A1P02730 911 aa9.7□□□□□ -0.86
VCAN-210ENST00000513960 PCNAP12004 261 aa9.7□□□□□ -0.86
VCAN-210ENST00000513960 MLNP12872 115 aa9.7□□□□□ -0.86
VCAN-210ENST00000513960 NOS2P35228 1153 aa9.7□□□□□ -0.86
VCAN-210ENST00000513960 MAGEA3P43357 314 aa9.7□□□□□ -0.86
VCAN-210ENST00000513960 LIMK2P53671 638 aa9.7□□□□□ -0.86
VCAN-210ENST00000513960 TPTEP56180 551 aa9.7□□□□□ -0.86
VCAN-210ENST00000513960 MERTKQ12866 999 aa9.7□□□□□ -0.86
VCAN-210ENST00000513960 POU6F1Q14863 301 aa9.7□□□□□ -0.86
VCAN-210ENST00000513960 CLEC6AQ6EIG7 209 aa9.7□□□□□ -0.86
VCAN-210ENST00000513960 NANOGP8Q6NSW7 305 aa9.7□□□□□ -0.86
VCAN-210ENST00000513960 ELMSAN1Q6PJG2 1045 aa9.7□□□□□ -0.86
VCAN-210ENST00000513960 ALKAL1Q6UXT8 129 aa9.7□□□□□ -0.86
VCAN-210ENST00000513960 CCDC81Q6ZN84 652 aa9.7□□□□□ -0.86
VCAN-210ENST00000513960 HM13Q8TCT9 377 aa9.7□□□□□ -0.86
VCAN-210ENST00000513960 PRDM16Q9HAZ2 1276 aa9.7□□□□□ -0.86
VCAN-210ENST00000513960 PALMDQ9NP74 551 aa9.7□□□□□ -0.86
VCAN-210ENST00000513960 POLE4Q9NR33 117 aa9.7□□□□□ -0.86
VCAN-210ENST00000513960 FZD10Q9ULW2 581 aa9.7□□□□□ -0.86
VCAN-210ENST00000513960 AP3B1O00203 1094 aa9.69□□□□□ -0.86
VCAN-210ENST00000513960 EEF2KO00418 725 aaKnown RBP9.69□□□□□ -0.86
VCAN-210ENST00000513960 TADA2AO75478 443 aa9.69□□□□□ -0.86
VCAN-210ENST00000513960 SNRPB2P08579 225 aaKnown RBP9.69□□□□□ -0.86
VCAN-210ENST00000513960 MTHFD1P11586 935 aaKnown RBP9.69□□□□□ -0.86
VCAN-210ENST00000513960 SNX17Q15036 470 aa9.69□□□□□ -0.86
VCAN-210ENST00000513960 PRAMEF19Q5SWL8 479 aa9.69□□□□□ -0.86
VCAN-210ENST00000513960 SAPCD2Q86UD0 394 aa9.69□□□□□ -0.86
VCAN-210ENST00000513960 ZNF354CQ86Y25 554 aa9.69□□□□□ -0.86
VCAN-210ENST00000513960 PSTKQ8IV42 348 aaKnown RBP9.69□□□□□ -0.86
VCAN-210ENST00000513960 FSTL5Q8N475 847 aaPredicted RBP9.69□□□□□ -0.86
VCAN-210ENST00000513960 DNAJB14Q8TBM8 379 aa9.69□□□□□ -0.86
VCAN-210ENST00000513960 NAT9Q9BTE0 207 aa9.69□□□□□ -0.86
VCAN-210ENST00000513960 DUSP16Q9BY84 665 aa9.69□□□□□ -0.86
VCAN-210ENST00000513960 UNC93B1Q9H1C4 597 aa9.69□□□□□ -0.86
VCAN-210ENST00000513960 RNF39Q9H2S5 420 aa9.69□□□□□ -0.86
VCAN-210ENST00000513960 NCKIPSDQ9NZQ3 722 aa9.69□□□□□ -0.86
VCAN-210ENST00000513960 PADI4Q9UM07 663 aa9.69□□□□□ -0.86
VCAN-210ENST00000513960 SNX5Q9Y5X3 404 aa9.69□□□□□ -0.86
VCAN-210ENST00000513960 ANKRD12Q6UB98 2062 aa9.69□□□□□ -0.86
VCAN-210ENST00000513960 TRIP11Q15643 1979 aa9.69□□□□□ -0.86
VCAN-210ENST00000513960 G3V2L1 256 aa9.69□□□□□ -0.86
VCAN-210ENST00000513960 AGRPO00253 132 aa9.69□□□□□ -0.86
VCAN-210ENST00000513960 CLDN5O00501 218 aa9.69□□□□□ -0.86
VCAN-210ENST00000513960 HSPA1AP0DMV8 641 aaKnown RBP9.69□□□□□ -0.86
VCAN-210ENST00000513960 HSPA1BP0DMV9 641 aaKnown RBP9.69□□□□□ -0.86
VCAN-210ENST00000513960 PIM1P11309 404 aaPredicted RBP9.69□□□□□ -0.86
VCAN-210ENST00000513960 HOXD8P13378 290 aaPredicted RBP9.69□□□□□ -0.86
VCAN-210ENST00000513960 ALDH3B2P48448 385 aa9.69□□□□□ -0.86
VCAN-210ENST00000513960 GRB14Q14449 540 aa9.69□□□□□ -0.86
VCAN-210ENST00000513960 MFSD10Q14728 455 aa9.69□□□□□ -0.86
VCAN-210ENST00000513960 SPANXN3Q5MJ09 141 aa9.69□□□□□ -0.86
VCAN-210ENST00000513960 PRR23BQ6ZRT6 265 aa9.69□□□□□ -0.86
VCAN-210ENST00000513960 ADCK1Q86TW2 530 aa9.69□□□□□ -0.86
VCAN-210ENST00000513960 FAM35AQ86V20 835 aa9.69□□□□□ -0.86
VCAN-210ENST00000513960 TP53INP2Q8IXH6 220 aa9.69□□□□□ -0.86
VCAN-210ENST00000513960 ZNF597Q96LX8 424 aa9.69□□□□□ -0.86
VCAN-210ENST00000513960 ATXN3LQ9H3M9 355 aa9.69□□□□□ -0.86
VCAN-210ENST00000513960 RAD21L1Q9H4I0 556 aa9.69□□□□□ -0.86
VCAN-210ENST00000513960 FBRSL1Q9HCM7 1045 aaKnown RBP9.69□□□□□ -0.86
VCAN-210ENST00000513960 OXSMQ9NWU1 459 aa9.69□□□□□ -0.86
VCAN-210ENST00000513960 VTI1BQ9UEU0 232 aa9.69□□□□□ -0.86
VCAN-210ENST00000513960 GIMAP2Q9UG22 337 aa9.69□□□□□ -0.86
VCAN-210ENST00000513960 DICER1Q9UPY3 1922 aaKnown RBP9.69□□□□□ -0.86
VCAN-210ENST00000513960 SYCE1LA8MT33 242 aa9.69□□□□□ -0.86
VCAN-210ENST00000513960 M0R3G1 203 aa9.69□□□□□ -0.86
VCAN-210ENST00000513960 DAB1O75553 588 aa9.69□□□□□ -0.86
VCAN-210ENST00000513960 NPR3P17342 541 aa9.69□□□□□ -0.86
VCAN-210ENST00000513960 YWHAQP27348 245 aa9.69□□□□□ -0.86
VCAN-210ENST00000513960 SLC7A1P30825 629 aa9.69□□□□□ -0.86
VCAN-210ENST00000513960 LILRA4P59901 499 aa9.69□□□□□ -0.86
VCAN-210ENST00000513960 TXNL4AP83876 142 aaKnown RBP9.69□□□□□ -0.86
VCAN-210ENST00000513960 PIGFQ07326 219 aa9.69□□□□□ -0.86
VCAN-210ENST00000513960 ZNF280DQ6N043 979 aa9.69□□□□□ -0.86
VCAN-210ENST00000513960 CARM1Q86X55 608 aa9.69□□□□□ -0.86
VCAN-210ENST00000513960 CNTD1Q8N815 330 aa9.69□□□□□ -0.86
VCAN-210ENST00000513960 PCYOX1LQ8NBM8 494 aa9.69□□□□□ -0.86
VCAN-210ENST00000513960 IPMKQ8NFU5 416 aa9.69□□□□□ -0.86
VCAN-210ENST00000513960 OR2T34Q8NGX1 318 aa9.69□□□□□ -0.86
VCAN-210ENST00000513960 OR2T3Q8NH03 318 aa9.69□□□□□ -0.86
VCAN-210ENST00000513960 GLMNQ92990 594 aa9.69□□□□□ -0.86
VCAN-210ENST00000513960 PARK7Q99497 189 aaKnown RBP9.69□□□□□ -0.86
VCAN-210ENST00000513960 HNRNPABQ99729 332 aaKnown RBP9.69□□□□□ -0.86
VCAN-210ENST00000513960 SPON1Q9HCB6 807 aa9.69□□□□□ -0.86
VCAN-210ENST00000513960 GIN1Q9NXP7 522 aa9.69□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms