RNA–Protein interactions for RNA: ENST00000513562.1

DDX41-216, Transcript of DEAD-box helicase 41, humanhuman

TSL 4

Gene DDX41, Length 552 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-216ENST00000513562 HOXC4P09017 264 aaPredicted RBP11□□□□□ -0.65
DDX41-216ENST00000513562 CD44P16070 742 aaKnown RBP11□□□□□ -0.65
DDX41-216ENST00000513562 RHOQP17081 205 aa11□□□□□ -0.65
DDX41-216ENST00000513562 XPAP23025 273 aaPredicted RBP11□□□□□ -0.65
DDX41-216ENST00000513562 KELP23276 732 aa11□□□□□ -0.65
DDX41-216ENST00000513562 MAP4P27816 1152 aaKnown RBP11□□□□□ -0.65
DDX41-216ENST00000513562 CSF2RBP32927 897 aa11□□□□□ -0.65
DDX41-216ENST00000513562 CSTF2P33240 577 aaKnown RBP eCLIP11□□□□□ -0.65
DDX41-216ENST00000513562 FLT3P36888 993 aa11□□□□□ -0.65
DDX41-216ENST00000513562 MMP12P39900 470 aa11□□□□□ -0.65
DDX41-216ENST00000513562 USP8P40818 1118 aa11□□□□□ -0.65
DDX41-216ENST00000513562 GPR3P46089 330 aa11□□□□□ -0.65
DDX41-216ENST00000513562 MARSP56192 900 aaKnown RBP11□□□□□ -0.65
DDX41-216ENST00000513562 SQSTM1Q13501 440 aa11□□□□□ -0.65
DDX41-216ENST00000513562 STIM1Q13586 685 aa11□□□□□ -0.65
DDX41-216ENST00000513562 UGP2Q16851 508 aa11□□□□□ -0.65
DDX41-216ENST00000513562 DEFB109BQ30KR1 87 aa11□□□□□ -0.65
DDX41-216ENST00000513562 CRTC2Q53ET0 693 aaPredicted RBP11□□□□□ -0.65
DDX41-216ENST00000513562 DCAF12Q5T6F0 453 aa11□□□□□ -0.65
DDX41-216ENST00000513562 FHL5Q5TD97 284 aa11□□□□□ -0.65
DDX41-216ENST00000513562 CAPRIN2Q6IMN6 1127 aaKnown RBP11□□□□□ -0.65
DDX41-216ENST00000513562 TRNP1Q6NT89 227 aa11□□□□□ -0.65
DDX41-216ENST00000513562 TRIM65Q6PJ69 517 aa11□□□□□ -0.65
DDX41-216ENST00000513562 NLGN4XQ8N0W4 816 aa11□□□□□ -0.65
DDX41-216ENST00000513562 BMPERQ8N8U9 685 aa11□□□□□ -0.65
DDX41-216ENST00000513562 NLGN4YQ8NFZ3 816 aaPredicted RBP11□□□□□ -0.65
DDX41-216ENST00000513562 SSC4DQ8WTU2 575 aa11□□□□□ -0.65
DDX41-216ENST00000513562 CASKIN2Q8WXE0 1202 aa11□□□□□ -0.65
DDX41-216ENST00000513562 SHC3Q92529 594 aa11□□□□□ -0.65
DDX41-216ENST00000513562 SNX21Q969T3 373 aa11□□□□□ -0.65
DDX41-216ENST00000513562 KIAA1143Q96AT1 154 aaPredicted RBP11□□□□□ -0.65
DDX41-216ENST00000513562 TEFMQ96QE5 360 aaKnown RBP11□□□□□ -0.65
DDX41-216ENST00000513562 EFHD1Q9BUP0 239 aa11□□□□□ -0.65
DDX41-216ENST00000513562 SPATS2LQ9NUQ6 558 aaKnown RBP11□□□□□ -0.65
DDX41-216ENST00000513562 TMEM248Q9NWD8 314 aa11□□□□□ -0.65
DDX41-216ENST00000513562 OCIAD1Q9NX40 245 aa11□□□□□ -0.65
DDX41-216ENST00000513562 DNAI1Q9UI46 699 aa11□□□□□ -0.65
DDX41-216ENST00000513562 UTP18Q9Y5J1 556 aaKnown RBP eCLIP11□□□□□ -0.65
DDX41-216ENST00000513562 NBASA2RRP1 2371 aa11□□□□□ -0.65
DDX41-216ENST00000513562 LOC101059948A0A1B0GTJ6 334 aa10.99□□□□□ -0.65
DDX41-216ENST00000513562 K7EM74 188 aa10.99□□□□□ -0.65
DDX41-216ENST00000513562 INSIG1O15503 277 aa10.99□□□□□ -0.65
DDX41-216ENST00000513562 KDELR3O43731 214 aa10.99□□□□□ -0.65
DDX41-216ENST00000513562 SMC2O95347 1197 aa10.99□□□□□ -0.65
DDX41-216ENST00000513562 PIGNO95427 931 aa10.99□□□□□ -0.65
DDX41-216ENST00000513562 FGF1P05230 155 aa10.99□□□□□ -0.65
DDX41-216ENST00000513562 CCNB1P14635 433 aa10.99□□□□□ -0.65
DDX41-216ENST00000513562 NR1D1P20393 614 aa10.99□□□□□ -0.65
DDX41-216ENST00000513562 TRIM23P36406 574 aa10.99□□□□□ -0.65
DDX41-216ENST00000513562 STAT1P42224 750 aa10.99□□□□□ -0.65
DDX41-216ENST00000513562 GABRB2P47870 512 aa10.99□□□□□ -0.65
DDX41-216ENST00000513562 RHOAP61586 193 aa10.99□□□□□ -0.65
DDX41-216ENST00000513562 MC1RQ01726 317 aa10.99□□□□□ -0.65
DDX41-216ENST00000513562 TSR1Q2NL82 804 aaKnown RBP10.99□□□□□ -0.65
DDX41-216ENST00000513562 INO80DQ53TQ3 878 aaPredicted RBP10.99□□□□□ -0.65
DDX41-216ENST00000513562 FAM102AQ5T9C2 384 aaPredicted RBP10.99□□□□□ -0.65
DDX41-216ENST00000513562 ANKS6Q68DC2 871 aa10.99□□□□□ -0.65
DDX41-216ENST00000513562 SMYD5Q6GMV2 418 aa10.99□□□□□ -0.65
DDX41-216ENST00000513562 ERAP2Q6P179 960 aa10.99□□□□□ -0.65
DDX41-216ENST00000513562 NRROSQ86YC3 692 aa10.99□□□□□ -0.65
DDX41-216ENST00000513562 TEX19Q8NA77 164 aa10.99□□□□□ -0.65
DDX41-216ENST00000513562 ZDHHC1Q8WTX9 485 aa10.99□□□□□ -0.65
DDX41-216ENST00000513562 STARD8Q92502 1023 aa10.99□□□□□ -0.65
DDX41-216ENST00000513562 RTP4Q96DX8 246 aa10.99□□□□□ -0.65
DDX41-216ENST00000513562 CYP4F12Q9HCS2 524 aa10.99□□□□□ -0.65
DDX41-216ENST00000513562 PLCB1Q9NQ66 1216 aa10.99□□□□□ -0.65
DDX41-216ENST00000513562 APEX2Q9UBZ4 518 aa10.99□□□□□ -0.65
DDX41-216ENST00000513562 OR12D3Q9UGF7 316 aa10.99□□□□□ -0.65
DDX41-216ENST00000513562 KCTD3Q9Y597 815 aa10.99□□□□□ -0.65
DDX41-216ENST00000513562 SDK2Q58EX2 2172 aa10.99□□□□□ -0.65
DDX41-216ENST00000513562 LRP4O75096 1905 aa10.98□□□□□ -0.65
DDX41-216ENST00000513562 IGHV1OR21-1A0A087WYE8 117 aa10.98□□□□□ -0.65
DDX41-216ENST00000513562 PRSS38A1L453 326 aa10.98□□□□□ -0.65
DDX41-216ENST00000513562 CFAP69A5D8W1 941 aa10.98□□□□□ -0.65
DDX41-216ENST00000513562 EFCAB7A8K855 629 aa10.98□□□□□ -0.65
DDX41-216ENST00000513562 BUB1O43683 1085 aa10.98□□□□□ -0.65
DDX41-216ENST00000513562 VPS4BO75351 444 aa10.98□□□□□ -0.65
DDX41-216ENST00000513562 RECQL5O94762 991 aaPredicted RBP10.98□□□□□ -0.65
DDX41-216ENST00000513562 ECEL1O95672 775 aa10.98□□□□□ -0.65
DDX41-216ENST00000513562 GNA14O95837 355 aa10.98□□□□□ -0.65
DDX41-216ENST00000513562 HSP90AA1P07900 732 aaKnown RBP10.98□□□□□ -0.65
DDX41-216ENST00000513562 RNF224P0DH78 156 aa10.98□□□□□ -0.65
DDX41-216ENST00000513562 BMP6P22004 513 aa10.98□□□□□ -0.65
DDX41-216ENST00000513562 GNLYP22749 145 aa10.98□□□□□ -0.65
DDX41-216ENST00000513562 MPSTP25325 297 aa10.98□□□□□ -0.65
DDX41-216ENST00000513562 KRT9P35527 623 aa10.98□□□□□ -0.65
DDX41-216ENST00000513562 PPP1R2P41236 205 aa10.98□□□□□ -0.65
DDX41-216ENST00000513562 APBA1Q02410 837 aa10.98□□□□□ -0.65
DDX41-216ENST00000513562 PTK2Q05397 1052 aa10.98□□□□□ -0.65
DDX41-216ENST00000513562 ABHD18Q0P651 414 aa10.98□□□□□ -0.65
DDX41-216ENST00000513562 NKAIN2Q5VXU1 208 aa10.98□□□□□ -0.65
DDX41-216ENST00000513562 TCTN3Q6NUS6 607 aa10.98□□□□□ -0.65
DDX41-216ENST00000513562 RWDD4Q6NW29 188 aaKnown RBP10.98□□□□□ -0.65
DDX41-216ENST00000513562 TIPARPQ7Z3E1 657 aaKnown RBP10.98□□□□□ -0.65
DDX41-216ENST00000513562 FAM129CQ86XR2 697 aa10.98□□□□□ -0.65
DDX41-216ENST00000513562 XYLT1Q86Y38 959 aa10.98□□□□□ -0.65
DDX41-216ENST00000513562 UNC5BQ8IZJ1 945 aa10.98□□□□□ -0.65
DDX41-216ENST00000513562 FMR1NBQ8N0W7 255 aaPredicted RBP10.98□□□□□ -0.65
DDX41-216ENST00000513562 NETO2Q8NC67 525 aa10.98□□□□□ -0.65
DDX41-216ENST00000513562 GALNT11Q8NCW6 608 aa10.98□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms