RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 PHOX2BQ99453 314 aa12.1□□□□□ -0.47
LIMCH1-213ENST00000511496 ACOXLQ9NUZ1 547 aa12.1□□□□□ -0.47
LIMCH1-213ENST00000511496 C14orf119Q9NWQ9 140 aa12.1□□□□□ -0.47
LIMCH1-213ENST00000511496 TAS2R9Q9NYW1 312 aa12.1□□□□□ -0.47
LIMCH1-213ENST00000511496 CAMSAP3Q9P1Y5 1249 aaPredicted RBP12.1□□□□□ -0.47
LIMCH1-213ENST00000511496 SNX6Q9UNH7 406 aa12.1□□□□□ -0.47
LIMCH1-213ENST00000511496 OR5K3A6NET4 321 aa12.09□□□□□ -0.47
LIMCH1-213ENST00000511496 SAGE2PA6NJ88 616 aa12.09□□□□□ -0.47
LIMCH1-213ENST00000511496 INPP4BO15327 924 aa12.09□□□□□ -0.47
LIMCH1-213ENST00000511496 PCNAP12004 261 aa12.09□□□□□ -0.47
LIMCH1-213ENST00000511496 ZNF250P15622 560 aa12.09□□□□□ -0.47
LIMCH1-213ENST00000511496 DDCP20711 480 aa12.09□□□□□ -0.47
LIMCH1-213ENST00000511496 PSMB9P28065 219 aa12.09□□□□□ -0.47
LIMCH1-213ENST00000511496 RPL14P50914 215 aaKnown RBP12.09□□□□□ -0.47
LIMCH1-213ENST00000511496 PTPN5P54829 565 aa12.09□□□□□ -0.47
LIMCH1-213ENST00000511496 SKIV2LQ15477 1246 aaKnown RBP12.09□□□□□ -0.47
LIMCH1-213ENST00000511496 NFIL3Q16649 462 aa12.09□□□□□ -0.47
LIMCH1-213ENST00000511496 BSPRYQ5W0U4 402 aa12.09□□□□□ -0.47
LIMCH1-213ENST00000511496 STYK1Q6J9G0 422 aa12.09□□□□□ -0.47
LIMCH1-213ENST00000511496 STRADAQ7RTN6 431 aa12.09□□□□□ -0.47
LIMCH1-213ENST00000511496 EFL1Q7Z2Z2 1120 aaKnown RBP12.09□□□□□ -0.47
LIMCH1-213ENST00000511496 DNAJC10Q8IXB1 793 aa12.09□□□□□ -0.47
LIMCH1-213ENST00000511496 PLD6Q8N2A8 252 aaKnown RBP12.09□□□□□ -0.47
LIMCH1-213ENST00000511496 ST8SIA2Q92186 375 aa12.09□□□□□ -0.47
LIMCH1-213ENST00000511496 CEP170P1Q96L14 293 aa12.09□□□□□ -0.47
LIMCH1-213ENST00000511496 FIZ1Q96SL8 496 aa12.09□□□□□ -0.47
LIMCH1-213ENST00000511496 SEPHS2Q99611 448 aa12.09□□□□□ -0.47
LIMCH1-213ENST00000511496 TEX13BQ9BXU2 312 aa12.09□□□□□ -0.47
LIMCH1-213ENST00000511496 AGPAT4Q9NRZ5 378 aa12.09□□□□□ -0.47
LIMCH1-213ENST00000511496 MRPL39Q9NYK5 338 aaKnown RBP12.09□□□□□ -0.47
LIMCH1-213ENST00000511496 SIPA1L3O60292 1781 aaPredicted RBP12.09□□□□□ -0.47
LIMCH1-213ENST00000511496 OR6C70A6NIJ9 312 aa12.09□□□□□ -0.47
LIMCH1-213ENST00000511496 PRKCGP05129 697 aa12.09□□□□□ -0.47
LIMCH1-213ENST00000511496 ADRB2P07550 413 aa12.09□□□□□ -0.47
LIMCH1-213ENST00000511496 AGXTP21549 392 aa12.09□□□□□ -0.47
LIMCH1-213ENST00000511496 OGDHQ02218 1023 aa12.09□□□□□ -0.47
LIMCH1-213ENST00000511496 STX5Q13190 355 aa12.09□□□□□ -0.47
LIMCH1-213ENST00000511496 SAMD4BQ5PRF9 694 aaKnown RBP12.09□□□□□ -0.47
LIMCH1-213ENST00000511496 TBPL2Q6SJ96 375 aa12.09□□□□□ -0.47
LIMCH1-213ENST00000511496 C1orf186Q6ZWK4 172 aa12.09□□□□□ -0.47
LIMCH1-213ENST00000511496 UBQLNLQ8IYU4 475 aa12.09□□□□□ -0.47
LIMCH1-213ENST00000511496 SMG8Q8ND04 991 aaKnown RBP12.09□□□□□ -0.47
LIMCH1-213ENST00000511496 CYP2W1Q8TAV3 490 aa12.09□□□□□ -0.47
LIMCH1-213ENST00000511496 TRAF3IP1Q8TDR0 691 aaPredicted RBP12.09□□□□□ -0.47
LIMCH1-213ENST00000511496 SLC22A17Q8WUG5 538 aa12.09□□□□□ -0.47
LIMCH1-213ENST00000511496 CPB2Q96IY4 423 aa12.09□□□□□ -0.47
LIMCH1-213ENST00000511496 TNKS2Q9H2K2 1166 aa12.09□□□□□ -0.47
LIMCH1-213ENST00000511496 SERHL2Q9H4I8 314 aa12.09□□□□□ -0.47
LIMCH1-213ENST00000511496 IGSF5Q9NSI5 407 aa12.09□□□□□ -0.47
LIMCH1-213ENST00000511496 CACNA2D2Q9NY47 1150 aa12.09□□□□□ -0.47
LIMCH1-213ENST00000511496 GLTPQ9NZD2 209 aa12.09□□□□□ -0.47
LIMCH1-213ENST00000511496 SRP68Q9UHB9 627 aaKnown RBP12.09□□□□□ -0.47
LIMCH1-213ENST00000511496 NUFIP1Q9UHK0 495 aaKnown RBP12.09□□□□□ -0.47
LIMCH1-213ENST00000511496 ZDHHC2Q9UIJ5 367 aa12.09□□□□□ -0.47
LIMCH1-213ENST00000511496 GGA1Q9UJY5 639 aa12.09□□□□□ -0.47
LIMCH1-213ENST00000511496 SNX7Q9UNH6 387 aa12.09□□□□□ -0.47
LIMCH1-213ENST00000511496 BTBD3Q9Y2F9 522 aa12.09□□□□□ -0.47
LIMCH1-213ENST00000511496 HES2Q9Y543 173 aa12.09□□□□□ -0.47
LIMCH1-213ENST00000511496 PRR23AA6NEV1 266 aa12.09□□□□□ -0.47
LIMCH1-213ENST00000511496 ZNF99A8MXY4 864 aaPredicted RBP12.09□□□□□ -0.47
LIMCH1-213ENST00000511496 H0Y626 953 aa12.09□□□□□ -0.47
LIMCH1-213ENST00000511496 TRIM24O15164 1050 aa12.09□□□□□ -0.47
LIMCH1-213ENST00000511496 SLITRK5O94991 958 aa12.09□□□□□ -0.47
LIMCH1-213ENST00000511496 IMPDH1P20839 514 aa12.09□□□□□ -0.47
LIMCH1-213ENST00000511496 ARCN1P48444 511 aaKnown RBP12.09□□□□□ -0.47
LIMCH1-213ENST00000511496 NUMBP49757 651 aa12.09□□□□□ -0.47
LIMCH1-213ENST00000511496 LIG4P49917 911 aa12.09□□□□□ -0.47
LIMCH1-213ENST00000511496 ROR1Q01973 937 aa12.09□□□□□ -0.47
LIMCH1-213ENST00000511496 KCNJ11Q14654 390 aa12.09□□□□□ -0.47
LIMCH1-213ENST00000511496 CYP51A1Q16850 503 aa12.09□□□□□ -0.47
LIMCH1-213ENST00000511496 REP15Q6BDI9 236 aa12.09□□□□□ -0.47
LIMCH1-213ENST00000511496 FAM35AQ86V20 835 aa12.09□□□□□ -0.47
LIMCH1-213ENST00000511496 CLEC4FQ8N1N0 589 aa12.09□□□□□ -0.47
LIMCH1-213ENST00000511496 FBXL13Q8NEE6 735 aa12.09□□□□□ -0.47
LIMCH1-213ENST00000511496 LHFPL5Q8TAF8 219 aa12.09□□□□□ -0.47
LIMCH1-213ENST00000511496 ASIC4Q96FT7 647 aa12.09□□□□□ -0.47
LIMCH1-213ENST00000511496 TRIM8Q9BZR9 551 aa12.09□□□□□ -0.47
LIMCH1-213ENST00000511496 FBXO28Q9NVF7 368 aa12.09□□□□□ -0.47
LIMCH1-213ENST00000511496 POLR3BQ9NW08 1133 aaPredicted RBP12.09□□□□□ -0.47
LIMCH1-213ENST00000511496 PDE10AQ9Y233 779 aa12.09□□□□□ -0.47
LIMCH1-213ENST00000511496 PCDHB3Q9Y5E6 796 aa12.09□□□□□ -0.47
LIMCH1-213ENST00000511496 ANKRD12Q6UB98 2062 aa12.08□□□□□ -0.47
LIMCH1-213ENST00000511496 TMEM233B4DJY2 109 aa12.08□□□□□ -0.48
LIMCH1-213ENST00000511496 MRASO14807 208 aa12.08□□□□□ -0.48
LIMCH1-213ENST00000511496 KCNN4O15554 427 aa12.08□□□□□ -0.48
LIMCH1-213ENST00000511496 AKR7A2O43488 359 aa12.08□□□□□ -0.48
LIMCH1-213ENST00000511496 TRIM13O60858 407 aa12.08□□□□□ -0.48
LIMCH1-213ENST00000511496 ZNF780AO75290 641 aaPredicted RBP12.08□□□□□ -0.48
LIMCH1-213ENST00000511496 MSH3P20585 1137 aa12.08□□□□□ -0.48
LIMCH1-213ENST00000511496 LRPAP1P30533 357 aa12.08□□□□□ -0.48
LIMCH1-213ENST00000511496 SOX9P48436 509 aa12.08□□□□□ -0.48
LIMCH1-213ENST00000511496 ZNF252P-AS1Q0IIN9 211 aa12.08□□□□□ -0.48
LIMCH1-213ENST00000511496 EPS8Q12929 822 aa12.08□□□□□ -0.48
LIMCH1-213ENST00000511496 BCL7AQ4VC05 210 aa12.08□□□□□ -0.48
LIMCH1-213ENST00000511496 ARL13AQ5H913 290 aaPredicted RBP12.08□□□□□ -0.48
LIMCH1-213ENST00000511496 MAMSTRQ6ZN01 415 aa12.08□□□□□ -0.48
LIMCH1-213ENST00000511496 THAP5Q7Z6K1 395 aa12.08□□□□□ -0.48
LIMCH1-213ENST00000511496 ADGRF4Q8IZF3 695 aa12.08□□□□□ -0.48
LIMCH1-213ENST00000511496 ANKRD53Q8N9V6 530 aa12.08□□□□□ -0.48
LIMCH1-213ENST00000511496 TRPM4Q8TD43 1214 aa12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms