RNA–Protein interactions for RNA: ENST00000509769.5

USP53-205, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-205ENST00000509769 S100A14Q9HCY8 104 aa3.59□□□□□ -1.83
USP53-205ENST00000509769 SPAG4Q9NPE6 437 aa3.59□□□□□ -1.83
USP53-205ENST00000509769 SNRKQ9NRH2 765 aa3.59□□□□□ -1.83
USP53-205ENST00000509769 TMEM45AQ9NWC5 275 aa3.59□□□□□ -1.83
USP53-205ENST00000509769 CLIC5Q9NZA1 410 aa3.59□□□□□ -1.83
USP53-205ENST00000509769 AHSPQ9NZD4 102 aa3.59□□□□□ -1.83
USP53-205ENST00000509769 NXF1Q9UBU9 619 aaKnown RBP3.59□□□□□ -1.83
USP53-205ENST00000509769 GTF2A1LQ9UNN4 478 aa3.59□□□□□ -1.83
USP53-205ENST00000509769 NOD1Q9Y239 953 aa3.59□□□□□ -1.83
USP53-205ENST00000509769 PCDHGB2Q9Y5G2 931 aa3.59□□□□□ -1.83
USP53-205ENST00000509769 GJE1A6NN92 205 aa3.59□□□□□ -1.83
USP53-205ENST00000509769 DLGAP1O14490 977 aa3.59□□□□□ -1.83
USP53-205ENST00000509769 TLR5O60602 858 aa3.59□□□□□ -1.83
USP53-205ENST00000509769 ZPR1O75312 459 aa3.59□□□□□ -1.83
USP53-205ENST00000509769 CD2BP2O95400 341 aaKnown RBP3.59□□□□□ -1.83
USP53-205ENST00000509769 SRGNP10124 158 aa3.59□□□□□ -1.83
USP53-205ENST00000509769 CYP2C8P10632 490 aa3.59□□□□□ -1.83
USP53-205ENST00000509769 HLA-EP13747 358 aa3.59□□□□□ -1.83
USP53-205ENST00000509769 TYRP14679 529 aa3.59□□□□□ -1.83
USP53-205ENST00000509769 NFKB1P19838 968 aa3.59□□□□□ -1.83
USP53-205ENST00000509769 MAKP20794 623 aa3.59□□□□□ -1.83
USP53-205ENST00000509769 CYP3A5P20815 502 aa3.59□□□□□ -1.83
USP53-205ENST00000509769 GLDCP23378 1020 aa3.59□□□□□ -1.83
USP53-205ENST00000509769 CYP2C18P33260 490 aa3.59□□□□□ -1.83
USP53-205ENST00000509769 ELK3P41970 407 aa3.59□□□□□ -1.83
USP53-205ENST00000509769 HUNKP57058 714 aa3.59□□□□□ -1.83
USP53-205ENST00000509769 NOMO3P69849 1222 aa3.59□□□□□ -1.83
USP53-205ENST00000509769 REEP5Q00765 189 aa3.59□□□□□ -1.83
USP53-205ENST00000509769 PCDH1Q08174 1060 aa3.59□□□□□ -1.83
USP53-205ENST00000509769 ABRQ12979 859 aa3.59□□□□□ -1.83
USP53-205ENST00000509769 BAMBIQ13145 260 aa3.59□□□□□ -1.83
USP53-205ENST00000509769 NOMO1Q15155 1222 aa3.59□□□□□ -1.83
USP53-205ENST00000509769 SEC23AQ15436 765 aa3.59□□□□□ -1.83
USP53-205ENST00000509769 CLPPQ16740 277 aaPredicted RBP3.59□□□□□ -1.83
USP53-205ENST00000509769 ATP6AP1LQ52LC2 224 aa3.59□□□□□ -1.83
USP53-205ENST00000509769 CARD16Q5EG05 197 aa3.59□□□□□ -1.83
USP53-205ENST00000509769 GRTP1Q5TC63 336 aa3.59□□□□□ -1.83
USP53-205ENST00000509769 LYRM7Q5U5X0 104 aa3.59□□□□□ -1.83
USP53-205ENST00000509769 GTF2IRD2BQ6EKJ0 949 aa3.59□□□□□ -1.83
USP53-205ENST00000509769 ADNP2Q6IQ32 1131 aa3.59□□□□□ -1.83
USP53-205ENST00000509769 RPL13AP3Q6NVV1 102 aa3.59□□□□□ -1.83
USP53-205ENST00000509769 CHST15Q7LFX5 561 aaPredicted RBP3.59□□□□□ -1.83
USP53-205ENST00000509769 GTF2IRD2Q86UP8 949 aa3.59□□□□□ -1.83
USP53-205ENST00000509769 DEFB107AQ8IZN7 70 aa3.59□□□□□ -1.83
USP53-205ENST00000509769 SVBPQ8N300 66 aa3.59□□□□□ -1.83
USP53-205ENST00000509769 PPM1KQ8N3J5 372 aa3.59□□□□□ -1.83
USP53-205ENST00000509769 SLC44A3Q8N4M1 653 aa3.59□□□□□ -1.83
USP53-205ENST00000509769 LILRB4Q8NHJ6 448 aa3.59□□□□□ -1.83
USP53-205ENST00000509769 ITFG1Q8TB96 612 aa3.59□□□□□ -1.83
USP53-205ENST00000509769 ARL11Q969Q4 196 aa3.59□□□□□ -1.83
USP53-205ENST00000509769 LIN37Q96GY3 246 aaPredicted RBP3.59□□□□□ -1.83
USP53-205ENST00000509769 LRFN5Q96NI6 719 aa3.59□□□□□ -1.83
USP53-205ENST00000509769 KLHL5Q96PQ7 755 aa3.59□□□□□ -1.83
USP53-205ENST00000509769 MRI1Q9BV20 369 aa3.59□□□□□ -1.83
USP53-205ENST00000509769 FSD1LQ9BXM9 530 aa3.59□□□□□ -1.83
USP53-205ENST00000509769 NCOR1P1Q9H4R4 102 aa3.59□□□□□ -1.83
USP53-205ENST00000509769 RGCCQ9H4X1 137 aa3.59□□□□□ -1.83
USP53-205ENST00000509769 ZNF408Q9H9D4 720 aa3.59□□□□□ -1.83
USP53-205ENST00000509769 CYP3A43Q9HB55 503 aa3.59□□□□□ -1.83
USP53-205ENST00000509769 KCTD5Q9NXV2 234 aa3.59□□□□□ -1.83
USP53-205ENST00000509769 KLHL8Q9P2G9 620 aaPredicted RBP3.59□□□□□ -1.83
USP53-205ENST00000509769 ADD3Q9UEY8 706 aaKnown RBP3.59□□□□□ -1.83
USP53-205ENST00000509769 LEF1Q9UJU2 399 aaPredicted RBP3.59□□□□□ -1.83
USP53-205ENST00000509769 DLGAP4Q9Y2H0 992 aa3.59□□□□□ -1.83
USP53-205ENST00000509769 THSD7BQ9C0I4 1608 aa3.59□□□□□ -1.84
USP53-205ENST00000509769 QRICH2Q9H0J4 1663 aa3.59□□□□□ -1.84
USP53-205ENST00000509769 CYP2D7A0A087X1C5 515 aa3.59□□□□□ -1.84
USP53-205ENST00000509769 AGAP14A8MT82 685 aa3.59□□□□□ -1.84
USP53-205ENST00000509769 FAM47E-STBD1D6RA91 191 aa3.59□□□□□ -1.84
USP53-205ENST00000509769 FBP2O00757 339 aa3.59□□□□□ -1.84
USP53-205ENST00000509769 USP12O75317 370 aa3.59□□□□□ -1.84
USP53-205ENST00000509769 CSDE1O75534 798 aaKnown RBP3.59□□□□□ -1.84
USP53-205ENST00000509769 H6PDO95479 791 aa3.59□□□□□ -1.84
USP53-205ENST00000509769 PAHP00439 452 aa3.59□□□□□ -1.84
USP53-205ENST00000509769 TFRCP02786 760 aaKnown RBP3.59□□□□□ -1.84
USP53-205ENST00000509769 DNTTP04053 509 aa3.59□□□□□ -1.84
USP53-205ENST00000509769 PAEPP09466 180 aa3.59□□□□□ -1.84
USP53-205ENST00000509769 DBTP11182 482 aaKnown RBP3.59□□□□□ -1.84
USP53-205ENST00000509769 DARSP14868 501 aaKnown RBP3.59□□□□□ -1.84
USP53-205ENST00000509769 DPEP1P16444 411 aa3.59□□□□□ -1.84
USP53-205ENST00000509769 HDCP19113 662 aa3.59□□□□□ -1.84
USP53-205ENST00000509769 KITLGP21583 273 aa3.59□□□□□ -1.84
USP53-205ENST00000509769 ADH6P28332 368 aa3.59□□□□□ -1.84
USP53-205ENST00000509769 ACSL1P33121 698 aa3.59□□□□□ -1.84
USP53-205ENST00000509769 EIF2DP41214 584 aaKnown RBP3.59□□□□□ -1.84
USP53-205ENST00000509769 GRIA2P42262 883 aa3.59□□□□□ -1.84
USP53-205ENST00000509769 ASMTP46597 345 aa3.59□□□□□ -1.84
USP53-205ENST00000509769 NEK3P51956 506 aa3.59□□□□□ -1.84
USP53-205ENST00000509769 FMO1Q01740 532 aa3.59□□□□□ -1.84
USP53-205ENST00000509769 PPARAQ07869 468 aa3.59□□□□□ -1.84
USP53-205ENST00000509769 ITKQ08881 620 aa3.59□□□□□ -1.84
USP53-205ENST00000509769 PLD1Q13393 1074 aa3.59□□□□□ -1.84
USP53-205ENST00000509769 DYRK1AQ13627 763 aa3.59□□□□□ -1.84
USP53-205ENST00000509769 ZNF169Q14929 603 aaPredicted RBP3.59□□□□□ -1.84
USP53-205ENST00000509769 RAB30Q15771 203 aa3.59□□□□□ -1.84
USP53-205ENST00000509769 KLHL26Q53HC5 615 aa3.59□□□□□ -1.84
USP53-205ENST00000509769 CBWD3Q5JTY5 395 aa3.59□□□□□ -1.84
USP53-205ENST00000509769 CBWD5Q5RIA9 395 aa3.59□□□□□ -1.84
USP53-205ENST00000509769 PPP1R15BQ5SWA1 713 aa3.59□□□□□ -1.84
USP53-205ENST00000509769 C10orf62Q5T681 223 aaPredicted RBP3.59□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms