RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 LILRB5O75023 590 aa29.75■■■□□ 2.35
LIMCH1-211ENST00000509638 EPOP01588 193 aa29.75■■■□□ 2.35
LIMCH1-211ENST00000509638 TBC1D3HP0C7X1 549 aa29.75■■■□□ 2.35
LIMCH1-211ENST00000509638 LMAN1P49257 510 aa29.75■■■□□ 2.35
LIMCH1-211ENST00000509638 TERF1P54274 439 aa29.75■■■□□ 2.35
LIMCH1-211ENST00000509638 SIRPB2Q5JXA9 342 aa29.75■■■□□ 2.35
LIMCH1-211ENST00000509638 TBC1D3GQ6DHY5 549 aa29.75■■■□□ 2.35
LIMCH1-211ENST00000509638 TBC1D3CQ6IPX1 549 aa29.75■■■□□ 2.35
LIMCH1-211ENST00000509638 ZC3H14Q6PJT7 736 aaKnown RBP29.75■■■□□ 2.35
LIMCH1-211ENST00000509638 SYDE1Q6ZW31 735 aaPredicted RBP29.75■■■□□ 2.35
LIMCH1-211ENST00000509638 C11orf74Q86VG3 221 aa29.75■■■□□ 2.35
LIMCH1-211ENST00000509638 TBC1D3Q8IZP1 549 aaPredicted RBP29.75■■■□□ 2.35
LIMCH1-211ENST00000509638 NDUFAF2Q8N183 169 aa29.75■■■□□ 2.35
LIMCH1-211ENST00000509638 SLC25A41Q8N5S1 370 aa29.75■■■□□ 2.35
LIMCH1-211ENST00000509638 LRRC45Q96CN5 670 aa29.75■■■□□ 2.35
LIMCH1-211ENST00000509638 TRIM51Q9BSJ1 452 aa29.75■■■□□ 2.35
LIMCH1-211ENST00000509638 WRAP53Q9BUR4 548 aaKnown RBP29.75■■■□□ 2.35
LIMCH1-211ENST00000509638 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP29.74■■■□□ 2.35
LIMCH1-211ENST00000509638 NPIPB15A6NHN6 443 aaPredicted RBP29.74■■■□□ 2.35
LIMCH1-211ENST00000509638 ERI2A8K979 691 aaKnown RBP29.74■■■□□ 2.35
LIMCH1-211ENST00000509638 PCDH8O95206 1070 aa29.74■■■□□ 2.35
LIMCH1-211ENST00000509638 HLA-DPA1P20036 260 aa29.74■■■□□ 2.35
LIMCH1-211ENST00000509638 NFKBIAP25963 317 aa29.74■■■□□ 2.35
LIMCH1-211ENST00000509638 PPP2CBP62714 309 aa29.74■■■□□ 2.35
LIMCH1-211ENST00000509638 PPP2CAP67775 309 aa29.74■■■□□ 2.35
LIMCH1-211ENST00000509638 MRPS25P82663 173 aaKnown RBP29.74■■■□□ 2.35
LIMCH1-211ENST00000509638 CCDC70Q6NSX1 233 aa29.74■■■□□ 2.35
LIMCH1-211ENST00000509638 CEP68Q76N32 757 aa29.74■■■□□ 2.35
LIMCH1-211ENST00000509638 DPPA4Q7L190 304 aa29.74■■■□□ 2.35
LIMCH1-211ENST00000509638 CCHCR1Q8TD31 782 aa29.74■■■□□ 2.35
LIMCH1-211ENST00000509638 SCRN2Q96FV2 425 aa29.74■■■□□ 2.35
LIMCH1-211ENST00000509638 PPIL1Q9Y3C6 166 aa29.74■■■□□ 2.35
LIMCH1-211ENST00000509638 A8MX80 341 aa29.73■■■□□ 2.35
LIMCH1-211ENST00000509638 TSPAN6O43657 245 aa29.73■■■□□ 2.35
LIMCH1-211ENST00000509638 RALGDSQ12967 914 aa29.73■■■□□ 2.35
LIMCH1-211ENST00000509638 TNRC6BQ9UPQ9 1833 aaKnown RBP29.73■■■□□ 2.35
LIMCH1-211ENST00000509638 SDK1Q7Z5N4 2213 aa29.73■■■□□ 2.35
LIMCH1-211ENST00000509638 CTAGE15A4D2H0 777 aa29.73■■■□□ 2.35
LIMCH1-211ENST00000509638 PSMD3O43242 534 aa29.73■■■□□ 2.35
LIMCH1-211ENST00000509638 RAD51CO43502 376 aa29.73■■■□□ 2.35
LIMCH1-211ENST00000509638 FGF1P05230 155 aa29.73■■■□□ 2.35
LIMCH1-211ENST00000509638 CTAGE8P0CG41 777 aa29.73■■■□□ 2.35
LIMCH1-211ENST00000509638 HNF1BP35680 557 aa29.73■■■□□ 2.35
LIMCH1-211ENST00000509638 RANBP10Q6VN20 620 aa29.73■■■□□ 2.35
LIMCH1-211ENST00000509638 CTAGE6Q86UF2 777 aa29.73■■■□□ 2.35
LIMCH1-211ENST00000509638 CTAGE4Q8IX94 777 aa29.73■■■□□ 2.35
LIMCH1-211ENST00000509638 DEFB119Q8N690 84 aa29.73■■■□□ 2.35
LIMCH1-211ENST00000509638 EIF2B3Q9NR50 452 aaKnown RBP29.73■■■□□ 2.35
LIMCH1-211ENST00000509638 WDR87Q6ZQQ6 2873 aa29.72■■■□□ 2.35
LIMCH1-211ENST00000509638 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa29.72■■■□□ 2.35
LIMCH1-211ENST00000509638 RNGTTO60942 597 aaKnown RBP29.72■■■□□ 2.35
LIMCH1-211ENST00000509638 PIRTP0C851 137 aa29.72■■■□□ 2.35
LIMCH1-211ENST00000509638 CYP2A6P11509 494 aaPredicted RBP29.72■■■□□ 2.35
LIMCH1-211ENST00000509638 LHCGRP22888 699 aa29.72■■■□□ 2.35
LIMCH1-211ENST00000509638 VIPR1P32241 457 aa29.72■■■□□ 2.35
LIMCH1-211ENST00000509638 PTPN5P54829 565 aa29.72■■■□□ 2.35
LIMCH1-211ENST00000509638 SEL1L3Q68CR1 1132 aa29.72■■■□□ 2.35
LIMCH1-211ENST00000509638 NAPEPLDQ6IQ20 393 aa29.72■■■□□ 2.35
LIMCH1-211ENST00000509638 TMEFF1Q8IYR6 380 aa29.72■■■□□ 2.35
LIMCH1-211ENST00000509638 CEP112Q8N8E3 955 aa29.72■■■□□ 2.35
LIMCH1-211ENST00000509638 CXorf40AQ8TE69 158 aa29.72■■■□□ 2.35
LIMCH1-211ENST00000509638 SCN8AQ9UQD0 1980 aa29.71■■■□□ 2.35
LIMCH1-211ENST00000509638 A0A1W2PQU0 124 aa29.71■■■□□ 2.35
LIMCH1-211ENST00000509638 SIM2Q14190 667 aaPredicted RBP29.71■■■□□ 2.35
LIMCH1-211ENST00000509638 TMEM52BQ4KMG9 183 aa29.71■■■□□ 2.35
LIMCH1-211ENST00000509638 KIAA0895LQ68EN5 471 aa29.71■■■□□ 2.35
LIMCH1-211ENST00000509638 KIAA1161Q6NSJ0 714 aa29.71■■■□□ 2.35
LIMCH1-211ENST00000509638 NEK5Q6P3R8 708 aa29.71■■■□□ 2.35
LIMCH1-211ENST00000509638 LPCAT2Q7L5N7 544 aa29.71■■■□□ 2.35
LIMCH1-211ENST00000509638 MAATS1Q7Z4T9 603 aa29.71■■■□□ 2.35
LIMCH1-211ENST00000509638 TSPAN33Q86UF1 283 aa29.71■■■□□ 2.35
LIMCH1-211ENST00000509638 CADM4Q8NFZ8 388 aa29.71■■■□□ 2.35
LIMCH1-211ENST00000509638 HSPA12BQ96MM6 686 aa29.71■■■□□ 2.35
LIMCH1-211ENST00000509638 PCED1AQ9H1Q7 454 aa29.71■■■□□ 2.35
LIMCH1-211ENST00000509638 KCNH6Q9H252 994 aa29.71■■■□□ 2.35
LIMCH1-211ENST00000509638 GON4LQ3T8J9 2241 aa29.7■■■□□ 2.35
LIMCH1-211ENST00000509638 A0A0U1RQS6 177 aa29.7■■■□□ 2.35
LIMCH1-211ENST00000509638 SUN1O94901 812 aa29.7■■■□□ 2.35
LIMCH1-211ENST00000509638 FSBPO95073 299 aa29.7■■■□□ 2.35
LIMCH1-211ENST00000509638 ELFN1P0C7U0 828 aa29.7■■■□□ 2.35
LIMCH1-211ENST00000509638 ADCY8P40145 1251 aa29.7■■■□□ 2.35
LIMCH1-211ENST00000509638 KCNJ11Q14654 390 aa29.7■■■□□ 2.35
LIMCH1-211ENST00000509638 PLK5Q496M5 336 aa29.7■■■□□ 2.35
LIMCH1-211ENST00000509638 PMS2CLQ68D20 193 aa29.7■■■□□ 2.35
LIMCH1-211ENST00000509638 PRR23BQ6ZRT6 265 aa29.7■■■□□ 2.35
LIMCH1-211ENST00000509638 TRIM69Q86WT6 500 aa29.7■■■□□ 2.35
LIMCH1-211ENST00000509638 HORMAD1Q86X24 394 aa29.7■■■□□ 2.35
LIMCH1-211ENST00000509638 LYSMD1Q96S90 227 aa29.7■■■□□ 2.35
LIMCH1-211ENST00000509638 CARD6Q9BX69 1037 aa29.7■■■□□ 2.35
LIMCH1-211ENST00000509638 L2HGDHQ9H9P8 463 aa29.7■■■□□ 2.35
LIMCH1-211ENST00000509638 ZFR2Q9UPR6 939 aaKnown RBP29.7■■■□□ 2.35
LIMCH1-211ENST00000509638 HCN4Q9Y3Q4 1203 aa29.7■■■□□ 2.35
LIMCH1-211ENST00000509638 BPTFQ12830 3046 aa29.7■■■□□ 2.34
LIMCH1-211ENST00000509638 PLXNA2O75051 1894 aa29.7■■■□□ 2.34
LIMCH1-211ENST00000509638 C10orf142B7Z368 130 aa29.69■■■□□ 2.34
LIMCH1-211ENST00000509638 IGHV4-34P06331 123 aa29.69■■■□□ 2.34
LIMCH1-211ENST00000509638 MAT2AP31153 395 aaKnown RBP29.69■■■□□ 2.34
LIMCH1-211ENST00000509638 LIG3P49916 1009 aa29.69■■■□□ 2.34
LIMCH1-211ENST00000509638 RPS21P63220 83 aaKnown RBP29.69■■■□□ 2.34
LIMCH1-211ENST00000509638 ELF2Q15723 593 aa29.69■■■□□ 2.34
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms