RNA–Protein interactions for RNA: ENST00000503057.5

LIMCH1-205, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-205ENST00000503057 CHI3L1P36222 383 aaPredicted RBP10.81□□□□□ -0.68
LIMCH1-205ENST00000503057 TAF10Q12962 218 aa10.81□□□□□ -0.68
LIMCH1-205ENST00000503057 HNRNPDQ14103 355 aaKnown RBP10.81□□□□□ -0.68
LIMCH1-205ENST00000503057 KIAA0930Q6ICG6 404 aaPredicted RBP10.81□□□□□ -0.68
LIMCH1-205ENST00000503057 ERAP2Q6P179 960 aa10.81□□□□□ -0.68
LIMCH1-205ENST00000503057 SPATA19Q7Z5L4 167 aa10.81□□□□□ -0.68
LIMCH1-205ENST00000503057 HPS6Q86YV9 775 aa10.81□□□□□ -0.68
LIMCH1-205ENST00000503057 STYXQ8WUJ0 223 aa10.81□□□□□ -0.68
LIMCH1-205ENST00000503057 DACT3Q96B18 629 aaPredicted RBP10.81□□□□□ -0.68
LIMCH1-205ENST00000503057 NPAS2Q99743 824 aa10.81□□□□□ -0.68
LIMCH1-205ENST00000503057 OSBPL11Q9BXB4 747 aa10.81□□□□□ -0.68
LIMCH1-205ENST00000503057 OSBPL2Q9H1P3 480 aa10.81□□□□□ -0.68
LIMCH1-205ENST00000503057 MRPL17Q9NRX2 175 aaKnown RBP10.81□□□□□ -0.68
LIMCH1-205ENST00000503057 TMEM161AQ9NX61 479 aa10.81□□□□□ -0.68
LIMCH1-205ENST00000503057 PACSIN3Q9UKS6 424 aa10.81□□□□□ -0.68
LIMCH1-205ENST00000503057 OTCP00480 354 aa10.8□□□□□ -0.68
LIMCH1-205ENST00000503057 ANXA5P08758 320 aa10.8□□□□□ -0.68
LIMCH1-205ENST00000503057 OR4Q2P0C623 313 aa10.8□□□□□ -0.68
LIMCH1-205ENST00000503057 PCNAP12004 261 aa10.8□□□□□ -0.68
LIMCH1-205ENST00000503057 PROZP22891 400 aa10.8□□□□□ -0.68
LIMCH1-205ENST00000503057 S100A5P33763 92 aa10.8□□□□□ -0.68
LIMCH1-205ENST00000503057 RXRGP48443 463 aa10.8□□□□□ -0.68
LIMCH1-205ENST00000503057 FLT3LGP49771 235 aa10.8□□□□□ -0.68
LIMCH1-205ENST00000503057 RAP1GDS1P52306 607 aa10.8□□□□□ -0.68
LIMCH1-205ENST00000503057 TNK2Q07912 1038 aa10.8□□□□□ -0.68
LIMCH1-205ENST00000503057 IKBKEQ14164 716 aa10.8□□□□□ -0.68
LIMCH1-205ENST00000503057 CHADLQ6NUI6 762 aa10.8□□□□□ -0.68
LIMCH1-205ENST00000503057 TMEM26Q6ZUK4 368 aa10.8□□□□□ -0.68
LIMCH1-205ENST00000503057 ADCY4Q8NFM4 1077 aa10.8□□□□□ -0.68
LIMCH1-205ENST00000503057 TMEM159Q96B96 161 aa10.8□□□□□ -0.68
LIMCH1-205ENST00000503057 C19orf60Q96EN9 201 aa10.8□□□□□ -0.68
LIMCH1-205ENST00000503057 MAGED4Q96JG8 741 aa10.8□□□□□ -0.68
LIMCH1-205ENST00000503057 RHOBTB2Q9BYZ6 727 aa10.8□□□□□ -0.68
LIMCH1-205ENST00000503057 LIMD1Q9UGP4 676 aa10.8□□□□□ -0.68
LIMCH1-205ENST00000503057 SNX10Q9Y5X0 201 aa10.8□□□□□ -0.68
LIMCH1-205ENST00000503057 SLC28A1O00337 649 aa10.8□□□□□ -0.68
LIMCH1-205ENST00000503057 LZTS3O60299 673 aaPredicted RBP10.8□□□□□ -0.68
LIMCH1-205ENST00000503057 TSPAN8P19075 237 aa10.8□□□□□ -0.68
LIMCH1-205ENST00000503057 MC4RP32245 332 aa10.8□□□□□ -0.68
LIMCH1-205ENST00000503057 SP3Q02447 781 aa10.8□□□□□ -0.68
LIMCH1-205ENST00000503057 FAM228AQ86W67 206 aa10.8□□□□□ -0.68
LIMCH1-205ENST00000503057 GPR152Q8TDT2 470 aa10.8□□□□□ -0.68
LIMCH1-205ENST00000503057 BRI3BPQ8WY22 251 aa10.8□□□□□ -0.68
LIMCH1-205ENST00000503057 EMID1Q96A84 441 aaPredicted RBP10.8□□□□□ -0.68
LIMCH1-205ENST00000503057 MAGEB10Q96LZ2 347 aaPredicted RBP10.8□□□□□ -0.68
LIMCH1-205ENST00000503057 TTPALQ9BTX7 342 aa10.8□□□□□ -0.68
LIMCH1-205ENST00000503057 GATA5Q9BWX5 397 aaPredicted RBP10.8□□□□□ -0.68
LIMCH1-205ENST00000503057 ATP13A3Q9H7F0 1226 aa10.8□□□□□ -0.68
LIMCH1-205ENST00000503057 BTRCQ9Y297 605 aa10.8□□□□□ -0.68
LIMCH1-205ENST00000503057 SMIM31A0A1B0GVY4 71 aa10.8□□□□□ -0.68
LIMCH1-205ENST00000503057 GNG14A0A1W2PPG7 69 aa10.8□□□□□ -0.68
LIMCH1-205ENST00000503057 NRP2O60462 931 aa10.8□□□□□ -0.68
LIMCH1-205ENST00000503057 ASGR1P07306 291 aa10.8□□□□□ -0.68
LIMCH1-205ENST00000503057 FGFR3P22607 806 aa10.8□□□□□ -0.68
LIMCH1-205ENST00000503057 IVDP26440 423 aa10.8□□□□□ -0.68
LIMCH1-205ENST00000503057 GRIA1P42261 906 aa10.8□□□□□ -0.68
LIMCH1-205ENST00000503057 SNRPD1P62314 119 aaKnown RBP10.8□□□□□ -0.68
LIMCH1-205ENST00000503057 CNTN1Q12860 1018 aa10.8□□□□□ -0.68
LIMCH1-205ENST00000503057 CAMK2GQ13555 558 aaPredicted RBP10.8□□□□□ -0.68
LIMCH1-205ENST00000503057 ESRP1Q6NXG1 681 aaKnown RBP10.8□□□□□ -0.68
LIMCH1-205ENST00000503057 RFWD3Q6PCD5 774 aa10.8□□□□□ -0.68
LIMCH1-205ENST00000503057 DLK2Q6UY11 383 aa10.8□□□□□ -0.68
LIMCH1-205ENST00000503057 ZNF276Q8N554 614 aa10.8□□□□□ -0.68
LIMCH1-205ENST00000503057 REPS1Q96D71 796 aa10.8□□□□□ -0.68
LIMCH1-205ENST00000503057 HMCESQ96FZ2 354 aa10.8□□□□□ -0.68
LIMCH1-205ENST00000503057 TMEM106CQ9BVX2 250 aa10.8□□□□□ -0.68
LIMCH1-205ENST00000503057 PTPRHQ9HD43 1115 aa10.8□□□□□ -0.68
LIMCH1-205ENST00000503057 BPIFA1Q9NP55 256 aa10.8□□□□□ -0.68
LIMCH1-205ENST00000503057 RAD18Q9NS91 495 aa10.8□□□□□ -0.68
LIMCH1-205ENST00000503057 ARL15Q9NXU5 204 aa10.8□□□□□ -0.68
LIMCH1-205ENST00000503057 TAS2R1Q9NYW7 299 aa10.8□□□□□ -0.68
LIMCH1-205ENST00000503057 CLIC5Q9NZA1 410 aa10.8□□□□□ -0.68
LIMCH1-205ENST00000503057 PIRO00625 290 aa10.8□□□□□ -0.68
LIMCH1-205ENST00000503057 NDST3O95803 873 aa10.8□□□□□ -0.68
LIMCH1-205ENST00000503057 MT-CYBP00156 380 aaPredicted RBP10.8□□□□□ -0.68
LIMCH1-205ENST00000503057 PIRTP0C851 137 aa10.8□□□□□ -0.68
LIMCH1-205ENST00000503057 BOP1Q14137 746 aaKnown RBP10.8□□□□□ -0.68
LIMCH1-205ENST00000503057 TRIP4Q15650 581 aaPredicted RBP10.8□□□□□ -0.68
LIMCH1-205ENST00000503057 KCNA10Q16322 511 aa10.8□□□□□ -0.68
LIMCH1-205ENST00000503057 LSM12Q3MHD2 195 aaKnown RBP10.8□□□□□ -0.68
LIMCH1-205ENST00000503057 NAIF1Q69YI7 327 aaPredicted RBP10.8□□□□□ -0.68
LIMCH1-205ENST00000503057 GK5Q6ZS86 529 aa10.8□□□□□ -0.68
LIMCH1-205ENST00000503057 SLC39A8Q9C0K1 460 aa10.8□□□□□ -0.68
LIMCH1-205ENST00000503057 SPG21Q9NZD8 308 aa10.8□□□□□ -0.68
LIMCH1-205ENST00000503057 FNIP2Q9P278 1114 aa10.8□□□□□ -0.68
LIMCH1-205ENST00000503057 TBC1D30Q9Y2I9 924 aa10.8□□□□□ -0.68
LIMCH1-205ENST00000503057 TELO2Q9Y4R8 837 aa10.8□□□□□ -0.68
LIMCH1-205ENST00000503057 ARIH1Q9Y4X5 557 aaPredicted RBP10.8□□□□□ -0.68
LIMCH1-205ENST00000503057 MYH7BA7E2Y1 1941 aa10.79□□□□□ -0.68
LIMCH1-205ENST00000503057 IRAK2O43187 625 aa10.79□□□□□ -0.68
LIMCH1-205ENST00000503057 ZBTB14O43829 449 aa10.79□□□□□ -0.68
LIMCH1-205ENST00000503057 EOMESO95936 686 aa10.79□□□□□ -0.68
LIMCH1-205ENST00000503057 F2P00734 622 aa10.79□□□□□ -0.68
LIMCH1-205ENST00000503057 LINC00032P0C843 101 aa10.79□□□□□ -0.68
LIMCH1-205ENST00000503057 TACR2P21452 398 aa10.79□□□□□ -0.68
LIMCH1-205ENST00000503057 S100A3P33764 101 aa10.79□□□□□ -0.68
LIMCH1-205ENST00000503057 PBX3P40426 434 aa10.79□□□□□ -0.68
LIMCH1-205ENST00000503057 CLK1P49759 484 aaKnown RBP10.79□□□□□ -0.68
LIMCH1-205ENST00000503057 DSC2Q02487 901 aa10.79□□□□□ -0.68
LIMCH1-205ENST00000503057 IL10RBQ08334 325 aa10.79□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms